Result of FASTA (ccds) for pF1KSDA0200
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0200, 1016 aa
  1>>>pF1KSDA0200 1016 - 1016 aa - 1016 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.9068+/-0.00103; mu= -6.7377+/- 0.062
 mean_var=388.0388+/-79.087, 0's: 0 Z-trim(115.2): 48  B-trim: 0 in 0/55
 Lambda= 0.065108
 statistics sampled from 15716 (15757) to 15716 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.484), width:  16
 Scan time:  4.960

The best scores are:                                      opt bits E(32554)
CCDS34315.1 MAML1 gene_id:9794|Hs108|chr5          (1016) 6904 663.2 7.4e-190
CCDS54805.1 MAML3 gene_id:55534|Hs108|chr4         (1138) 1021 110.7 1.8e-23


>>CCDS34315.1 MAML1 gene_id:9794|Hs108|chr5               (1016 aa)
 initn: 6904 init1: 6904 opt: 6904  Z-score: 3522.0  bits: 663.2 E(32554): 7.4e-190
Smith-Waterman score: 6904; 100.0% identity (100.0% similar) in 1016 aa overlap (1-1016:1-1016)

               10        20        30        40        50        60
pF1KSD MVLPTCPMAEFALPRHSAVMERLRRRIELCRRHHSTCEARYEAVSPERLELERQHTFALH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MVLPTCPMAEFALPRHSAVMERLRRRIELCRRHHSTCEARYEAVSPERLELERQHTFALH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QRCIQAKAKRAGKHRQPPAATAPAPAAPAPRLDAADGPEHGRPATHLHDTVKRNLDSATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QRCIQAKAKRAGKHRQPPAATAPAPAAPAPRLDAADGPEHGRPATHLHDTVKRNLDSATS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PQNGDQQNGYGDLFPGHKKTRREAPLGVAISSNGLPPASPLGQSDKPSGADALQSSGKHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PQNGDQQNGYGDLFPGHKKTRREAPLGVAISSNGLPPASPLGQSDKPSGADALQSSGKHS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LGLDSLNKKRLADSSLHLNGGSNPSESFPLSLNKELKQEPVEDLPCMITGTVGSISQSNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LGLDSLNKKRLADSSLHLNGGSNPSESFPLSLNKELKQEPVEDLPCMITGTVGSISQSNL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD MPDLNLNEQEWKELIEELNRSVPDEDMKDLFNEDFEEKKDPESSGSATQTPLAQDINIKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MPDLNLNEQEWKELIEELNRSVPDEDMKDLFNEDFEEKKDPESSGSATQTPLAQDINIKT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD EFSPAAFEQEQLGSPQVRAGSAGQTFLGPSSAPVSTDSPSLGGSQTLFHTSGQPRADNPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EFSPAAFEQEQLGSPQVRAGSAGQTFLGPSSAPVSTDSPSLGGSQTLFHTSGQPRADNPS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD PNLMPASAQAQNAQRALAGVVLPSQGPGGASELSSAHQLQQIAAKQKREQMLQNPQQATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PNLMPASAQAQNAQRALAGVVLPSQGPGGASELSSAHQLQQIAAKQKREQMLQNPQQATP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD APAPGQMSTWQQTGPSHSSLDVPYPMEKPASPSSYKQDFTNSKLLMMPSVNKSSPRPGGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 APAPGQMSTWQQTGPSHSSLDVPYPMEKPASPSSYKQDFTNSKLLMMPSVNKSSPRPGGP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD YLQPSHVNLLSHQPPSNLNQNSANNQGSVLDYGNTKPLSHYKADCGQGSPGSGQSKPALM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YLQPSHVNLLSHQPPSNLNQNSANNQGSVLDYGNTKPLSHYKADCGQGSPGSGQSKPALM
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD AYLPQQLSHISHEQNSLFLMKPKPGNMPFRSLVPPGQEQNPSSVPVQAQATSVGTQPPAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AYLPQQLSHISHEQNSLFLMKPKPGNMPFRSLVPPGQEQNPSSVPVQAQATSVGTQPPAV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD SVASSHNSSPYLSSQQQAAVMKQHQLLLDQQKQREQQQKHLQQQQFLQRQQHLLAEQEKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SVASSHNSSPYLSSQQQAAVMKQHQLLLDQQKQREQQQKHLQQQQFLQRQQHLLAEQEKQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD QFQRHLTRPPPQYQDPTQGSFPQQVGQFTGSSAAVPGMNTLGPSNSSCPRVFPQAGNLMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QFQRHLTRPPPQYQDPTQGSFPQQVGQFTGSSAAVPGMNTLGPSNSSCPRVFPQAGNLMP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD MGPGHASVSSLPTNSGQQDRGVAQFPGSQNMPQSSLYGMASGITQIVAQPPPQATNGHAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGPGHASVSSLPTNSGQQDRGVAQFPGSQNMPQSSLYGMASGITQIVAQPPPQATNGHAH
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD IPRQTNVGQNTSVSAAYGQNSLGSSGLSQQHNKGTLNPGLTKPPVPRVSPAMGGQNSSWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IPRQTNVGQNTSVSAAYGQNSLGSSGLSQQHNKGTLNPGLTKPPVPRVSPAMGGQNSSWQ
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD HQGMPNLSGQTPGNSNVSPFTAASSFHMQQQAHLKMSSPQFSQAVPNRPMAPMSSAAAVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HQGMPNLSGQTPGNSNVSPFTAASSFHMQQQAHLKMSSPQFSQAVPNRPMAPMSSAAAVG
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD SLLPPVSAQQRTSAPAPAPPPTAPQQGLPGLSPAGPELGAFSQSPASQMGGRAGLHCTQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SLLPPVSAQQRTSAPAPAPPPTAPQQGLPGLSPAGPELGAFSQSPASQMGGRAGLHCTQA
              910       920       930       940       950       960

