Result of FASTA (omim) for pF1KSDA0280
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0280, 244 aa
  1>>>pF1KSDA0280 244 - 244 aa - 244 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5807+/-0.000368; mu= -3.8456+/- 0.023
 mean_var=245.4165+/-51.644, 0's: 0 Z-trim(121.4): 12  B-trim: 735 in 1/58
 Lambda= 0.081870
 statistics sampled from 38000 (38014) to 38000 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.446), width:  16
 Scan time:  4.600

The best scores are:                                      opt bits E(85289)
NP_001272979 (OMIM: 616316) protein FAM168A isofor ( 244) 1695 212.3 6.3e-55
NP_055974 (OMIM: 616316) protein FAM168A isoform 2 ( 235) 1341 170.5 2.4e-42
XP_016872904 (OMIM: 616316) PREDICTED: protein FAM ( 193)  992 129.2 5.2e-30
XP_016872905 (OMIM: 616316) PREDICTED: protein FAM ( 138)  725 97.5 1.2e-20
NP_001272980 (OMIM: 616316) protein FAM168A isofor ( 129)  366 55.1 6.8e-08


>>NP_001272979 (OMIM: 616316) protein FAM168A isoform 1   (244 aa)
 initn: 1695 init1: 1695 opt: 1695  Z-score: 1107.1  bits: 212.3 E(85289): 6.3e-55
Smith-Waterman score: 1695; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KSD MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
              190       200       210       220       230       240

           
pF1KSD PPHW
       ::::
NP_001 PPHW
           

>>NP_055974 (OMIM: 616316) protein FAM168A isoform 2 [Ho  (235 aa)
 initn: 1275 init1: 1275 opt: 1341  Z-score: 881.4  bits: 170.5 E(85289): 2.4e-42
Smith-Waterman score: 1605; 96.3% identity (96.3% similar) in 244 aa overlap (1-244:1-235)

               10        20        30        40        50        60
pF1KSD MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::         :
NP_055 MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAP---------A
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KSD TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KSD PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KSD YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
             180       190       200       210       220       230 

           
pF1KSD PPHW
       ::::
NP_055 PPHW
           

>>XP_016872904 (OMIM: 616316) PREDICTED: protein FAM168A  (193 aa)
 initn: 1091 init1: 985 opt: 992  Z-score: 659.8  bits: 129.2 E(85289): 5.2e-30
Smith-Waterman score: 1231; 79.1% identity (79.1% similar) in 244 aa overlap (1-244:1-193)

               10        20        30        40        50        60
pF1KSD MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
XP_016 MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAP----------
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KSD TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
                      :                          ::::::::::::::::::
XP_016 ---------------G--------------------------YTAGTPYKVPPTQSNTAP
                                                        60         

              130       140       150       160       170       180
pF1KSD PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
      70        80        90       100       110       120         

              190       200       210       220       230       240
pF1KSD YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
     130       140       150       160       170       180         

           
pF1KSD PPHW
       ::::
XP_016 PPHW
     190   

>>XP_016872905 (OMIM: 616316) PREDICTED: protein FAM168A  (138 aa)
 initn: 710 init1: 710 opt: 725  Z-score: 491.4  bits: 97.5 E(85289): 1.2e-20
Smith-Waterman score: 739; 56.1% identity (56.6% similar) in 244 aa overlap (1-244:1-138)

               10        20        30        40        50        60
pF1KSD MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
       :::::::::::::::::::::::::::::::::::::::::                   
XP_016 TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAF-------------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KSD PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
                                                                   
XP_016 ------------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KSD YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
                                  .::::::::::::::::::::::::::::::::
XP_016 ---------------------------STLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
                                        110       120       130    

           
pF1KSD PPHW
       ::::
XP_016 PPHW
           

>>NP_001272980 (OMIM: 616316) protein FAM168A isoform 3   (129 aa)
 initn: 610 init1: 366 opt: 366  Z-score: 262.7  bits: 55.1 E(85289): 6.8e-08
Smith-Waterman score: 649; 52.5% identity (52.9% similar) in 244 aa overlap (1-244:1-129)

               10        20        30        40        50        60
pF1KSD MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::         :
NP_001 MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAP---------A
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KSD TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAP
       :::::::::::::::::::::::::::::::::::::::::                   
NP_001 TLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAF-------------------
              60        70        80        90                     

              130       140       150       160       170       180
pF1KSD PPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
                                                                   
NP_001 ------------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KSD YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
                                  .::::::::::::::::::::::::::::::::
NP_001 ---------------------------STLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
                                       100       110       120     

           
pF1KSD PPHW
       ::::
NP_001 PPHW
           




244 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:05:36 2016 done: Thu Nov  3 01:05:37 2016
 Total Scan time:  4.600 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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