GENSCAN 1.0	Date run:  3-Nov-116	Time: 00:53:17

Sequence gi568815593f:134435858_134679314 : 243457 bp : 47.89% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    415    474   60  0  0  114   57    14 0.501   2.41
 1.02 Intr +    649    793  145  0  1   55  105    31 0.538   1.36
 1.03 Intr +  24752  24997  246  0  0   90   84    67 0.170   3.93
 1.04 Term +  26218  26252   35  2  2   85   42    38 0.102  -3.35
 1.05 PlyA +  26737  26742    6                               1.05

 2.00 Prom +  39772  39811   40                              -2.06
 2.01 Init +  50936  51012   77  1  2   81   89    40 0.927   3.96
 2.02 Intr +  55548  55676  129  0  0  132   -2    86 0.460   3.81
 2.03 Intr +  55927  56050  124  1  1   82   49     2 0.261  -3.71
 2.04 Term +  56272  56394  123  0  0  141   38    55 0.515   4.18
 2.05 PlyA +  57608  57613    6                               1.05

 3.00 Prom +  64266  64305   40                              -4.56
 3.01 Init +  72961  73028   68  0  2   93   61    56 0.202   3.94
 3.02 Intr +  73129  73215   87  1  0  119   95    18 0.421   4.69
 3.03 Intr + 102132 102226   95  0  2  141   90   168 0.971  21.91
 3.04 Intr + 108288 108498  211  1  1   20   46   165 0.549   3.47
 3.05 Intr + 108609 108681   73  0  1   60  105   -25 0.396  -4.19
 3.06 Intr + 116195 116352  158  1  2  122   83   225 0.706  24.21
 3.07 Intr + 119474 119559   86  2  2   99   72    34 0.422   2.36
 3.08 Intr + 120283 120335   53  2  2   96   80   -13 0.371  -2.67
 3.09 Intr + 123780 123898  119  2  2   80   53    58 0.589   0.76
 3.10 Intr + 123973 124133  161  1  2  124   69   219 0.994  23.23
 3.11 Intr + 124889 125100  212  0  2  126   80   412 0.999  42.83
 3.12 Intr + 126343 126510  168  0  0  118   90   179 0.646  21.24
 3.13 Intr + 128637 128753  117  2  0   67   91   141 0.993  12.96
 3.14 Intr + 130259 130723  465  1  0  128   96   899 0.996  88.02
 3.15 Intr + 134014 134079   66  0  0  113   82     7 0.736   1.70
 3.16 Intr + 137788 137905  118  0  1   70   80    68 0.875   4.24
 3.17 Intr + 140911 141039  129  2  0   79   92   120 0.950  12.17
 3.18 Term + 142637 143460  824  0  2  108   35   823 0.612  72.26
 3.19 PlyA + 143932 143937    6                               1.05

 4.03 PlyA - 144720 144715    6                              -0.45
 4.02 Term - 145893 145633  261  0  0   75   53   124 0.528   3.13
 4.01 Init - 147250 147179   72  1  0   83   60    48 0.275   2.75
 4.00 Prom - 168033 167994   40                              -4.96

 5.05 PlyA - 170015 170010    6                               1.05
 5.04 Term - 171209 171093  117  2  0   95   41   117 0.999   6.24
 5.03 Intr - 172646 172515  132  2  0   80   93   101 0.998  10.64
 5.02 Intr - 173817 173714  104  1  2   47   95    62 0.938   2.69
 5.01 Init - 176618 176597   22  2  1   71  116    12 0.426   2.39
 5.00 Prom - 198977 198938   40                              -6.26

