Result of FASTA (ccds) for pF1KSDA0272
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0272, 729 aa
  1>>>pF1KSDA0272 729 - 729 aa - 729 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5315+/-0.000924; mu= 6.0770+/- 0.056
 mean_var=169.2065+/-34.088, 0's: 0 Z-trim(111.6): 23  B-trim: 0 in 0/52
 Lambda= 0.098597
 statistics sampled from 12514 (12527) to 12514 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.385), width:  16
 Scan time:  3.550

The best scores are:                                      opt bits E(32554)
CCDS2853.1 BAP1 gene_id:8314|Hs108|chr3            ( 729) 4825 698.7 8.1e-201
CCDS55669.1 UCHL5 gene_id:51377|Hs108|chr1         ( 316)  583 95.1 1.8e-19
CCDS55670.1 UCHL5 gene_id:51377|Hs108|chr1         ( 326)  583 95.1 1.8e-19
CCDS55668.1 UCHL5 gene_id:51377|Hs108|chr1         ( 328)  583 95.1 1.8e-19
CCDS1378.1 UCHL5 gene_id:51377|Hs108|chr1          ( 329)  572 93.5 5.4e-19


>>CCDS2853.1 BAP1 gene_id:8314|Hs108|chr3                 (729 aa)
 initn: 4825 init1: 4825 opt: 4825  Z-score: 3718.8  bits: 698.7 E(32554): 8.1e-201
Smith-Waterman score: 4825; 100.0% identity (100.0% similar) in 729 aa overlap (1-729:1-729)

               10        20        30        40        50        60
pF1KSD MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD KEVVEATDSREKTGMVRPGEPLSGEKYSPKELLALLKCVEAEIANYEACLKEEVEKRKKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 KEVVEATDSREKTGMVRPGEPLSGEKYSPKELLALLKCVEAEIANYEACLKEEVEKRKKF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD KIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 KIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKR
              670       680       690       700       710       720

                
pF1KSD SRPYKAKRQ
       :::::::::
CCDS28 SRPYKAKRQ
                

>>CCDS55669.1 UCHL5 gene_id:51377|Hs108|chr1              (316 aa)
 initn: 725 init1: 149 opt: 583  Z-score: 463.2  bits: 95.1 E(32554): 1.8e-19
Smith-Waterman score: 644; 40.5% identity (68.2% similar) in 289 aa overlap (2-284:4-272)

                  10        20        30           40        50    
pF1KSD   MNKG-WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIE
          : : :  .:::::.:: :.. :: .:.:::::..:. .      ::.:.::::::  
CCDS55 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
               10        20        30        40        50        60

           60        70        80        90       100         110  
pF1KSD ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTL
        ..            ::..:. ....:::.:.: :.:::.:..::::::.  :  :: ::
CCDS55 GEEPA---------GSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETL
                        70        80        90       100       110 

            120       130       140       150       160       170  
pF1KSD SRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVS
       :..:.:...:.   :: :..:.  . ..::: :: .  ..  :    ....  .::::::
CCDS55 SEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTK----TSAKEEDAFHFVS
             120       130       140       150           160       

            180       190       200       210       220       230  
pF1KSD YVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMA
       :::..:::.:::::.  ::: :  ..:. : . .: :: .::   . ::    :::::::
CCDS55 YVPVNGRLYELDGLREGPIDLGACNQDD-WISAVRPVIEKRIQKYSEGE----IRFNLMA
       170       180       190        200       210           220  

            240       250       260       270       280       290  
pF1KSD VVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKS
       .: ::.. :: .  . ...:: . : ..     ..   ::.. .....: ::        
CCDS55 IVSDRKMIYEQK--IAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRY
            230         240       250       260       270       280

            300       310       320       330       340       350  
pF1KSD PLVLEANRAPAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTP
                                                                   
CCDS55 KIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKGK                        
              290       300       310                              

>>CCDS55670.1 UCHL5 gene_id:51377|Hs108|chr1              (326 aa)
 initn: 725 init1: 149 opt: 583  Z-score: 463.0  bits: 95.1 E(32554): 1.8e-19
Smith-Waterman score: 644; 40.5% identity (68.2% similar) in 289 aa overlap (2-284:4-272)

                  10        20        30           40        50    
pF1KSD   MNKG-WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIE
          : : :  .:::::.:: :.. :: .:.:::::..:. .      ::.:.::::::  
CCDS55 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
               10        20        30        40        50        60

           60        70        80        90       100         110  
pF1KSD ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTL
        ..            ::..:. ....:::.:.: :.:::.:..::::::.  :  :: ::
CCDS55 GEEPA---------GSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETL
                        70        80        90       100       110 

