GENSCAN 1.0	Date run:  3-Nov-116	Time: 01:20:04

Sequence gi568815594r:55335418_55582785 : 247368 bp : 39.62% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -    707    702    6                               1.05
 1.02 Term -   4171   3703  469  0  1   96   44   217 0.250  11.56
 1.01 Init -   6997   6990    8  1  2   45   93     0 0.460  -3.40
 1.00 Prom -   8282   8243   40                              -5.25

 2.00 Prom +  10095  10134   40                              -6.55
 2.01 Init +  10920  11140  221  2  2   94   76   194 0.895  14.95
 2.02 Intr +  16631  16790  160  2  1   46   79    74 0.014   1.37
 2.03 Intr +  17030  17080   51  1  0   43   81    87 0.021   1.69
 2.04 Intr +  23929  24071  143  0  2  110   86    41 0.095   4.33
 2.05 Intr +  28712  28854  143  2  2   22  101   130 0.051   6.78
 2.06 Term +  30046  30152  107  2  2   86   42    35 0.064  -3.71
 2.07 PlyA +  30692  30697    6                               1.05

 3.06 PlyA -  30922  30917    6                              -1.95
 3.05 Term -  31470  31156  315  0  0   56   42   267 0.508  12.86
 3.04 Intr -  46396  46308   89  2  2   42   84    59 0.543  -0.33
 3.03 Intr -  51006  50892  115  0  1   88   91   119 0.966  11.30
 3.02 Intr -  51473  51286  188  0  2   82   82    73 0.899   4.59
 3.01 Init -  51942  51855   88  0  1   58   62    88 0.901   4.05
 3.00 Prom -  56617  56578   40                              -4.25

 4.00 Prom +  56947  56986   40                              -7.25
 4.01 Init +  60773  60979  207  1  0   97   83   345 0.991  31.77
 4.02 Intr +  76197  76422  226  2  1   73  109   172 0.626  14.44
 4.03 Intr +  81655  81830  176  2  2   67   74   172 0.778  12.44
 4.04 Intr +  82386  82568  183  2  0   64  105    61 0.764   4.46
 4.05 Intr +  89121  89226  106  2  1   64  119    99 0.545   9.47
 4.06 Term +  96491  96555   65  0  2   58   47    53 0.029  -4.73
 4.07 PlyA +  97039  97044    6                               1.05

 5.14 PlyA -  98196  98191    6                               1.05
 5.13 Term - 100108  99998  111  1  0   78   42   113 0.624   3.28
 5.12 Intr - 103120 102865  256  0  1  112   91   247 0.995  23.92
 5.11 Intr - 107217 107015  203  0  2   74   63    49 0.880  -1.84
 5.10 Intr - 108479 108270  210  2  0   49   95   102 0.890   5.19
 5.09 Intr - 109362 109216  147  0  0    2   91   197 0.115  10.91
 5.08 Intr - 114079 113979  101  2  2   72  115    20 0.460   2.01
 5.07 Intr - 114815 114674  142  2  1   56   76    95 0.636   4.11
 5.06 Intr - 117712 117637   76  0  1   84   53   129 0.928   7.60
 5.05 Intr - 118407 118260  148  1  1   62   85    -1 0.614  -4.63
 5.04 Intr - 120586 120480  107  0  2   94   93    61 0.778   6.14
 5.03 Intr - 120883 120801   83  1  2   66   91    46 0.954   0.22
 5.02 Intr - 123593 123475  119  0  2   83   95    60 0.879   5.46
 5.01 Init - 126057 125820  238  0  1   64   78    77 0.280   2.52
 5.00 Prom - 127630 127591   40                              -3.25

 6.00 Prom + 127975 128014   40                              -3.95
 6.01 Init + 134074 134156   83  0  2   61   20   139 0.045   4.89
 6.02 Intr + 155363 155484  122  2  2   79   25    73 0.001  -0.68
 6.03 Intr + 160129 160269  141  2  0   81   81    28 0.036   0.80
 6.04 Intr + 174151 174225   75  2  0   84  115     8 0.179   1.67
 6.05 Term + 207942 208075  134  1  2   94   42   126 0.886   5.87
 6.06 PlyA + 208513 208518    6                               1.05

 7.02 PlyA - 209660 209655    6                               1.05
 7.01 Sngl - 210682 210278  405  1  0   61   44   400 0.985  26.93
 7.00 Prom - 219550 219511   40                              -5.45