 6.00 Prom + 200100 200139   40                              -4.66
 6.01 Init + 206745 206747    3  2  0  108   81     0 0.741   1.30
 6.02 Intr + 212579 212737  159  1  0   49   41   134 0.199   4.98
 6.03 Intr + 213151 213316  166  0  1   87  113    69 0.317   8.83
 6.04 Intr + 231020 231139  120  0  0   50  115    55 0.355   4.87
 6.05 Intr + 235952 236029   78  0  0   76   72    90 0.817   5.72
 6.06 Intr + 238841 238918   78  0  0   49   97    62 0.754   2.72
 6.07 Intr + 239198 239360  163  0  1   59   61    94 0.285   2.83
 6.08 Intr + 240166 240268  103  1  1   54   68    89 0.320   3.68

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  65605  65453  153  1  0  124   32    38 0.806  -0.28
S.002 Intr -  66217  66110  108  1  0   56   68   117 0.880   6.98


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593f:134435858_134679314|GENSCAN_predicted_peptide_1|161_aa
MPSQHEAFHLLLPIPYGFLWLWKPKPCSHLKHALSLSARFHLGNLSDSDVQAAGRRTVNR
GACDELRGAIAKSSRLLRVSQRASQLSQHCPSLTPSFHPMSWPIPTGHSTPGKTEQATCQ
APSAQSAIAMALLGVYRSPQLPYQDRDSGQVLCPDDSNLLD

>gi568815593f:134435858_134679314|GENSCAN_predicted_CDS_1|486_bp
atgcccagccagcatgaagcctttcatttgctgctacccattccgtatggctttctctgg
ctctggaaaccaaaaccctgcagccacctaaagcatgccctgagtctctcagccaggttt
catctgggaaatctgagtgacagtgacgtgcaggcagctggaagacgcacagtaaaccga
ggagcctgtgatgagctcagaggagccattgccaagagcagcagactcctgagggtgagt
caacgggcaagccagctgagccagcactgtccctcccttacgccatccttccaccccatg
tcctggcccatccccactggccattccactccggggaaaacagagcaagccacttgccag
gccccttctgcccagagtgccattgccatggctctcctgggggtgtaccgctccccgcaa
cttccgtatcaagatagggactctggccaggtgctgtgcccagatgattccaacctgttg
gactaa

>gi568815593f:134435858_134679314|GENSCAN_predicted_peptide_2|150_aa
MRGSFLRSFHKVDAGSIMLHVQPAECSHQGATTTAELPFQGLSTLDAAGNYRTSPSLHLR
SVEQASPPCQSLEAESWPPLTNQFQLANSLLSITGPLSGRHLNSDPPIYRVKWHSNAFQE
DIAEGPNCEDIAHQSWSLHTKLGFSLFWTS

>gi568815593f:134435858_134679314|GENSCAN_predicted_CDS_2|453_bp
atgagaggaagcttcctgaggtccttccataaagtagatgctggcagcatcatgcttcat
gtacagcctgcagaatgctcccatcagggcgccaccactacagcagaactgccttttcaa
ggactctccacgttagatgcagcgggcaattatcggacctcaccttccttgcacctccgt
agcgtggaacaggcttctcctccctgccagtctcttgaagctgagtcatggccgcccctt
accaatcagtttcagctggccaactccctgctgtccataactggcccgctttcaggtaga
catttgaattctgaccccccaatctatagggtgaagtggcacagtaacgcattccaggag
gacatcgctgagggccccaattgtgaggacattgcccatcaatcttggagcctccacacc
aagctgggattctctctcttctggacttcatag