            120       130       140       150       160       170  
pF1KSD SRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVS
       :..:.:...:.   :: :..:.  . ..::: :: .  ..  :    ....  .::::::
CCDS55 SEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTK----TSAKEEDAFHFVS
             120       130       140       150           160       

            180       190       200       210       220       230  
pF1KSD YVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMA
       :::..:::.:::::.  ::: :  ..:. : . .: :: .::   . ::    :::::::
CCDS55 YVPVNGRLYELDGLREGPIDLGACNQDD-WISAVRPVIEKRIQKYSEGE----IRFNLMA
       170       180       190        200       210           220  

            240       250       260       270       280       290  
pF1KSD VVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKS
       .: ::.. :: .  . ...:: . : ..     ..   ::.. .....: ::        
CCDS55 IVSDRKMIYEQK--IAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRY
            230         240       250       260       270       280

            300       310       320       330       340       350  
pF1KSD PLVLEANRAPAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTP
                                                                   
CCDS55 KIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKFEKHFEKTLLGK              
              290       300       310       320                    

>>CCDS55668.1 UCHL5 gene_id:51377|Hs108|chr1              (328 aa)
 initn: 725 init1: 149 opt: 583  Z-score: 463.0  bits: 95.1 E(32554): 1.8e-19
Smith-Waterman score: 644; 40.5% identity (68.2% similar) in 289 aa overlap (2-284:4-272)

                  10        20        30           40        50    
pF1KSD   MNKG-WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIE
          : : :  .:::::.:: :.. :: .:.:::::..:. .      ::.:.::::::  
CCDS55 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
               10        20        30        40        50        60

           60        70        80        90       100         110  
pF1KSD ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTL
        ..            ::..:. ....:::.:.: :.:::.:..::::::.  :  :: ::
CCDS55 GEEPA---------GSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETL
                        70        80        90       100       110 

            120       130       140       150       160       170  
pF1KSD SRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVS
       :..:.:...:.   :: :..:.  . ..::: :: .  ..  :    ....  .::::::
CCDS55 SEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTK----TSAKEEDAFHFVS
             120       130       140       150           160       

            180       190       200       210       220       230  
pF1KSD YVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMA
       :::..:::.:::::.  ::: :  ..:. : . .: :: .::   . ::    :::::::
CCDS55 YVPVNGRLYELDGLREGPIDLGACNQDD-WISAVRPVIEKRIQKYSEGE----IRFNLMA
       170       180       190        200       210           220  

            240       250       260       270       280       290  
pF1KSD VVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKS
       .: ::.. :: .  . ...:: . : ..     ..   ::.. .....: ::        
CCDS55 IVSDRKMIYEQK--IAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRY
            230         240       250       260       270       280

            300       310       320       330       340       350  
pF1KSD PLVLEANRAPAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTP
                                                                   
CCDS55 KIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK            
              290       300       310       320                    

>>CCDS1378.1 UCHL5 gene_id:51377|Hs108|chr1               (329 aa)
 initn: 725 init1: 149 opt: 572  Z-score: 454.5  bits: 93.5 E(32554): 5.4e-19
Smith-Waterman score: 633; 43.1% identity (68.7% similar) in 262 aa overlap (2-257:4-245)

                  10        20        30           40        50    
pF1KSD   MNKG-WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIE
          : : :  .:::::.:: :.. :: .:.:::::..:. .      ::.:.::::::  
CCDS13 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
               10        20        30        40        50        60

           60        70        80        90       100         110  
pF1KSD ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTL
        ..            ::..:. ....:::.:.: :.:::.:..::::::.  :  :: ::
CCDS13 GEEPA---------GSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETL
                        70        80        90       100       110 

            120       130       140       150       160       170  
pF1KSD SRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVS
       :..:.:...:.   :: :..:.  . ..::: :: .  ..  :    ....  .::::::
CCDS13 SEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTK----TSAKEEDAFHFVS
             120       130       140       150           160       

            180       190       200       210       220       230  
pF1KSD YVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMA
       :::..:::.:::::.  ::: :  ..:. : . .: :: .::   . ::    :::::::
CCDS13 YVPVNGRLYELDGLREGPIDLGACNQDD-WISAVRPVIEKRIQKYSEGE----IRFNLMA
       170       180       190        200       210           220  

            240       250       260       270       280       290  
pF1KSD VVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKS
       .: ::.. :: ..  :.  :: . :                                   
CCDS13 IVSDRKMIYEQKIAELQ--RQLAEEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKR
            230         240       250       260       270       280




729 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:01:19 2016 done: Thu Nov  3 01:01:19 2016
 Total Scan time:  3.550 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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