 8.06 PlyA - 219904 219899    6                               1.05
 8.05 Term - 221294 221140  155  0  2   60   44   116 0.851   1.50
 8.04 Intr - 227195 226987  209  1  2   77   90    70 0.821   3.90
 8.03 Intr - 234444 234301  144  2  0   36   86   146 0.926   7.68
 8.02 Intr - 245494 245404   91  2  1   63   60   162 0.854   9.03
 8.01 Intr - 246820 246700  121  1  1  109   47   183 0.653  15.45

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  18274  18159  116  2  2   89   49   120 0.844   5.95
S.002 Term +  61494  61583   90  2  0   54   41   115 0.860   0.14


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594r:55335418_55582785|GENSCAN_predicted_peptide_1|158_aa
MPRSLAHFPLWPLPRGRIRPLLVLACRYKSQRRIRPKPYEVARGPRRGPTNSVQQQDLSP
STQTTLQTGLSVIIHTHTHSALRNFTIKEVLYRLPWLLLRWSVHRVVAMVDEDPLPQVSG
QFLSVLLRVQIYSSHRVGLSPLPLRPPQEAAWRLMRED

>gi568815594r:55335418_55582785|GENSCAN_predicted_CDS_1|477_bp
atgccaaggtcccttgcacacttcccactctggccgcttccccgagggagaattaggccc
ctcttagtgttggcatgccggtataaatcccaacgcaggatccgccctaagccatatgag
gtagctaggggaccgcggagaggacccactaactccgtccagcagcaggacttgtcacca
tccacacaaacaacactgcaaacagggttgtctgtgatcattcacacacatacacattca
gccctccggaatttcaccatcaaggaagtactttatcgactcccgtggcttctccttcgt
tggtctgtgcacagagtcgtcgccatggtagatgaggatcctttaccccaggttagtggc
cagtttctttccgtgttgctgagagtccagatttattcatcacaccgggtgggtctcagc
cccttacccctaaggccaccacaagaggcggcatggcgcctcatgagagaggactag

>gi568815594r:55335418_55582785|GENSCAN_predicted_peptide_2|274_aa
MAPWAEAEHSALNPLRAVWLTLTAAFLLTLLLQLLPPGLLPGCAIFQDLIRYGKTKCGEP
SRPAACRAFDVPKRATPYFCSNFSISGITQSVIQGIHLVYRQSIIDCTKSGLAFMEKLIK
VGINEDVKGCSLHETAEGVHDGEMIFFPLLYHLSAVEWLPALVPYSISVPGSTFSKLASW
FAQNSRGGTVPGLRRLFECLYVSVFSNVMIHVVQYCFGLVYYVLVGLTVLSQVPMDGRNG
MSVVAFCQPVPWKGLSFLVGSAGSPPKGTLQSAW

>gi568815594r:55335418_55582785|GENSCAN_predicted_CDS_2|825_bp
atggctccctgggcggaggccgagcactcggcgctgaacccgctgcgcgcggtgtggctc
acgctgaccgccgccttcctgctgaccctactgctgcagctcctgccgcccggcctgctc
ccgggctgcgcgatcttccaggacctgatccgctatgggaaaaccaagtgtggggagccg
tcgcgccccgccgcctgccgagcctttgatgtccccaagagagccactccatacttctgc
tccaatttctcaatttcaggcattacacaatcagttatacaaggaatacacttggtatac
agacagtccatcattgactgcactaagtctggtttggcttttatggaaaagttgataaag
gttggtatcaatgaggatgtgaagggctgtagccttcacgaaactgccgaaggggtccat
gatggagaaatgatatttttcccacttttatatcatctcagtgctgtggaatggcttcct
gctttggtgccttactcaatctctgttcctgggagcaccttttccaagctggcttcatgg
tttgctcagaattctcggggcggcacagttccaggcttacgaagactcttcgagtgcctc
tacgtcagtgtcttctccaatgtcatgattcacgtcgtgcagtactgttttggacttgtc
tattatgtccttgttggcctaactgtgctgagccaagtgccaatggatggcaggaatggc
atgtctgtggtggcattctgccagccagtaccatggaaggggctgtcattcctggtgggc
agtgctggttctccccctaaaggaactttgcagagcgcttggtga

