GENSCAN 1.0	Date run:  3-Nov-116	Time: 00:51:23

Sequence gi568815597r:40526520_40741925 : 215406 bp : 44.41% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  14067  14193  127  2  1   60   82    76 0.562   4.45
 1.02 Intr +  15096  15191   96  1  0   95  109    34 0.602   6.18
 1.03 Term +  20043  20941  899  1  2   62   34   473 0.469  31.84
 1.04 PlyA +  21097  21102    6                               1.05

 2.00 Prom +  21129  21168   40                              -4.76
 2.01 Init +  22906  23012  107  0  2   77   78    87 0.356   6.29
 2.02 Intr +  24679  24706   28  1  1   63   73    24 0.159  -3.48
 2.03 Intr +  31076  31300  225  1  0   49   39   174 0.235   6.78
 2.04 Intr +  36930  37140  211  2  1   56   68   116 0.400   4.89
 2.05 Term +  38864  38958   95  0  2  105   47    18 0.303  -2.61
 2.06 PlyA +  39295  39300    6                               1.05

 3.02 PlyA -  40564  40559    6                               1.05
 3.01 Sngl -  67482  67204  279  0  0   33   42   235 0.295   8.83
 3.00 Prom -  72581  72542   40                              -0.46

 4.11 PlyA -  72698  72693    6                               1.05
 4.10 Term -  79393  79294  100  0  1   55   36    74 0.425  -3.50
 4.09 Intr -  83915  83792  124  0  1  101   75    87 0.841   8.34
 4.08 Intr -  93900  93843   58  0  1  116  116    60 0.931  10.06
 4.07 Intr -  99189  99039  151  2  1   69   99    22 0.841   1.56
 4.06 Intr - 100210 100107  104  1  2  125   47   269 0.957  25.47
 4.05 Intr - 102430 102291  140  2  2  109   94   236 0.978  26.48
 4.04 Intr - 102853 102752  102  2  0  130   94   127 0.758  17.65
 4.03 Intr - 106662 106550  113  2  2  142   92    43 0.997  10.12
 4.02 Intr - 109538 109397  142  0  1    5   56   286 0.995  16.51
 4.01 Init - 115406 115190  217  2  1   72   81   120 0.522   8.56
 4.00 Prom - 125239 125200   40                              -3.76

 5.07 PlyA - 125255 125250    6                               1.05
 5.06 Term - 126131 126083   49  1  1  100   47    64 0.061   0.28
 5.05 Intr - 133735 133615  121  2  1  111   19    94 0.046   4.35
 5.04 Intr - 136616 136454  163  2  1   52  101    21 0.014  -0.65
 5.03 Intr - 142940 142908   33  2  0  101   92    12 0.011   1.32
 5.02 Intr - 153473 153406   68  0  2   75  103    38 0.098   2.62
 5.01 Init - 165490 165442   49  1  1  101   53   110 0.186   7.92
 5.00 Prom - 179414 179375   40                              -4.36

 6.00 Prom + 180672 180711   40                              -3.46
 6.01 Init + 204036 204087   52  2  1   40  115    40 0.535   3.22
 6.02 Term + 212317 212510  194  2  2   77   42   173 0.885   9.18
 6.03 PlyA + 213876 213881    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 131601 131719  119  2  2   84  100    79 0.845   8.37


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:40526520_40741925|GENSCAN_predicted_peptide_1|373_aa
ESVTFQDVAVDFTAEEWQLLDCAERTLYWDVMLENYRNLISVGCPITKTKVILKVEQGQE
PWMVEGANPHESSPESDYPLVDEPGKHRESKDNFLKSVLLTFNKILTMERIHHYNMSTSL
NPMRKKSYKSFEKCLPPNLDLLKYNRSYTVENAYECSECGKAFKKKFHFIRHEKNHTRKK
PFECNDCGKAYSRKAHLATHQKIHNGERPFVCNDCGKAFMHKAQLVVHQRLHTGEKPYEC
SQCGKTFTWNSSFNQHVKSHTLEKSFECKECGKTFRYSSSLYKHSRFHTGEKPYQCIICG
KAFGNTSVLVTHQRIHTGEKPYSCIECGKAFIKKSHLLRHQITHTGEKPYECNRCGKAFS
QKSNLIVHQKIHT