>gi568815593f:134435858_134679314|GENSCAN_predicted_peptide_3|1069_aa
MALAAPQFGMSIFRNSGNKCLLLWSLTAFEPHHLLGLPLCVSPVLDTYSADLSCDIYIRI
KMLQTAQQHQVGLAPTERKEALRGSQSPQKSASGQRPGSLDRELLMLIKISKCLRVPSGP
SSVLGTESTGPVPGELVLCQQDAGATQEGVCYGRELMICRCDSFPRLMEPWGVKGTPEVF
RTDLITAMKIPDSYQLSPDDYYILADPWRQEWEKGVQVPAGAEAIPEPVVRVKTPSPPID
PSQLTPSSQLTSAVLATAEALSHSFWQPCPRPQDASQSSESLQGGQMVEEEVKEGVEGGG
PCVVSKHTCPSAPELDWILPPLEGPPAQASPSSTMLGEGSQPDWPGGSRYDLDEIDAYWL
ELINSELKEMERPELDELTLERVLEELETLCHQNMARAIETQEGLGIEYDEDVVCDVCRS
PEGEDGNEMVFCDKCNVCVHQACYGILKVPTGSWLCRTCALGVQPKCLLCPKRGGALKPT
RSGTKWVHVSCALWIPEVSIGCPEKMEPITKISHIPASRWALSCSLCKECTGTCIQCSMP
SCVTAFHVTCAFDHGLEMRTILADNDEVKFKSFCQEHSDGGPRNEPTSEPTEPSQAGEDL
EKVTLRKQRLQQLEEDFYELVEPAEVAERLDLAEALVDFIYQYWKLKRKANANQPLLTPK
TDEVDNLAQQEQDVLYRRLKLFTHLRQDLERGSPNPLVPLPHPSPVTTSSCSQVRNLCYM
VTRRERTKHAICKLQEQIFHLQMKLIEQDLCRERSGRRAKGKKSDSKRKGCEGSKGSTEK
KEKVKAGPDSVLGQLAGLSTSFPIDGTFFNSWLAQSVQITAENMAMSEWPLNNGHREDPA
PGLLSEELLQDEETLLSFMRDPSLRPGDPARKARGRTRLPAKKKPPPPPPQDGPGSRTTP
DKAPKKTWGQDAGSGKGGQGPPTRKPPRRTSSHLPSSPAAGDCPILATPESPPPLAPETP
DEAASVAADSDVQVPGPAASPKPLGRLRPPRESKVTRRLPGARPDAGMGPPSAVAERPKV
SLHFDTETDGYFSDGEMSDSDVEAEDGGVQRGPREAGAEEVVRMGVLAS

