Result of FASTA (omim) for pF1KSDA0410
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0410, 485 aa
  1>>>pF1KSDA0410 485 - 485 aa - 485 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7880+/-0.000445; mu= 2.7863+/- 0.028
 mean_var=228.6442+/-48.163, 0's: 0 Z-trim(117.2): 60  B-trim: 74 in 1/55
 Lambda= 0.084819
 statistics sampled from 28865 (28924) to 28865 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.339), width:  16
 Scan time:  7.030

The best scores are:                                      opt bits E(85289)
XP_005266657 (OMIM: 607615) PREDICTED: nucleoporin ( 566) 2997 380.0 9.2e-105
XP_011533630 (OMIM: 607615) PREDICTED: nucleoporin ( 570) 2996 379.9  1e-104
NP_054808 (OMIM: 607615) nucleoporin p58/p45 isofo ( 599) 2996 379.9 1.1e-104
NP_001008564 (OMIM: 607615) nucleoporin p58/p45 is ( 587) 2465 315.0 3.8e-85
XP_016876369 (OMIM: 607615) PREDICTED: nucleoporin ( 325) 1299 172.1 2.2e-42
XP_011533631 (OMIM: 607615) PREDICTED: nucleoporin ( 325) 1299 172.1 2.2e-42
XP_016876370 (OMIM: 607615) PREDICTED: nucleoporin ( 325) 1299 172.1 2.2e-42
XP_016868342 (OMIM: 615753) PREDICTED: nuclear env ( 984)  236 42.4  0.0071
XP_016868343 (OMIM: 615753) PREDICTED: nuclear env ( 984)  236 42.4  0.0071
XP_006716259 (OMIM: 615753) PREDICTED: nuclear env ( 984)  236 42.4  0.0071
NP_742017 (OMIM: 615753) nuclear envelope pore mem ( 984)  236 42.4  0.0071
XP_011515032 (OMIM: 615753) PREDICTED: nuclear env (1153)  236 42.4   0.008
XP_005250784 (OMIM: 615753) PREDICTED: nuclear env (1190)  236 42.5  0.0082
XP_005250783 (OMIM: 615753) PREDICTED: nuclear env (1249)  236 42.5  0.0085


>>XP_005266657 (OMIM: 607615) PREDICTED: nucleoporin p58  (566 aa)
 initn: 3129 init1: 2997 opt: 2997  Z-score: 2001.8  bits: 380.0 E(85289): 9.2e-105
Smith-Waterman score: 2997; 99.8% identity (100.0% similar) in 480 aa overlap (1-480:1-480)

               10        20        30        40        50        60
pF1KSD MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_005 RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGF
              430       440       450       460       470       480

                                                                   
pF1KSD NAFKL                                                       
                                                                   
XP_005 GTSSGFGCSTTGASTFGFGTTNKPSGSLSAGFGSSSTSGFNFSNPGITASAGLTFGVSNP
              490       500       510       520       530       540

>>XP_011533630 (OMIM: 607615) PREDICTED: nucleoporin p58  (570 aa)
 initn: 2996 init1: 2996 opt: 2996  Z-score: 2001.1  bits: 379.9 E(85289): 1e-104
Smith-Waterman score: 2996; 100.0% identity (100.0% similar) in 479 aa overlap (1-479:1-479)

               10        20        30        40        50        60
pF1KSD MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
XP_011 RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGP
              430       440       450       460       470       480

                                                                   
pF1KSD NAFKL                                                       
                                                                   
XP_011 QPSLGVSFGTPFGSGIGTGLQSSGLGSSNLGGFGTSSGFGCSTTGASTFGFGTTNKPSGS
              490       500       510       520       530       540

>>NP_054808 (OMIM: 607615) nucleoporin p58/p45 isoform a  (599 aa)
 initn: 2996 init1: 2996 opt: 2996  Z-score: 2000.8  bits: 379.9 E(85289): 1.1e-104
Smith-Waterman score: 2996; 100.0% identity (100.0% similar) in 479 aa overlap (1-479:1-479)

               10        20        30        40        50        60
pF1KSD MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
NP_054 RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGP
              430       440       450       460       470       480

