Result of FASTA (ccds) for pF1KSDA0210
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0210, 795 aa
  1>>>pF1KSDA0210 795 - 795 aa - 795 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5111+/-0.000904; mu= 11.3464+/- 0.055
 mean_var=138.4984+/-27.903, 0's: 0 Z-trim(110.0): 24  B-trim: 301 in 1/52
 Lambda= 0.108981
 statistics sampled from 11280 (11296) to 11280 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.347), width:  16
 Scan time:  4.040

The best scores are:                                      opt bits E(32554)
CCDS33714.1 TBC1D5 gene_id:9779|Hs108|chr3         ( 795) 5283 842.6       0
CCDS46770.1 TBC1D5 gene_id:9779|Hs108|chr3         ( 817) 3576 574.2  3e-163


>>CCDS33714.1 TBC1D5 gene_id:9779|Hs108|chr3              (795 aa)
 initn: 5283 init1: 5283 opt: 5283  Z-score: 4495.1  bits: 842.6 E(32554):    0
Smith-Waterman score: 5283; 100.0% identity (100.0% similar) in 795 aa overlap (1-795:1-795)

               10        20        30        40        50        60
pF1KSD MYHSLSETRHPLQPEEQEVGIDPLSSYSNKSGGDSNKNGRRTSSTLDSEGTFNSYRKEWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MYHSLSETRHPLQPEEQEVGIDPLSSYSNKSGGDSNKNGRRTSSTLDSEGTFNSYRKEWE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ELFVNNNYLATIRQKGINGQLRSSRFRSICWKLFLCVLPQDKSQWISRIEELRAWYSNIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ELFVNNNYLATIRQKGINGQLRSSRFRSICWKLFLCVLPQDKSQWISRIEELRAWYSNIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EIHITNPRKVVGQQDLMINNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEMQFFQQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EIHITNPRKVVGQQDLMINNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEMQFFQQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NVRKILTDVLFCYARENEQLLYKQGMHELLAPIVFVLHCDHQAFLHASESAQPSEEMKTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NVRKILTDVLFCYARENEQLLYKQGMHELLAPIVFVLHCDHQAFLHASESAQPSEEMKTV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LNPEYLEHDAYAVFSQLMETAEPWFSTFEHDGQKGKETLMTPIPFARPQDLGPTIAIVTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LNPEYLEHDAYAVFSQLMETAEPWFSTFEHDGQKGKETLMTPIPFARPQDLGPTIAIVTK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VNQIQDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALFADGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VNQIQDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALFADGL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SLGLVDYIFVAMLLYIRDALISSNYQTCLGLLMHYPFIGDVHSLILKALFLRDPKRNPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SLGLVDYIFVAMLLYIRDALISSNYQTCLGLLMHYPFIGDVHSLILKALFLRDPKRNPRP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD VTYQFHPNLDYYKARGADLMNKSRTNAKGAPLNINKVSNSLINFGRKLISPAMAPGSAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VTYQFHPNLDYYKARGADLMNKSRTNAKGAPLNINKVSNSLINFGRKLISPAMAPGSAGG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD PVPGGNSSSSSSVVIPTRTSAEAPSHHLQQQQQQQRLMKSESMPVQLNKGLSSKNISSSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PVPGGNSSSSSSVVIPTRTSAEAPSHHLQQQQQQQRLMKSESMPVQLNKGLSSKNISSSP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD SVESLPGGREFTGSPPSSATKKDSFFSNISRSRSHSKTMGRKESEEELEAQISFLQGQLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SVESLPGGREFTGSPPSSATKKDSFFSNISRSRSHSKTMGRKESEEELEAQISFLQGQLN
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD DLDAMCKYCAKVMDTHLVNIQDVILQENLEKEDQILVSLAGLKQIKDILKGSLRFNQSQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DLDAMCKYCAKVMDTHLVNIQDVILQENLEKEDQILVSLAGLKQIKDILKGSLRFNQSQL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD EAEENEQITIADNHYCSSGQGQGRGQGQSVQMSGAIKQASSETPGCTDRGNSDDFILISK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EAEENEQITIADNHYCSSGQGQGRGQGQSVQMSGAIKQASSETPGCTDRGNSDDFILISK
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD DDDGSSARGSFSGQAQPLRTLRSTSGKSQAPVCSPLVFSDPLMGPASASSSNPSSSPDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DDDGSSARGSFSGQAQPLRTLRSTSGKSQAPVCSPLVFSDPLMGPASASSSNPSSSPDDD
              730       740       750       760       770       780

