(Linear) (Six-base) MAPSORT of: KIAA0364.seq Check: 2595 from: 1 to: 3981 KIAA0364.orf With 182 enzymes: SgfI * October 24, 2006 15:12 .. AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 58 205 643 1273 1498 1867 3211 3499 Size: 58 147 438 630 225 369 1344 288 Cuts at: 3499 3981 Size: 482 Fragments arranged by size: 1344 630 482 438 369 288 225 147 58 AgeI A'CCGG_T Cuts at: 0 284 3981 Size: 284 3697 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 193 1577 2168 3981 Size: 193 1384 591 1813 Fragments arranged by size: 1813 1384 591 193 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 2057 2089 2693 2725 3981 Size: 2057 32 604 32 1256 Fragments arranged by size: 2057 1256 604 32 32 AlwNI CAG_nnn'CTG Cuts at: 0 484 2441 2620 3086 3727 3981 Size: 484 1957 179 466 641 254 Fragments arranged by size: 1957 641 484 466 254 179 ApaI G_GGCC'C Cuts at: 0 680 3981 Size: 680 3301 ApaLI G'TGCA_C Cuts at: 0 3741 3981 Size: 3741 240 ApoI r'AATT_y Cuts at: 0 810 1357 2581 3544 3981 Size: 810 547 1224 963 437 Fragments arranged by size: 1224 963 810 547 437 AvaI C'yCGr_G Cuts at: 0 2351 3981 Size: 2351 1630 BamHI G'GATC_C Cuts at: 0 209 3016 3981 Size: 209 2807 965 Fragments arranged by size: 2807 965 209 BanI G'GyrC_C Cuts at: 0 143 253 345 687 713 1915 2347 2942 Size: 143 110 92 342 26 1202 432 595 Cuts at: 2942 3916 3981 Size: 974 65 Fragments arranged by size: 1202 974 595 432 342 143 110 92 65 26 BanII G_rGCy'C Cuts at: 0 611 680 1475 1985 2264 2552 2570 2706 Size: 611 69 795 510 279 288 18 136 Cuts at: 2706 2903 3282 3981 Size: 197 379 699 Fragments arranged by size: 795 699 611 510 379 288 279 197 136 69 18 BbeI G_GCGC'C Cuts at: 0 1919 3981 Size: 1919 2062 BbsI GAAGACnn'nnnn_ Cuts at: 0 46 767 796 1055 1174 3359 3981 Size: 46 721 29 259 119 2185 622 Fragments arranged by size: 2185 721 622 259 119 46 29 BbvCI CC'TCA_GC Cuts at: 0 3578 3981 Size: 3578 403 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 2664 2698 3981 Size: 2664 34 1283 Fragments arranged by size: 2664 1283 34 BciVI GTATCCnnnnn_n' Cuts at: 0 2962 3981 Size: 2962 1019 BglI GCCn_nnn'nGGC Cuts at: 0 1820 3981 Size: 1820 2161 BglII A'GATC_T Cuts at: 0 3431 3981 Size: 3431 550 BlpI GC'TnA_GC Cuts at: 0 2897 3981 Size: 2897 1084 Bme1580I G_kGCm'C Cuts at: 0 258 680 2352 3745 3981 Size: 258 422 1672 1393 236 Fragments arranged by size: 1672 1393 422 258 236 BmrI ACTGGGnnnn_n' Cuts at: 0 317 515 953 1979 2258 2897 3981 Size: 317 198 438 1026 279 639 1084 Fragments arranged by size: 1084 1026 639 438 317 279 198 BmtI G_CTAG'C Cuts at: 0 3811 3981 Size: 3811 170 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 907 3981 Size: 907 3074 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 713 1336 2296 3448 3646 3724 3981 Size: 713 623 960 1152 198 78 257 Fragments arranged by size: 1152 960 713 623 257 198 78 Bpu10I CC'TnA_GC Cuts at: 0 1742 1748 2303 2879 3281 3578 3734 3981 Size: 1742 6 555 576 402 297 156 247 Fragments arranged by size: 1742 576 555 402 297 247 156 6 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1628 