>gi568815594r:55335418_55582785|GENSCAN_predicted_peptide_3|264_aa
MKLQRKFNKQKKKALHSGEGTWRRVAAFTVSSLVDYTSVEMFLLKMMQGERQSYKVGIHN
FSILPHFPIKMKEKKLVRSPSLSEAGIHYPAQGVTFIFMAQCDCKSSSIQVPSRRMEDWL
EKQGDTGYASEPFPVFGAAAIAVLTVTPAARHHHHCNWAQEEGKNTDLLRTCGANHWLQK
SKQGLPSAQQEAVSLVGGLTEETNVSTDNGQEPEALEPRGNPKKLIQVREPRIMQFHMAT
SKQESVNDSKGLMKIHRSTCVSLF

>gi568815594r:55335418_55582785|GENSCAN_predicted_CDS_3|795_bp
atgaagttgcagcgaaagtttaataagcaaaagaagaaagctctccacagtggagagggg
acctggaggagggttgctgcttttacagtatcttcccttgtggactacaccagtgtcgaa
atgttcttgctaaaaatgatgcagggagaaagacaaagttacaaagttggcatccacaat
ttttccatcttgccccacttcccaattaaaatgaaggaaaaaaaattggtgaggtctcca
tccctgtctgaagcaggcatccattatcctgcccagggggtgacctttatcttcatggcc
cagtgtgactgcaagagctctagcatccaagttcccagcagaaggatggaggactggctg
gaaaaacaaggagacacagggtatgcatcagagccctttcctgtctttggagccgcagcc
attgctgtcctgactgttactcctgctgcccgccaccatcaccactgcaactgggcccag
gaagaagggaaaaacacagaccttctgaggacctgcggagcaaaccactggcttcagaaa
agcaaacagggacttccctctgcgcagcaggaagcagttagcctagtcggaggcttgact
gaagaaacaaatgtatccactgataatgggcaagagcctgaggctctggagccaaggggg
aaccctaaaaagctgattcaagtaagagaaccaaggatcatgcaattccacatggccacc
tcgaagcaggaatccgttaatgatagtaaaggactgatgaaaatccaccggtctacctgt
gtcagtttattttaa

>gi568815594r:55335418_55582785|GENSCAN_predicted_peptide_4|320_aa
MAAAAPGNGRASAPRLLLLFLVPLLWAPAAVRAGPDEDLSHRNKEPPAPAQQLQPQPVAV
QGPEPARVEKIFTPAAPVHTNKEDPATQTNLGFIHAFVAAISVIIVSELGDKTFFIAAIM
AMRYNRLTVLAGAMLALGLMTCLSVLFGYATTVIPRVYTYYVSTVLFAIFGIRMLREGLK
MSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDVETGTSITVPQKKWLHFISPIFVQA
LTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTV
LLMELDCFSAPSVKQTALRQ

>gi568815594r:55335418_55582785|GENSCAN_predicted_CDS_4|963_bp
atggcggccgcggctccagggaacggccgcgcatcggcgccccggctgcttctgctcttt
ctggttccgctgctgtgggccccggctgcggtccgggccggcccagatgaagaccttagc
caccggaacaaagaaccgccggcgccggcccagcagctgcagccgcagcctgtggctgtg
cagggccccgagccggcccgggtcgagaaaatatttacaccagcagctccagttcatacc
aataaagaagatcctgctacccaaactaatttgggatttatccatgcatttgtcgctgcc
atatcagttattattgtatctgaattgggtgataagacattttttatagcagccatcatg
gcaatgcgctataaccgcctgaccgtgctggctggtgcaatgcttgccttgggactaatg
acatgcttgtcagttttgtttggctatgccaccacagtcatccccagggtctatacatac
tatgtttcaactgtattatttgccatttttggcattagaatgcttcgggaaggcttaaag
atgagccctgatgagggtcaagaggaactggaagaagttcaagctgaattaaagaagaaa
gatgaagaatttcaacgaaccaaacttttaaatggaccgggagatgttgaaacgggtaca
agcataacagtacctcagaaaaagtggttgcattttatttcacccatttttgttcaagct
cttacattaacattcttagcagaatggggtgatcgctctcaactaactacaattgtattg
gcagctagagaggacccctatggtgtagccgtgggtggaactgtggggcactgcctgtgc
acgggattggcagtaattggaggaagaatgatagcacagaaaatctctgtcagaactgtg
ctcttgatggagctggactgcttcagtgctcctagcgtcaagcagactgctttaaggcaa
tga