>gi568815593f:134435858_134679314|GENSCAN_predicted_CDS_3|3210_bp
atggctttagcagcacctcaatttgggatgtctattttccggaacagcgggaataagtgt
ctgctgctctggtctctcactgccttcgagccccatcacctgctcgggctccccctctgt
gtgtccccagttctggacacttattcagcagacctgtcatgcgacatctacatccgcatc
aagatgctccaaactgcccagcagcaccaagtcgggctggccccgacagaacgaaaagaa
gccctccgaggaagtcagagtccccagaagtcagccagtgggcagaggcctgggtctctg
gaccgggagctgctgatgctgatcaaaatcagcaagtgcttaagagtacctagtgggcct
agctcagtgctggggacagaaagcacaggccctgtccctggggagcttgtcctttgtcag
caggatgcaggtgctacacaggaaggtgtctgttatgggagggagttgatgatctgtaga
tgtgactccttcccgagactcatggagccctggggggtgaagggaaccccagaggttttc
cggacagacttgatcacagccatgaagatcccggactcataccagctcagcccggatgac
tactacatcctggcagacccatggcgacaggaatgggagaaaggtgtgcaggtgcctgcc
ggggcagaggccatcccagagcccgtggtgagggtaaagaccccctcccctcccatagat
cccagccagctgacgccctcctcccagctgacctccgccgtcctggctacagctgaggcg
ctgagtcacagcttctggcagccttgcccccgaccccaggatgcctctcaatcatctgag
tctctgcagggtgggcagatggtggaggaggaagtgaaggagggggtggaaggaggtggg
ccctgtgtggtgtcaaagcacacttgtccatcagctcctgagctggactggatcctccca
ccactggaaggcccccctgcccaggcatccccgagcagcaccatgcttggtgagggctcc
cagcctgattggccagggggcagccgctatgacttggacgagattgatgcctactggctg
gagctcatcaactcggagcttaaggagatggagaggccggagctggacgagctgacatta
gagcgtgtgctggaggagctggagaccctgtgccaccagaatatggccagggccattgag
acgcaggaggggctgggcatcgagtacgacgaggatgttgtctgcgacgtgtgtcgctct
cctgagggcgaggatggcaacgagatggtcttctgtgacaagtgcaacgtctgtgtgcat
caggcatgctacgggatcctcaaggtgcccacgggcagctggctgtgccggacgtgtgcc
ctgggtgtccagccaaagtgcctgctctgccccaagcgaggaggagccttgaagcccact
agaagtgggaccaagtgggtgcatgtcagctgtgccctatggattcctgaggtcagcatc
ggctgcccagagaagatggagcccatcaccaagatctcgcatatcccagccagccgctgg
gctctgtcctgcagcctctgcaaggaatgcacaggcacctgcatccagtgttccatgcct
tcctgcgtcacagcgttccatgtcacatgcgcctttgaccacggcctggaaatgcggact
atattagcagacaacgatgaggtcaagttcaagtcattctgccaggagcacagtgacggg
ggcccacgtaatgagcccacatctgagcccacggaacccagccaggctggcgaggacctg
gaaaaggtgaccctgcgcaagcagcggctgcagcagctagaggaggacttctacgagctg
gtggagccggctgaggtggctgagcggctggacctggctgaggcactggtcgacttcatc
taccagtactggaagctgaagaggaaagccaatgccaaccagccgctgctgacccccaag
accgacgaggtggacaacctggcccagcaggagcaggacgtcctctaccgccgcctgaag
ctcttcacccatctgcggcaggacctagagaggggctcccccaacccattagtgcccttg
cctcacccaagcccagtcaccacctccagctgctcccaggttagaaatctgtgctacatg
gtgacaaggcgcgagagaacgaaacacgccatctgcaaactccaggagcagatattccac
ctgcagatgaaacttattgaacaggatctgtgtcgagagcggtctgggaggagagcaaag
ggcaagaagagtgactcgaagaggaagggctgcgagggctccaagggcagcactgagaag
aaagagaaagtgaaggcggggcctgactcagtcctggggcagctggcaggcctgtccacc
tcattccccatcgatggcaccttcttcaacagctggctggcacagtcggtgcagatcaca
gcagagaacatggccatgagcgagtggccactgaacaatgggcaccgcgaggaccctgct
ccagggctgctgtcagaggaactgctgcaggacgaggagacactgctcagcttcatgcgg
gacccctcgctgcgacctggtgaccctgctaggaaggcccgaggccgcacccgcctgcct
gccaagaagaaaccaccaccaccaccaccgcaggacgggcctggttcacggacgactcca
gacaaagcccccaagaagacctggggccaggatgcaggcagtggcaaggggggtcaaggg
ccacctaccaggaagccaccacgtcggacatcttctcacttgccgtccagccctgcagcc
ggggactgtcccatcctagccacccctgaaagccccccgccactggcccctgagaccccg
gacgaggcagcctcagtagctgctgactcagatgtccaagtgcctggccctgcagcaagc
cctaagcctttgggccggctccggccaccccgcgagagcaaggtaacccggagattgccg
ggtgccaggcctgatgctgggatgggaccaccttcagctgtggctgagaggcccaaggtc
agcctgcattttgacactgagactgatggctacttctctgatggggagatgagcgactca
gatgtagaggccgaggacggtggggtgcagcggggtccccgggaggcaggggcagaggag
gtggtccgcatgggcgtactggcctcctaa

>gi568815593f:134435858_134679314|GENSCAN_predicted_peptide_4|110_aa
MGLGTMQQRQHRIMQGTAGTGHTQQPASLTDIWVLQDTGSATVQSKATANEEGPESRGQQ
CEQRLLEEHQPARGKGPDSLHPLPNSPPTPATREAQPLPQDGVKGQGAKC