>gi568815597r:40526520_40741925|GENSCAN_predicted_CDS_1|1122_bp
gaatcagtgacattccaggatgtggctgtggatttcactgcagaggagtggcagctgctt
gattgtgctgagagaaccctgtattgggatgtgatgttggagaactatagaaacctcatc
tcagtgggatgtccaattaccaaaacaaaagtgatcctcaaggtagagcaaggacaagag
ccatggatggtggagggagcgaatccacacgagagctctccagaatctgactacccactt
gttgatgaaccagggaagcatcgggaaagcaaagacaattttttgaagtcagttttgctc
acattcaataaaattctgactatggagagaatccaccattataatatgagcacaagtctt
aatccaatgagaaaaaaatcatataaatcgtttgagaagtgtttgccacctaatttagac
ttacttaaatataatagaagttatactgtagaaaacgcttatgaatgcagtgaatgcggg
aaagccttcaaaaagaagtttcatttcattagacatgaaaaaaatcatacaaggaaaaaa
ccttttgaatgcaatgactgtggaaaagcctatagcaggaaggcacaccttgcaactcat
cagaaaattcataatggagagagaccctttgtgtgcaatgattgtgggaaggcgtttatg
cataaagcccaactcgtggtccaccagagacttcacactggagagaagccttatgagtgc
agtcaatgtgggaaaacattcacttggaactcctcatttaatcaacacgtgaaatctcat
acacttgagaagtcatttgaatgtaaggaatgtgggaaaaccttcaggtatagttcatcc
ctttataaacattccagatttcatacaggagagaaaccctaccagtgtatcatatgtggc
aaagcttttggcaacacatccgtgcttgttacacaccaaagaattcatacaggagagaaa
ccttacagttgtattgaatgtggcaaagccttcatcaagaagtcccatctcctcagacat
cagataactcatacaggagagaagccctatgaatgtaacagatgtgggaaagcattttcc
cagaagtcaaatcttattgtacatcagaaaattcatacataa

>gi568815597r:40526520_40741925|GENSCAN_predicted_peptide_2|221_aa
MPGIFRMNSIGIINEDENLLEKSKFFCLATLEYDILMGMTIIIYRASRVKLQTFTVSVTA
LKAARPELFIPPVGVGVSLTSGEKQQTFVVSVTAHKGTVEPKSVQQQDLLQTAKEQSIHK
CCQVDPVYHMHCCRCLLTEEEFLFIGVLGTCYIQGCGHGLHQRGMGATRLCTKGLYREVM
LEIYGNLVIVGTWMKLETIILSRLSQGQKTKHRMFSLIGGN

>gi568815597r:40526520_40741925|GENSCAN_predicted_CDS_2|666_bp
atgcctggaattttccgtatgaacagcataggcatcattaatgaagatgaaaacttgtta
gaaaagagcaagtttttctgcttagcaactttggaatatgacattttaatgggaatgaca
attatcatctatagggcttcaagagtgaagctgcagaccttcacagtgagtgtgacagct
cttaaggcagcgcgtccggagttgttcattcctcctgttggagtcggcgtctcgctaacc
tcaggagagaagcagcagaccttcgtggtgagtgttacagctcataaaggcactgtggag
ccaaagagtgtgcagcagcaagatttattgcaaacagcaaaagaacaaagcatccacaag
tgttgccaggtggaccctgtgtaccacatgcattgctgtagatgcttgctcaccgaagag
gaattcctgttcattggtgttttaggaacctgttacattcaaggatgtggccatggactt
caccaaagaggaatgggggcaactagactatgcacaaagggcctttacagagaagtgatg
ctggagatctatggcaacctggtcatagtggggacatggatgaagctggaaaccatcatt
ctcagcagactatcgcaaggacaaaaaaccaaacaccgcatgttctcactcataggtggg
aattga

>gi568815597r:40526520_40741925|GENSCAN_predicted_peptide_3|92_aa
MRLKRMQTQESAKPAKTLQKPDKVVTAGYKPVANHQCNIAYEKKKKEEGKRVQADKDHVL
SLLFAAFEKHQCYNIKDVVGITMQPVCASRKS

>gi568815597r:40526520_40741925|GENSCAN_predicted_CDS_3|279_bp
atgagactgaagagaatgcaaacacaggaatctgccaaacctgccaaaaccctgcagaaa
ccggacaaggttgtcacagctggttataaacctgttgctaatcatcagtgtaatattgca
tatgagaagaaaaagaaagaagagggaaagagggtgcaggctgataaagaccacgtttta
tccttgctatttgctgccttcgagaaacaccagtgttacaacataaaggatgtggttggc
atcacaatgcaacctgtgtgtgcctcaaggaaatcttga