2017 3981 Size: 1628 389 1964 Fragments arranged by size: 1964 1628 389 BsaI GGTCTCn'nnnn_ Cuts at: 0 382 1756 3863 3981 Size: 382 1374 2107 118 Fragments arranged by size: 2107 1374 382 118 BsaHI Gr'CG_yC Cuts at: 0 1916 3981 Size: 1916 2065 BsaWI w'CCGG_w Cuts at: 0 84 284 2075 3981 Size: 84 200 1791 1906 Fragments arranged by size: 1906 1791 200 84 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 1825 1855 2057 2087 2585 2615 2693 2723 Size: 1825 30 202 30 498 30 78 30 Cuts at: 2723 3406 3436 3590 3620 3981 Size: 683 30 154 30 361 Fragments arranged by size: 1825 683 498 361 202 154 78 30 30 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 1978 3981 Size: 1978 2003 BseYI C'CCAG_C Cuts at: 0 610 1632 2551 3172 3185 3478 3981 Size: 610 1022 919 621 13 293 503 Fragments arranged by size: 1022 919 621 610 503 293 13 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1827 2483 2962 3981 Size: 1827 656 479 1019 Fragments arranged by size: 1827 1019 656 479 BsiHKAI G_wGCw'C Cuts at: 0 2570 3745 3981 Size: 2570 1175 236 Fragments arranged by size: 2570 1175 236 BsmI GAATG_Cn' Cuts at: 0 65 3037 3981 Size: 65 2972 944 Fragments arranged by size: 2972 944 65 Bsp1286I G_dGCh'C Cuts at: 0 258 611 680 1475 1985 2264 2352 2552 Size: 258 353 69 795 510 279 88 200 Cuts at: 2552 2570 2706 2903 3282 3745 3981 Size: 18 136 197 379 463 236 Fragments arranged by size: 795 510 463 379 353 279 258 236 200 197 136 88 69 18 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 265 1881 3981 Size: 265 1616 2100 Fragments arranged by size: 2100 1616 265 BsrBI CCG'CTC Cuts at: 0 397 3981 Size: 397 3584 BsrDI GCAATG_nn' Cuts at: 0 1704 3878 3981 Size: 1704 2174 103 Fragments arranged by size: 2174 1704 103 BsrFI r'CCGG_y Cuts at: 0 284 2952 3981 Size: 284 2668 1029 Fragments arranged by size: 2668 1029 284 BssSI C'ACGA_G Cuts at: 0 2569 3981 Size: 2569 1412 BstEII G'GTnAC_C Cuts at: 0 1650 2337 3981 Size: 1650 687 1644 Fragments arranged by size: 1650 1644 687 BstXI CCAn_nnnn'nTGG Cuts at: 0 844 966 2149 2334 2604 2767 2910 3981 Size: 844 122 1183 185 270 163 143 1071 Fragments arranged by size: 1183 1071 844 270 185 163 143 122 BstYI r'GATC_y Cuts at: 0 209 833 3016 3362 3431 3981 Size: 209 624 2183 346 69 550 Fragments arranged by size: 2183 624 550 346 209 69 Bsu36I CC'TnA_GG Cuts at: 0 545 3981 Size: 545 3436 BtgI C'CryG_G Cuts at: 0 429 1783 2884 2918 2958 3197 3981 Size: 429 1354 1101 34 40 239 784 Fragments arranged by size: 1354 1101 784 429 239 40 34 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 1447 3981 Size: 1447 2534 BtsI GCAGTG_nn' Cuts at: 0 1473 1947 3347 3981 Size: 1473 474 1400 634 Fragments arranged by size: 1473 1400 634 474 ClaI AT'CG_AT Cuts at: 0 1085 3981 Size: 1085 2896 DraI TTT'AAA Cuts at: 0 465 3981 Size: 465 3516 DraIII CAC_nnn'GTG Cuts at: 0 599 3981 Size: 599 3382 DrdI GACnn_nn'nnGTC Cuts at: 0 312 2817 3981 Size: 312 2505 1164 Fragments arranged by size: 2505 1164 312 EaeI y'GGCC_r Cuts at: 0 515 1249 3981 Size: 515 734 2732 Fragments arranged by size: 2732 