>gi568815594r:55335418_55582785|GENSCAN_predicted_peptide_5|646_aa
MTTFPVTAVLPHGGPGLHCNESIFHQHLWPRKSSSTLLIKVAATFVIWFGRLKKITQVEN
FEKDQTGRQKGKPYNPSNKISSSAHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKE
MCTVEEPNEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCH
EHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAER
RRELGIEESLPETAADKSQDSGSDNRINTVSLKEALERFDHSPTPSASSRSSRKSSHTAV
SDPSSTPTKIPTDTSTPPRQHLPAHEKMVQRRSSFSSQFSAQLGAMQHLKDQLEQRTRMI
EANIHRQQEELRKIQEQLQMVHGQGLQMFLQQSNPGLNFGSVQLSSGNSSNIQQLAPINM
QGQVVPTNQIQSGMNTGHIGTTQHMIQQQTLQSTSTQSQQNVLSGHSQQTSLPSQTQSTL
TAPLYNTMVISQPAAGSMVQIPSSMPQNSTQSAAVTTFTQDRQIRFSQGQQLVTKLVTAP
VACGAVMVPSTMLMGQVVTAYPTFATQQQQSQTLSVTQQQQQQSSQEQQLTSVQQPSQAQ
LTQPPQQFLQSTFPQSHHQQHQSQQQQQLSRHRTDSLPDPSKVQPQ

>gi568815594r:55335418_55582785|GENSCAN_predicted_CDS_5|1941_bp
atgactacttttcctgtaacagctgttttgcctcatggaggtccaggtcttcattgcaat
gaaagcatctttcaccagcatctctggcctagaaagagcagcagtaccttgcttataaaa
gttgctgccactttcgtcatctggtttgggagattaaaaaaaatcactcaggtagaaaat
tttgaaaaggaccagactgggagacaaaaaggaaaaccatataatcctagcaataaaata
tcctcttcagcacacaatggttttgaaggaactatacaacgcacacataggccatcttat
gaagatagagtttgttttgtagctactgtcaggttagctacacctcagttcatcaaggaa
atgtgcactgttgaagaacccaatgaagagtttacatctagacatagtttagaatggaag
tttctgtttctagatcacagggcaccacccataatagggtatttgccatttgaagttctg
ggaacatcaggctatgattactatcatgtggatgacctagaaaatttggcaaaatgtcat
gagcacttaatgcaatatgggaaaggcaaatcatgttattataggttcctgactaagggg
caacagtggatttggcttcagactcattattatatcacttaccatcagtggaattcaagg
ccagagtttattgtttgtactcacactgtagtaagttatgcagaagttagggctgaaaga
cgacgagaacttggcattgaagagtctcttcctgagacagctgctgacaaaagccaagat
tctgggtcagataatcgtataaacacagtcagtctcaaggaagcattggaaaggtttgat
cacagcccaaccccttctgcctcttctcggagttcaagaaaatcatctcacacggccgtc
tcagacccttcctcaacaccaaccaagatcccgacggatacgagcactccacccaggcag
catttaccagctcatgagaagatggtgcaaagaaggtcatcatttagtagtcagttttca
gctcaattaggagccatgcaacatctgaaagaccaattggaacaacggacacgcatgata
gaagcaaatattcatcggcaacaagaagaactaagaaaaattcaagaacaacttcagatg
gtccatggtcaggggctgcagatgtttttgcaacaatcaaatcctgggttgaattttggt
tccgttcaactttcttctggaaattcatctaatatccagcaacttgcacctataaatatg
caaggccaagttgttcctactaaccagattcaaagtggaatgaatactggacacattggc
acaactcagcacatgatacaacaacagactttacagagtacatcaactcagagtcaacaa
aatgtactgagtgggcacagtcagcaaacatctctacccagtcagacacagagcactctt
acagccccactgtataacactatggtgatttctcagcctgcagccggaagcatggtccag
attccatctagtatgccacaaaacagcacccagagtgctgcagtaactacattcactcag
gacaggcagataagattttctcaaggtcaacaacttgtgaccaaattagtgactgctcct
gtagcttgtggggcagtcatggtacctagtactatgcttatgggccaggtggtgactgca
tatcctacttttgctacacaacagcaacagtcacagacattgtcagtaacgcagcagcag
cagcagcagagctcccaggagcagcagctcacttcagttcagcaaccatctcaggctcag
ctgacccagccaccgcaacaatttttacagagcaccttccctcagtcacatcaccagcaa
catcagtctcagcaacagcagcaactcagccggcacaggactgacagcttgcccgaccct
tccaaggttcaaccacagtag