                                                                   
pF1KSD NAFKL                                                       
                                                                   
NP_054 QPSLGVSFGTPFGSGIGTGLQSSGLGSSNLGGFGTSSGFGCSTTGASTFGFGTTNKPSGS
              490       500       510       520       530       540

>>NP_001008564 (OMIM: 607615) nucleoporin p58/p45 isofor  (587 aa)
 initn: 2406 init1: 2406 opt: 2465  Z-score: 1649.7  bits: 315.0 E(85289): 3.8e-85
Smith-Waterman score: 2896; 97.5% identity (97.5% similar) in 479 aa overlap (1-479:1-467)

               10        20        30        40        50        60
pF1KSD MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGLNFGNLGSTSTPATTSAPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTPATTSAATTGFSLGFNKPAASAT
       ::::::::::::::::::::::::            ::::::::::::::::::::::::
NP_001 SGFGTGLFGSKPATGFTLGGTNTG------------TPATTSAATTGFSLGFNKPAASAT
               70        80                    90       100        

              130       140       150       160       170       180
pF1KSD PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFALPITSTSASGLTLSSALTSTPAASTGFTLNNLGGTTATTTTASTGLSLGGALAGLGG
      110       120       130       140       150       160        

              190       200       210       220       230       240
pF1KSD SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLFQSTNTGTSGLGQNALGLTLGTTAATSTAGNEGLGGIDFSSSSDKKSDKTGTRPEDSK
      170       180       190       200       210       220        

              250       260       270       280       290       300
pF1KSD ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANG
      230       240       250       260       270       280        

              310       320       330       340       350       360
pF1KSD IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQRNTLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQY
      290       300       310       320       330       340        

              370       380       390       400       410       420
pF1KSD RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGY
      350       360       370       380       390       400        

              430       440       450       460       470       480
pF1KSD RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
NP_001 RKMFLGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGP
      410       420       430       440       450       460        

                                                                   
pF1KSD NAFKL                                                       
                                                                   
NP_001 QPSLGVSFGTPFGSGIGTGLQSSGLGSSNLGGFGTSSGFGCSTTGASTFGFGTTNKPSGS
      470       480       490       500       510       520        

>>XP_016876369 (OMIM: 607615) PREDICTED: nucleoporin p58  (325 aa)
 initn: 1299 init1: 1299 opt: 1299  Z-score: 882.0  bits: 172.1 E(85289): 2.2e-42
Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 205 aa overlap (275-479:1-205)

          250       260       270       280       290       300    
pF1KSD ENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANGIQRN
                                     ::::::::::::::::::::::::::::::
XP_016                               MSSKAMLKVQEDIKALKQLLSLAANGIQRN
                                             10        20        30

          310       320       330       340       350       360    
pF1KSD TLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQI
               40        50        60        70        80        90

          370       380       390       400       410       420    
pF1KSD EELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMF
              100       110       120       130       140       150

          430       440       450       460       470       480    
pF1KSD LGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGLNAFK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
XP_016 LGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGPQPSL
              160       170       180       190       200       210

                                                                   
pF1KSD L                                                           
                                                                   
XP_016 GVSFGTPFGSGIGTGLQSSGLGSSNLGGFGTSSGFGCSTTGASTFGFGTTNKPSGSLSAG
              220       230       240       250       260       270

>>XP_011533631 (OMIM: 607615) PREDICTED: nucleoporin p58  (325 aa)
 initn: 1299 init1: 1299 opt: 1299  Z-score: 882.0  bits: 172.1 E(85289): 2.2e-42
Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 205 aa overlap (275-479:1-205)

          250       260       270       280       290       300    
pF1KSD ENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANGIQRN
                                     ::::::::::::::::::::::::::::::
XP_011                               MSSKAMLKVQEDIKALKQLLSLAANGIQRN
                                             10        20        30

          310       320       330       340       350       360    
pF1KSD TLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQI
               40        50        60        70        80        90

          370       380       390       400       410       420    
pF1KSD EELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMF
              100       110       120       130       140       150

          430       440       450       460       470       480    
pF1KSD LGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGLNAFK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
XP_011 LGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGPQPSL
              160       170       180       190       200       210

                                                                   
pF1KSD L                                                           
                                                                   
XP_011 GVSFGTPFGSGIGTGLQSSGLGSSNLGGFGTSSGFGCSTTGASTFGFGTTNKPSGSLSAG
              220       230       240       250       260       270