>gi568815597r:40526520_40741925|GENSCAN_predicted_peptide_4|416_aa
MFNGEPGPASSGASRNVVRSSSISGEICGSQQAGGGAGTTTAKKRRSSLGAKMVAIVGLT
QWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTNSNSSDGT
FIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEVEVIEARG
LTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQGKVLQVI
VWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGCLPTPPCRRSSASGPGQAATEGMLSAKA
NSPPEALRVALTPSGLIPGGHDSALKAFYFHRLHKGYPTTEEGGSVQVNQVELECMSGLE
WLKLAGHSGTGRSKFHAGPMAASRAEEKGYSITKPLTLDHSLYFISVSYTEYYYAF

>gi568815597r:40526520_40741925|GENSCAN_predicted_CDS_4|1251_bp
atgtttaacggggagccaggtcctgcctcatctggggcctccaggaatgtggtgcggagc
tccagcattagcggtgaaatctgcggatcccagcaagccgggggcggggctgggaccacc
accgccaagaagcggcggagcagcctgggtgccaagatggtggccatcgtgggcctgact
cagtggagcaagagcacactccagcttccgcagcctgaaggggccaccaagaagctgcgc
agcaacatccgccggagcacggagacaggcatcgcggtggagatgcggagccgggtcaca
cgccagggcagccgggagtccaccgatgggagcaccaacagcaacagctccgacggcacg
ttcatcttccccactacccggctaggggctgaaagccagttcagcgatttcctggatggg
ctgggaccagctcagattgtggggcgacagacactggcaacaccacccatgggagatgtg
cacattgccatcatggaccggagtggccagctggaggtggaagtgattgaagctcggggc
ctgacccccaaaccaggctccaaatccctcccagccacctatatcaaggtttacctgctg
gagaatggggcctgcttggccaagaagaagacaaagatgaccaagaagacctgtgatccc
ctgtaccagcaggctctgctctttgacgagggaccccagggcaaggtgctgcaggtgatc
gtctggggagactatggccgcatggaccacaagtgcttcatgggcatggcccagatcatg
ctggacgagctggacctcagcgccgcggtcaccggctgcctccccactccaccgtgccga
aggagctctgccagtgggcctgggcaggcagccacagagggcatgttatctgctaaagca
aacagtcctcctgaggccctgagggtggccctgaccccctcagggctcattcctggtggg
catgactcggccctcaaagccttctacttccatagactccacaagggatatccaacgaca
gaggaaggagggagcgtgcaagtgaaccaggtggaactggagtgcatgagtggactagag
tggctgaaactggccggccactctggcaccggcaggagcaaattccatgcaggccccatg
gcagcttccagggcagaagagaaaggctatagcattactaagcctctcaccttggaccac
agcctctactttatcagtgtatcctatactgagtattactatgctttttag

>gi568815597r:40526520_40741925|GENSCAN_predicted_peptide_5|160_aa
MAAGRTDRATAAAARGNNRYPEEYKPNQLCWSSKQWLQHNPQHLQKAWIKGRSDFYTVLT
DSGAVSYTGISLTSQKSFTSWGVCELKAEVRNKCSLVGGELAGNGPRFISGIAVLPPGQA
RKLKVLLDTPLFPSHTPITSPQQALCTYLLSNCAAVFASL

>gi568815597r:40526520_40741925|GENSCAN_predicted_CDS_5|483_bp
atggcggcgggcaggacggaccgagctacagcagcggccgcgcgaggaaataatagatac
ccagaggagtataagcccaatcaactgtgctggagctctaagcagtggctacagcataat
ccccagcacctgcaaaaggcctggataaaggggaggagtgacttctacactgtcctcact
gacagtggggctgtctcctacactggtatatcactgacctcacagaagagctttaccagc
tggggtgtgtgtgaactgaaggcggaggttagaaacaagtgctctctggttggaggtgag
cttgctgggaatggtccccggttcatctctggcatcgccgtcctcccacctggtcaagct
agaaagctgaaagttctcctggatacgcccctcttcccgtcccacacccctataaccagt
cctcagcaagccctttgtacctacctcctctccaactgcgctgctgtgttcgccagcctc
tga

>gi568815597r:40526520_40741925|GENSCAN_predicted_peptide_6|81_aa
MTEEDMIKMQVTKVSEEVVEMSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVVRKNE
KLLLETFKEYKELWEINQNSD

>gi568815597r:40526520_40741925|GENSCAN_predicted_CDS_6|246_bp
atgacagaggaagatatgatcaaaatgcaagtcacaaaagtgagtgaagaagttgtcgag
atgtccacagaaggaggatttggtggtactagcagcagtgatgcccagcaaagcctacag
tcgttctggcctcgggtcatggaagaaatccggaatttaacagtggtgaggaagaatgag
aaacttttattagaaacttttaaagagtataaagagctctgggaaattaaccaaaactca
gactaa