              790     
pF1KSD SSKDSGFTIVSPLDI
       :::::::::::::::
CCDS33 SSKDSGFTIVSPLDI
              790     

>>CCDS46770.1 TBC1D5 gene_id:9779|Hs108|chr3              (817 aa)
 initn: 3592 init1: 3564 opt: 3576  Z-score: 3044.4  bits: 574.2 E(32554): 3e-163
Smith-Waterman score: 5229; 97.3% identity (97.3% similar) in 817 aa overlap (1-795:1-817)

               10        20        30        40        50        60
pF1KSD MYHSLSETRHPLQPEEQEVGIDPLSSYSNKSGGDSNKNGRRTSSTLDSEGTFNSYRKEWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MYHSLSETRHPLQPEEQEVGIDPLSSYSNKSGGDSNKNGRRTSSTLDSEGTFNSYRKEWE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ELFVNNNYLATIRQKGINGQLRSSRFRSICWKLFLCVLPQDKSQWISRIEELRAWYSNIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ELFVNNNYLATIRQKGINGQLRSSRFRSICWKLFLCVLPQDKSQWISRIEELRAWYSNIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EIHITNPRKVVGQQDLMINNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEMQFFQQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EIHITNPRKVVGQQDLMINNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEMQFFQQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NVRKILTDVLFCYARENEQLLYKQGMHELLAPIVFVLHCDHQAFLHASESAQPSEEMKTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NVRKILTDVLFCYARENEQLLYKQGMHELLAPIVFVLHCDHQAFLHASESAQPSEEMKTV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LNPEYLEHDAYAVFSQLMETAEPWFSTFEHDGQKGKETLMTPIPFARPQDLGPTIAIVTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LNPEYLEHDAYAVFSQLMETAEPWFSTFEHDGQKGKETLMTPIPFARPQDLGPTIAIVTK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VNQIQDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALFADGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VNQIQDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALFADGL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SLGLVDYIFVAMLLYIRDALISSNYQTCLGLLMHYPFIGDVHSLILKALFLRDPKRNPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SLGLVDYIFVAMLLYIRDALISSNYQTCLGLLMHYPFIGDVHSLILKALFLRDPKRNPRP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD VTYQFHPNLDYYKARGADLMNKSRTNAKGAPLNINKVSNSLINFGRKLISPAMAPGSAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VTYQFHPNLDYYKARGADLMNKSRTNAKGAPLNINKVSNSLINFGRKLISPAMAPGSAGG
              430       440       450       460       470       480

              490       500       510       520       530          
pF1KSD PVPGGNSSSSSSVVIPTRTSAEAPSHHLQQQQQQQRLMKSESMPVQLNKG----------
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
CCDS46 PVPGGNSSSSSSVVIPTRTSAEAPSHHLQQQQQQQRLMKSESMPVQLNKGDVVTGSDAQV
              490       500       510       520       530       540

                          540       550       560       570        
pF1KSD ------------LSSKNISSSPSVESLPGGREFTGSPPSSATKKDSFFSNISRSRSHSKT
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SVPVQTLTDLQGLSSKNISSSPSVESLPGGREFTGSPPSSATKKDSFFSNISRSRSHSKT
              550       560       570       580       590       600

      580       590       600       610       620       630        
pF1KSD MGRKESEEELEAQISFLQGQLNDLDAMCKYCAKVMDTHLVNIQDVILQENLEKEDQILVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MGRKESEEELEAQISFLQGQLNDLDAMCKYCAKVMDTHLVNIQDVILQENLEKEDQILVS
              610       620       630       640       650       660

      640       650       660       670       680       690        
pF1KSD LAGLKQIKDILKGSLRFNQSQLEAEENEQITIADNHYCSSGQGQGRGQGQSVQMSGAIKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LAGLKQIKDILKGSLRFNQSQLEAEENEQITIADNHYCSSGQGQGRGQGQSVQMSGAIKQ
              670       680       690       700       710       720

      700       710       720       730       740       750        
pF1KSD ASSETPGCTDRGNSDDFILISKDDDGSSARGSFSGQAQPLRTLRSTSGKSQAPVCSPLVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ASSETPGCTDRGNSDDFILISKDDDGSSARGSFSGQAQPLRTLRSTSGKSQAPVCSPLVF
              730       740       750       760       770       780

      760       770       780       790     
pF1KSD SDPLMGPASASSSNPSSSPDDDSSKDSGFTIVSPLDI
       :::::::::::::::::::::::::::::::::::::
CCDS46 SDPLMGPASASSSNPSSSPDDDSSKDSGFTIVSPLDI
              790       800       810       




795 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:40:58 2016 done: Thu Nov  3 00:40:59 2016
 Total Scan time:  4.040 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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