734 515 EarI CTCTTCn'nnn_ Cuts at: 0 404 1666 1709 2157 2632 3230 3861 3884 Size: 404 1262 43 448 475 598 631 23 Cuts at: 3884 3981 Size: 97 Fragments arranged by size: 1262 631 598 475 448 404 97 43 23 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 202 3981 Size: 202 3779 EcoICRI GAG'CTC Cuts at: 0 2568 3981 Size: 2568 1413 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 58 205 643 713 1273 1336 1498 1867 Size: 58 147 438 70 560 63 162 369 Cuts at: 1867 2296 3211 3448 3499 3646 3724 3981 Size: 429 915 237 51 147 78 257 Fragments arranged by size: 915 560 438 429 369 257 237 162 147 147 78 70 63 58 51 EcoNI CCTnn'n_nnAGG Cuts at: 0 1176 2692 3268 3981 Size: 1176 1516 576 713 Fragments arranged by size: 1516 1176 713 576 EcoO109I rG'GnC_Cy Cuts at: 0 117 1412 2438 2617 3526 3724 3981 Size: 117 1295 1026 179 909 198 257 Fragments arranged by size: 1295 1026 909 257 198 179 117 EcoRI G'AATT_C Cuts at: 0 2581 3981 Size: 2581 1400 EcoRV GAT'ATC Cuts at: 0 164 3678 3981 Size: 164 3514 303 Fragments arranged by size: 3514 303 164 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 387 2328 3981 Size: 387 1941 1653 Fragments arranged by size: 1941 1653 387 HaeII r_GCGC'y Cuts at: 0 1919 3981 Size: 1919 2062 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 63 95 381 413 654 686 729 761 Size: 63 32 286 32 241 32 43 32 Cuts at: 761 839 871 1081 1113 1364 1396 1598 1630 Size: 78 32 210 32 251 32 202 32 Cuts at: 1630 1857 1889 2939 2971 3590 3622 3667 3699 Size: 227 32 1050 32 619 32 45 32 Cuts at: 3699 3981 Size: 282 Fragments arranged by size: 1050 619 286 282 251 241 227 210 202 78 63 45 43 32 32 32 32 32 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 0 417 1395 3981 Size: 417 978 2586 Fragments arranged by size: 2586 978 417 HpaI GTT'AAC Cuts at: 0 417 3981 Size: 417 3564 KasI G'GCGC_C Cuts at: 0 1915 3981 Size: 1915 2066 MfeI C'AATT_G Cuts at: 0 2364 3981 Size: 2364 1617 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 128 320 1582 2139 2748 3981 Size: 128 192 1262 557 609 1233 Fragments arranged by size: 1262 1233 609 557 192 128 MscI TGG'CCA Cuts at: 0 517 1251 3981 Size: 517 734 2730 Fragments arranged by size: 2730 734 517 MslI CAynn'nnrTG Cuts at: 0 70 1180 1466 2485 3001 3981 Size: 70 1110 286 1019 516 980 Fragments arranged by size: 1110 1019 980 516 286 70 MspA1I CmG'CkG Cuts at: 0 2219 2274 2516 2746 3083 3647 3981 Size: 2219 55 242 230 337 564 334 Fragments arranged by size: 2219 564 337 334 242 230 55 NarI GG'CG_CC Cuts at: 0 1916 3981 Size: 1916 2065 NcoI C'CATG_G Cuts at: 0 429 2884 2918 2958 3197 3981 Size: 429 2455 34 40 239 784 Fragments arranged by size: 2455 784 429 239 40 34 NdeI CA'TA_TG Cuts at: 0 2387 3981 Size: 2387 1594 NheI G'CTAG_C Cuts at: 0 3807 3981 Size: 3807 174 PflMI CCAn_nnn'nTGG Cuts at: 0 374 599 730 941 1015 2190 3818 3981 Size: 374 225 131 211 74 1175 1628 163 Fragments arranged by size: 1628 1175 374 225 211 163 131 74 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 2057 2089 2693 2725 3981 Size: 2057 32 604 32 1256 Fragments