>>XP_016876370 (OMIM: 607615) PREDICTED: nucleoporin p58  (325 aa)
 initn: 1299 init1: 1299 opt: 1299  Z-score: 882.0  bits: 172.1 E(85289): 2.2e-42
Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 205 aa overlap (275-479:1-205)

          250       260       270       280       290       300    
pF1KSD ENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAANGIQRN
                                     ::::::::::::::::::::::::::::::
XP_016                               MSSKAMLKVQEDIKALKQLLSLAANGIQRN
                                             10        20        30

          310       320       330       340       350       360    
pF1KSD TLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLNIDKLKIETAQELKNAEIALRTQKTPPGLQHEYAAPADYFRILVQQFEVQLQQYRQQI
               40        50        60        70        80        90

          370       380       390       400       410       420    
pF1KSD EELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMF
              100       110       120       130       140       150

          430       440       450       460       470       480    
pF1KSD LGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGLNAFK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
XP_016 LGDAVDVFETRRAEAKKWQNTPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGPQPSL
              160       170       180       190       200       210

                                                                   
pF1KSD L                                                           
                                                                   
XP_016 GVSFGTPFGSGIGTGLQSSGLGSSNLGGFGTSSGFGCSTTGASTFGFGTTNKPSGSLSAG
              220       230       240       250       260       270

>>XP_016868342 (OMIM: 615753) PREDICTED: nuclear envelop  (984 aa)
 initn: 167 init1: 124 opt: 236  Z-score: 172.6  bits: 42.4 E(85289): 0.0071
Smith-Waterman score: 236; 31.3% identity (65.9% similar) in 211 aa overlap (13-212:767-969)

                                 10        20        30        40  
pF1KSD                   MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGL
                                     :.:  : :  .:..  .::. :::.:. : 
XP_016 APAAAPTPAPPSMIKVVPAYVPTPIHPIFGGATHSAFGLKATAS--AFGAPASSQPAFGG
        740       750       760       770       780         790    

                 50        60        70        80        90        
pF1KSD N----FGNLGSTSTPATTSAPSSGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTP
       .    ::   :..  :::.. ::: ....:::   . ::.::. .. : . . :....::
XP_016 STAVFFGAATSSGFGATTQTASSGSSSSVFGSTTPSPFTFGGS-AAPAGSGSFGINVATP
          800       810       820       830        840       850   

      100        110       120         130       140       150     
pF1KSD ATTSAATTG-FSLGFNKPAASAT--PFALPITSTSASGLTLSSALTSTPAASTGFTLNNL
       ....  ::: ::.: .. ...::  :::  . . .: : : .:.  .  ..::  .   .
XP_016 GSST--TTGAFSFGAGQSGSTATSTPFAGGL-GQNALGTTGQSTPFAFNVSSTTESKPVF
             860       870       880        890       900       910

         160          170       180        190       200       210 
pF1KSD GGTTATT---TTASTGLSLGGALAGLGGSLFQSTN-TGTSGLGQNALGLTLGTTAATSTA
       :::.. :   .: . :.. .:.  ..:.:   . . .:.. .:. ::....:  :...: 
XP_016 GGTATPTFGLNTPAPGVGTSGSSLSFGASSAPAQGFVGVAPFGSAALSFSIG--AGSKTP
              920       930       940       950       960          

             220       230       240       250       260       270 
pF1KSD GNEGLGGIDFSSSSDKKSDKTGTRPEDSKALKDENLPPVICQDVENLQKFVKEQKQVQEE
       :                                                           
XP_016 GARQRLQARRQHTRKK                                            
      970       980                                                

>>XP_016868343 (OMIM: 615753) PREDICTED: nuclear envelop  (984 aa)
 initn: 167 init1: 124 opt: 236  Z-score: 172.6  bits: 42.4 E(85289): 0.0071
Smith-Waterman score: 236; 31.3% identity (65.9% similar) in 211 aa overlap (13-212:767-969)

                                 10        20        30        40  
pF1KSD                   MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGL
                                     :.:  : :  .:..  .::. :::.:. : 
XP_016 APAAAPTPAPPSMIKVVPAYVPTPIHPIFGGATHSAFGLKATAS--AFGAPASSQPAFGG
        740       750       760       770       780         790    