>gi568815593f:134435858_134679314|GENSCAN_predicted_CDS_4|333_bp
atggggctgggaactatgcagcagcggcaacacagaatcatgcagggcacagcgggcact
ggccacacccagcagccagccagcctaacagacatctgggttctgcaggacacaggctca
gcaacagtccagtccaaagcaacagccaatgaagaagggccagaatccagaggccaacaa
tgtgagcagaggctcttggaagaacaccagccagcccgaggcaaggggccagactcgttg
caccctctccctaattctccacccacccctgccaccagggaggcccagcccctgccccag
gatggtgtgaaggggcaaggggccaagtgctga

>gi568815593f:134435858_134679314|GENSCAN_predicted_peptide_5|124_aa
MGFRHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN
KIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSVLKRQGYGEGFRWMA
QYID

>gi568815593f:134435858_134679314|GENSCAN_predicted_CDS_5|375_bp
atgggatttcgccacgttcaagctcgaagagtgtggaaaaactaccttcctgctatcaat
ggcattgtatttctggtggattgtgcagaccacgaaaggctgttagagtcaaaagaagaa
cttgattcactaatgacagatgaaaccattgctaatgtgcctatactgattcttgggaat
aagatcgacagacctgaagccatcagtgaagagaggttgcgagagatgtttggtttatat
ggtcagacaacaggaaaggggagtatatctctgaaagaactgaatgcccgacccttagaa
gttttcatgtgtagtgtgctcaaaagacaaggttacggagaaggcttccgctggatggca
cagtacattgattaa

>gi568815593f:134435858_134679314|GENSCAN_predicted_peptide_6|290_aa
MVIFTKPEERNCQSHPTKAATESQIAPRSWLCERGHVHNGGNFRSGDTRHFRPAQWSFSS
LLVRCCRPRPAPSNPVIMSQPGIPASGGAPASLQAQNGAALASGSPYTNGAPHGPPPAGG
PPPVRALTPLTSSYRDVPQPLFNSAVNQEGITSNTNNGSMVVHSSYDEIEGGGLLEHNTT
WCNWSTTLFLELPKWATSLYSGANHLTTSMSGLSLQPEGLRVVNLLQERNMLPSTPLKPP
VPNLHEDIQKLNCNPELFRCTLTSIPQTQALLNKAKLPLGLLLHPFKDLV

>gi568815593f:134435858_134679314|GENSCAN_predicted_CDS_6|870_bp
atggtaatcttcacaaaacccgaggagaggaactgtcagtcccaccccacgaaagcggct
actgaatctcagattgccccacgatcctggctctgcgagcgaggtcacgttcacaacggc
gggaatttccgtagcggtgacacacggcacttccggccggcccagtggtctttcagctct
cttcttgtgcgctgttgtcgaccccgaccagccccttccaacccagtcatcatgtcccag
ccgggaataccggcctccggcggcgccccagccagcctccaggcccagaacggagccgcc
ttggcctcggggtctccctacaccaacggagctcctcatgggccccctccagctggaggc
ccacccccagtgagggccctcacgcccctgacatcatcatatagagatgtaccccagccc
ttatttaattcagctgtcaaccaagaaggtattacatcaaataccaataacggatctatg
gtggtccacagtagttacgacgagattgaaggaggtggcttattggaacacaacaccacc
tggtgcaactggagtaccaccctcttccttgaattacccaagtgggccacaagcctttac
tcaggtgctaatcatttaaccacaagcatgagtggattaagtctacaaccagagggtcta
agagttgtcaatcttcttcaagaaagaaacatgcttccgtcaacacctttgaagcctcca
gttccaaatttgcatgaagacatccagaaactcaactgtaacccagagttatttcgatgc
acgctgactagcattcctcagacgcaggccttattgaataaagccaaacttcctttgggg
ctgctgcttcatcctttcaaagacttagtg