Result of FASTA (omim) for
pF1KSDA0264
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0264, 414 aa
1>>>pF1KSDA0264 414 - 414 aa - 414 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9890+/-0.000465; mu= 8.9586+/- 0.029
mean_var=113.5642+/-22.217, 0's: 0 Z-trim(113.2): 26 B-trim: 440 in 1/53
Lambda= 0.120352
statistics sampled from 22385 (22400) to 22385 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.263), width: 16
Scan time: 7.820
The best scores are: opt bits E(85289)
NP_055899 (OMIM: 611989) 28S ribosomal protein S27 ( 414) 2689 478.2 1.7e-134
NP_001273680 (OMIM: 611989) 28S ribosomal protein ( 358) 2326 415.1 1.4e-115
NP_001273677 (OMIM: 611989) 28S ribosomal protein ( 428) 2091 374.4 3.1e-103
XP_005248658 (OMIM: 615484) PREDICTED: pentatricop ( 350) 192 44.6 0.00047
NP_079030 (OMIM: 615484) pentatricopeptide repeat- ( 388) 192 44.6 0.00051
>>NP_055899 (OMIM: 611989) 28S ribosomal protein S27, mi (414 aa)
initn: 2689 init1: 2689 opt: 2689 Z-score: 2535.8 bits: 478.2 E(85289): 1.7e-134
Smith-Waterman score: 2689; 99.8% identity (99.8% similar) in 414 aa overlap (1-414:1-414)
10 20 30 40 50 60
pF1KSD MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD FERKLPVSSLTISRLIDNISSREEIDHAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FERKLPVSSLTISRLIDNISSREEIDHAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD AQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLDAVLKALTSADGASEEQ
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
NP_055 RAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLGAVLKALTSADGASEEQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLV
310 320 330 340 350 360
370 380 390 400 410
pF1KSD KEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQKAAKASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQKAAKASA
370 380 390 400 410
>>NP_001273680 (OMIM: 611989) 28S ribosomal protein S27, (358 aa)
initn: 2326 init1: 2326 opt: 2326 Z-score: 2196.1 bits: 415.1 E(85289): 1.4e-115
Smith-Waterman score: 2326; 99.7% identity (99.7% similar) in 358 aa overlap (57-414:1-358)
30 40 50 60 70 80
pF1KSD RYLLSSAYVDSHKWEAREKEHYCLADLASLMDKTFERKLPVSSLTISRLIDNISSREEID
::::::::::::::::::::::::::::::
NP_001 MDKTFERKLPVSSLTISRLIDNISSREEID
10 20 30
90 100 110 120 130 140
pF1KSD HAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KSD LMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGA
100 110 120 130 140 150
210 220 230 240 250 260
pF1KSD SLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKV
160 170 180 190 200 210
270 280 290 300 310 320
pF1KSD AASPEDIKLCREALDVLDAVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSK
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
NP_001 AASPEDIKLCREALDVLGAVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSK
220 230 240 250 260 270
330 340 350 360 370 380
pF1KSD LPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDL
280 290 300 310 320 330
390 400 410
pF1KSD VQLIQREQQQREQAKQEYQAQKAAKASA
::::::::::::::::::::::::::::
NP_001 VQLIQREQQQREQAKQEYQAQKAAKASA
340 350
>>NP_001273677 (OMIM: 611989) 28S ribosomal protein S27, (428 aa)
initn: 2091 init1: 2091 opt: 2091 Z-score: 1974.4 bits: 374.4 E(85289): 3.1e-103
Smith-Waterman score: 2651; 96.5% identity (96.5% similar) in 428 aa overlap (1-414:1-428)
10 20 30 40 50 60
pF1KSD MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKT
10 20 30 40 50 60
70 80 90 100
pF1KSD FERKLPVSSLTISRLIDNISSREEIDHAEYYLYK--------------FRHSPNCWYLRN
:::::::::::::::::::::::::::::::::: ::::::::::::
NP_001 FERKLPVSSLTISRLIDNISSREEIDHAEYYLYKKGECSSSNPQNYSRFRHSPNCWYLRN
70 80 90 100 110 120
110 120 130 140 150 160
pF1KSD WTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSVVFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSVVFE
130 140 150 160 170 180
170 180 190 200 210 220
pF1KSD VMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLY
190 200 210 220 230 240
230 240 250 260 270 280
pF1KSD GYALLGKVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLDAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
NP_001 GYALLGKVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLGAV
250 260 270 280 290 300
290 300 310 320 330 340
pF1KSD LKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGK
310 320 330 340 350 360
350 360 370 380 390 400
pF1KSD IESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQA
370 380 390 400 410 420
410
pF1KSD QKAAKASA
::::::::
NP_001 QKAAKASA
>>XP_005248658 (OMIM: 615484) PREDICTED: pentatricopepti (350 aa)
initn: 103 init1: 78 opt: 192 Z-score: 193.8 bits: 44.6 E(85289): 0.00047
Smith-Waterman score: 200; 21.9% identity (56.6% similar) in 288 aa overlap (23-281:40-322)
10 20 30 40 50
pF1KSD MAASIVRRGMLLARQVVLPQLSPAG-KRYLLSSAYVDSHKWEAREKEHYC-L
: : :::::.. : .... .. : :
XP_005 FRPSNRVLLQALQILVYPGVGGSGSVSCRCPLGAKRYLLTDNVVKLKEFQQKKVAVACNL
10 20 30 40 50 60
60 70 80 90 100
pF1KSD ADLASLMDKTFERKLPVSSLTIS----RLIDNISSREEIDHAEYYLYKFRHSPNCWYLRN
. . .....:: ..: .. :. ::.... :. .:.. :. : .:
XP_005 SGTKETYFRNLKKKLTQNKLILKGELITLLHLCESRDHVELAKNVIYRY-HAEN----KN
70 80 90 100 110 120
110 120 130 140 150 160
pF1KSD WTIHTW------IRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDA
.:. . .: : . : ...:. . .. :.: :. .::.::: .. : .::.:
XP_005 FTLGEYKFGPLFVRLCYELDLEESAVELMKDQHLRGFFSDSTSFNILMDMLFIKGKYKSA
130 140 150 160 170 180
170 180 190 200
pF1KSD LSVVFEVMMQEAFEVPSTQLLSLYVLFH---------CLAKKTDFSWEEE------RNFG
:.:..:. :.. . .: .:.. . .. : . . . . : :.