                 50        60        70        80        90        
pF1KSD N----FGNLGSTSTPATTSAPSSGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTP
       .    ::   :..  :::.. ::: ....:::   . ::.::. .. : . . :....::
XP_016 STAVFFGAATSSGFGATTQTASSGSSSSVFGSTTPSPFTFGGS-AAPAGSGSFGINVATP
          800       810       820       830        840       850   

      100        110       120         130       140       150     
pF1KSD ATTSAATTG-FSLGFNKPAASAT--PFALPITSTSASGLTLSSALTSTPAASTGFTLNNL
       ....  ::: ::.: .. ...::  :::  . . .: : : .:.  .  ..::  .   .
XP_016 GSST--TTGAFSFGAGQSGSTATSTPFAGGL-GQNALGTTGQSTPFAFNVSSTTESKPVF
             860       870       880        890       900       910

         160          170       180        190       200       210 
pF1KSD GGTTATT---TTASTGLSLGGALAGLGGSLFQSTN-TGTSGLGQNALGLTLGTTAATSTA
       :::.. :   .: . :.. .:.  ..:.:   . . .:.. .:. ::....:  :...: 
XP_016 GGTATPTFGLNTPAPGVGTSGSSLSFGASSAPAQGFVGVAPFGSAALSFSIG--AGSKTP
              920       930       940       950       960          

             220       230       240       250       260       270 
pF1KSD GNEGLGGIDFSSSSDKKSDKTGTRPEDSKALKDENLPPVICQDVENLQKFVKEQKQVQEE
       :                                                           
XP_016 GARQRLQARRQHTRKK                                            
      970       980                                                

>>XP_006716259 (OMIM: 615753) PREDICTED: nuclear envelop  (984 aa)
 initn: 167 init1: 124 opt: 236  Z-score: 172.6  bits: 42.4 E(85289): 0.0071
Smith-Waterman score: 236; 31.3% identity (65.9% similar) in 211 aa overlap (13-212:767-969)

                                 10        20        30        40  
pF1KSD                   MSTGFSFGSGTLGSTTVAAGGTSTGGVFSFGTGASSNPSVGL
                                     :.:  : :  .:..  .::. :::.:. : 
XP_006 APAAAPTPAPPSMIKVVPAYVPTPIHPIFGGATHSAFGLKATAS--AFGAPASSQPAFGG
        740       750       760       770       780         790    

                 50        60        70        80        90        
pF1KSD N----FGNLGSTSTPATTSAPSSGFGTGLFGSKPATGFTLGGTNTGIATTITTGLTLGTP
       .    ::   :..  :::.. ::: ....:::   . ::.::. .. : . . :....::
XP_006 STAVFFGAATSSGFGATTQTASSGSSSSVFGSTTPSPFTFGGS-AAPAGSGSFGINVATP
          800       810       820       830        840       850   

      100        110       120         130       140       150     
pF1KSD ATTSAATTG-FSLGFNKPAASAT--PFALPITSTSASGLTLSSALTSTPAASTGFTLNNL
       ....  ::: ::.: .. ...::  :::  . . .: : : .:.  .  ..::  .   .
XP_006 GSST--TTGAFSFGAGQSGSTATSTPFAGGL-GQNALGTTGQSTPFAFNVSSTTESKPVF
             860       870       880        890       900       910

         160          170       180        190       200       210 
pF1KSD GGTTATT---TTASTGLSLGGALAGLGGSLFQSTN-TGTSGLGQNALGLTLGTTAATSTA
       :::.. :   .: . :.. .:.  ..:.:   . . .:.. .:. ::....:  :...: 
XP_006 GGTATPTFGLNTPAPGVGTSGSSLSFGASSAPAQGFVGVAPFGSAALSFSIG--AGSKTP
              920       930       940       950       960          

             220       230       240       250       260       270 
pF1KSD GNEGLGGIDFSSSSDKKSDKTGTRPEDSKALKDENLPPVICQDVENLQKFVKEQKQVQEE
       :                                                           
XP_006 GARQRLQARRQHTRKK                                            
      970       980                                                




485 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:38:00 2016 done: Thu Nov  3 01:38:01 2016
 Total Scan time:  7.030 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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