arranged by size: 2057 1256 604 32 32 PpuMI rG'GwC_Cy Cuts at: 0 1412 2438 2617 3526 3981 Size: 1412 1026 179 909 455 Fragments arranged by size: 1412 1026 909 455 179 PspOMI G'GGCC_C Cuts at: 0 676 3981 Size: 676 3305 PstI C_TGCA'G Cuts at: 0 443 3652 3981 Size: 443 3209 329 Fragments arranged by size: 3209 443 329 PvuII CAG'CTG Cuts at: 0 2219 2516 2746 3083 3647 3981 Size: 2219 297 230 337 564 334 Fragments arranged by size: 2219 564 337 334 297 230 SacI G_AGCT'C Cuts at: 0 2570 3981 Size: 2570 1411 SapI GCTCTTCn'nnn_ Cuts at: 0 404 1666 3981 Size: 404 1262 2315 Fragments arranged by size: 2315 1262 404 ScaI AGT'ACT Cuts at: 0 1313 3981 Size: 1313 2668 SfcI C'TryA_G Cuts at: 0 439 1122 1140 1416 2790 3366 3642 3648 Size: 439 683 18 276 1374 576 276 6 Cuts at: 3648 3746 3981 Size: 98 235 Fragments arranged by size: 1374 683 576 439 276 276 235 98 18 6 SfoI GGC'GCC Cuts at: 0 1917 3981 Size: 1917 2064 SmlI C'TyrA_G Cuts at: 0 1643 1996 3981 Size: 1643 353 1985 Fragments arranged by size: 1985 1643 353 StuI AGG'CCT Cuts at: 0 3667 3981 Size: 3667 314 StyI C'CwwG_G Cuts at: 0 121 429 717 1911 2658 2884 2918 2958 Size: 121 308 288 1194 747 226 34 40 Cuts at: 2958 3197 3794 3981 Size: 239 597 187 Fragments arranged by size: 1194 747 597 308 288 239 226 187 121 40 34 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 395 2850 3426 3981 Size: 395 2455 576 555 Fragments arranged by size: 2455 576 555 395 TatI w'GTAC_w Cuts at: 0 1311 3981 Size: 1311 2670 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 3406 3438 3981 Size: 3406 32 543 Fragments arranged by size: 3406 543 32 Tth111I GACn'n_nGTC Cuts at: 0 3604 3981 Size: 3604 377 XbaI T'CTAG_A Cuts at: 0 333 3552 3981 Size: 333 3219 429 Fragments arranged by size: 3219 429 333 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 502 1773 2271 2559 3981 Size: 502 1271 498 288 1422 Fragments arranged by size: 1422 1271 502 498 288 XmnI GAAnn'nnTTC Cuts at: 0 43 1815 3548 3981 Size: 43 1772 1733 433 Fragments arranged by size: 1772 1733 433 43 Enzymes that do cut: AcuI AgeI AlfI AloI AlwNI ApaI ApaLI ApoI AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BglI BglII BlpI Bme1580I BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiHKAI BsmI Bsp1286I BspMI BsrBI BsrDI BsrFI BssSI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI DraI DraIII DrdI EaeI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI HaeII Hin4I HincII HpaI KasI MfeI MmeI MscI MslI MspA1I NarI NcoI NdeI NheI PflMI PpiI PpuMI PspOMI PstI PvuII SacI SapI ScaI SfcI SfoI SmlI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmnI Enzymes that do not cut: AarI AatII AccI Acc65I AclI AfeI AflII AflIII AhdI AleI AscI AseI AsiSI AvrII BaeI BclI BfrBI BmgBI BsaAI BsaBI BsiEI BsiWI BsmBI BspEI BspHI BsrGI BssHII BstAPI BstBI BstZ17I CspCI EagI FseI FspI FspAI HindIII KpnI MluI NaeI NgoMIV NotI NruI NsiI NspI PacI PasI PciI PfoI PmeI PmlI PshAI PsiI PspXI PsrI PvuI RsrII SacII SalI SanDI SbfI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI SspI SwaI XhoI XmaI ZraI