XP_005 LQVLIEMKNQDVKFTKDTYVLAFAICYKLNSPESFKICTTLREEALLKGEILSRRASCFA
190 200 210 220 230 240
210 220 230 240 250 260
pF1KSD ASLLLPGLKQKNSVGFSSQLYGYALLGKVELQQG-LRAVYHNMP-LIWKPGYLDRALQVM
..: : .. ..:.. ::... .. ..:. . .: ...: :. : . .:..
XP_005 VALALNQNEMAKAVSIFSQIMNPESIACINLNLAKVREKVKDVPALVAKFDEIYGTLHIT
250 260 270 280 290 300
270 280 290 300 310 320
pF1KSD EKVAASPEDIKLCREALDVLDAVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETE
.:... : ::. :
XP_005 GQVTTDSLDAVLCHTPRDRKSHTLLLNKRMVSRRTFQPLSQSLLAE
310 320 330 340 350
>>NP_079030 (OMIM: 615484) pentatricopeptide repeat-cont (388 aa)
initn: 103 init1: 78 opt: 192 Z-score: 193.1 bits: 44.6 E(85289): 0.00051
Smith-Waterman score: 194; 21.2% identity (55.9% similar) in 358 aa overlap (23-365:40-363)
10 20 30 40 50
pF1KSD MAASIVRRGMLLARQVVLPQLSPAG-KRYLLSSAYVDSHKWEAREKEHYC-L
: : :::::.. : .... .. : :
NP_079 FRPSNRVLLQALQILVYPGVGGSGSVSCRCPLGAKRYLLTDNVVKLKEFQQKKVAVACNL
10 20 30 40 50 60
60 70 80 90 100
pF1KSD ADLASLMDKTFERKLPVSSLTIS----RLIDNISSREEIDHAEYYLYKFRHSPNCWYLRN
. . .....:: ..: .. :. ::.... :. .:.. :. : .:
NP_079 SGTKETYFRNLKKKLTQNKLILKGELITLLHLCESRDHVELAKNVIYRY-HAEN----KN
70 80 90 100 110 120
110 120 130 140 150 160
pF1KSD WTIHTW------IRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDA
.:. . .: : . : ...:. . .. :.: :. .::.::: .. : .::.:
NP_079 FTLGEYKFGPLFVRLCYELDLEESAVELMKDQHLRGFFSDSTSFNILMDMLFIKGKYKSA
130 140 150 160 170 180
170 180 190 200 210
pF1KSD LSVVFEVMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGASLLLPG--LKQKNS
:.:..:. :.. . .: .:.. . : .. :.. .. :: : :... :
NP_079 LQVLIEMKNQDVKFTKDTYVLAFAI---CYKLNSPESFKICTTLREEALLKGEILSRRAS
190 200 210 220 230 240
220 230 240 250 260 270
pF1KSD VGFSSQLYGYALLGKVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCRE
:. : :.. :. ... ... . : .: :..: .: . .
NP_079 C-FAVALA----LNQNEMAKAV-SIFSQ---IMNP----------ESIACINLNIIIHIQ
250 260 270 280
280 290 300 310 320 330
pF1KSD ALDVLDAVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSK-LPQYLERFKAL
. ..:. ..:.: .: : . :. . . ::... .. :. : .: . .: .
NP_079 S-NMLENLIKTLKNA--AEGNLSKFVKRHVFSEEVLAKV----REKVKDVPALVAKFDEI
290 300 310 320 330
340 350 360 370 380 390
pF1KSD HSKLQALGKIESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQR
.. :. :.. ...: .. . ... :
NP_079 YGTLHITGQVTTDSLDAVLCHTPRDRKSHTLLLNKRMVSRRTFQPLSQSLLAE
340 350 360 370 380
414 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:59:17 2016 done: Thu Nov 3 00:59:18 2016
Total Scan time: 7.820 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]