>gi568815594r:55335418_55582785|GENSCAN_predicted_peptide_6|184_aa
MPIVSPEDPPMGQDVEVEDSDVDDPDPAWLNPQTWNLQMQKANCIDQMDLTDIHKTFHPT
TAEYTLFSNYISYYPLLIVVIHKPQDKPLHSTKGVTLSNTSFEFQCTQNDPPKLATKAWQ
EIILTRLSVICKSSSLNSGKGNNRAHTGGKMAKQMIIQDDSVFKAEKNIFANAQKKIYKI
IQWC

>gi568815594r:55335418_55582785|GENSCAN_predicted_CDS_6|555_bp
atgcctattgtttctcctgaagaccctccaatgggacaagatgtggaggtggaggacagt
gatgttgatgatcctgaccccgcttggttgaatccacagacgtggaaccttcagatgcag
aaggccaactgtatagaccaaatggacctaacagacatacacaaaacattccacccaaca
acagcagaatacacattattctcaaactacatcagctattatcccctccttattgtagtc
attcacaaaccccaggataagccccttcactccacgaagggtgtgaccctctccaatacc
tcttttgaatttcaatgtacacaaaatgatcccccaaaactggccactaaggcctggcag
gaaataattcttactcgactttcagtcatttgcaaatcatcttccttaaactcaggaaaa
ggtaataacagagcccatactggaggcaaaatggcaaagcagatgatcattcaagatgat
tccgttttcaaggctgaaaagaacatatttgcaaatgcacagaaaaagatctacaagatc
atacagtggtgttaa

>gi568815594r:55335418_55582785|GENSCAN_predicted_peptide_7|134_aa
MGRRGGQLLRGTPALPAPGPRAAVRSPNGRRCRPRAGSVSGGGSGVPFLGSARLLASDSS
DRARVRGLAARRSVSLLPSTRASRSPSPPLAFVDFFPPVKLGFLELALALWPLECNFLHA
APQSLYSLKVFVAL

>gi568815594r:55335418_55582785|GENSCAN_predicted_CDS_7|405_bp
atggggcgccggggcggccagctcctccggggaacccccgccctcccggcgcccggcccg
cgtgccgcagtccgcagtccgaacggccgccgttgccggccgcgggctggttccgttagt
ggtggtggttccggggttccgttcctaggcagcgcgcggctattagcgtctgactccagc
gaccgcgcgcgggttcgagggttggcggcgaggcgctcggtttctcttcttccgtccacc
cgcgcttcccgttccccgtcaccgccgctggcgtttgtagatttctttccgccagtgaag
ctgggttttctggagttggctctggcgctctggcccctggagtgtaatttcctacacgca
gcgccgcagagtttatattctttgaaagtgtttgtagctttgtag

>gi568815594r:55335418_55582785|GENSCAN_predicted_peptide_8|239_aa
DPNEDTEWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDEFD
EEDMQAVETYRKKRLQEWKALKKKQKFGELREISGNQYVNEVTNAEEDVWVIIHLYRSSI
PMCLLVNQHLSLLARKFPETKFVKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIEC
GGINLKLEELEWKLAEVGAIQTDLEENPRKDMVDMMVSSIRNTSIHDDSDSSNSDNDTK

>gi568815594r:55335418_55582785|GENSCAN_predicted_CDS_8|720_bp
gatcccaatgaagatacagaatggaatgacattttaagagatttcggcattcttcctcct
aaagaagagtcaaaagatgaaattgaagaaatggttttacgtttacagaaagaagcaatg
gtgaaaccatttgaaaagatgactcttgcacagctaaaggaagctgaagatgaatttgat
gaagaagatatgcaggctgttgaaacatatagaaagaagcggttacaggaatggaaagct
cttaagaaaaaacaaaaatttggagaattaagagaaatttctggaaatcagtatgtgaat
gaagtcacaaatgcagaagaagatgtgtgggttataattcatctatacagatcaagcatc
ccaatgtgtttgttggttaaccagcatcttagtcttctagcaagaaagtttccagaaact
aaatttgttaaagccatcgtgaatagctgtattcaacactaccatgacaattgtttacca
acaatttttgtgtataaaaatggtcagatagaagccaaattcattggaattatagaatgt
ggagggataaatctcaagctggaagaacttgaatggaagctagcagaagttggagcaata
cagactgatttggaagaaaaccccagaaaagacatggtagatatgatggtatcttcaatt
agaaacacttctattcatgatgacagtgatagctccaacagtgataatgataccaaatag