              970       980       990      1000      1010      
pF1KSD YPVRTAGQELPFAYSGQPGGSGLSSVAGHTDLIDSLLKNRTSEEWMSDLDDLLGSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YPVRTAGQELPFAYSGQPGGSGLSSVAGHTDLIDSLLKNRTSEEWMSDLDDLLGSQ
              970       980       990      1000      1010      

>>CCDS54805.1 MAML3 gene_id:55534|Hs108|chr4              (1138 aa)
 initn: 882 init1: 366 opt: 1021  Z-score: 534.9  bits: 110.7 E(32554): 1.8e-23
Smith-Waterman score: 1797; 35.8% identity (63.4% similar) in 1075 aa overlap (12-981:66-1104)

                                  10        20        30        40 
pF1KSD                    MVLPTCPMAEFALPRHSAVMERLRRRIELCRRHHSTCEARY
                                     :.:.::.:.::::.::: ::::: .:: ::
CCDS54 TPNSTPAAPSSNHPAAGGCGGSGGPGGGSAAVPKHSTVVERLRQRIEGCRRHHVNCENRY
          40        50        60        70        80        90     

              50        60        70        80        90       100 
pF1KSD EAVSPERLELERQHTFALHQRCIQAKAKRAGKHRQPPAATAPAPAAPAPRLDAADGPEHG
       . .. :.:::::. : .:.:: .. .::..:      ..    :. :    .::.. ...
CCDS54 QQAQVEQLELERRDTVSLYQRTLEQRAKKSGAG----TGKQQHPSKPQQDAEAASAEQRN
         100       110       120           130       140       150 

             110       120       130         140        150        
pF1KSD RPATHLHDTVKRNLDSATSPQNGDQQNGY--GDLFPGHKKTRREAPLGV-AI----SSNG
       .    :..::::.:..: :: :::::::   :.. :  :. :..   :. ::    :.  
CCDS54 HTLIMLQETVKRKLEGARSPLNGDQQNGACDGNFSPTSKRIRKDISAGMEAINNLPSNMP
             160       170       180       190       200       210 

          160        170       180         190       200       210 
pF1KSD LPPASPLGQSD-KPSGADALQSSGKHSLGL-DSLNKK-RLADSSLHLNGGSNPSESFPLS
       :: :::: : : :::    ::.:: :. :: ..:.:. :: . .: .:: :.  .:: . 
CCDS54 LPSASPLHQLDLKPSL--PLQNSGTHTPGLLEDLSKNGRLPEIKLPVNGCSDLEDSFTIL
             220         230       240       250       260         

             220       230       240       250       260       270 
pF1KSD LNKELKQEPVEDLPCMITGTVGSISQSNLMPDLNLNEQEWKELIEELNRSVPDEDMKDLF
        .:.:::::..:  :. :. ..  .:..:. :.:::.:::.:::.::  .::..:..:::
CCDS54 QSKDLKQEPLDDPTCIDTSETSLSNQNKLFSDINLNDQEWQELIDELANTVPEDDIQDLF
     270       280       290       300       310       320         

             280       290        300       310       320       330
pF1KSD NEDFEEKKDPESSGSATQTPLAQD-INIKTEFSPAAFEQEQLGSPQVRAGSAGQTFLGPS
       ::::::::.:: :  ::.:::.:.  ..:.. : . : . ..::::.: .:.:  :   :
CCDS54 NEDFEEKKEPEFSQPATETPLSQESASVKSDPSHSPFAHVSMGSPQARPSSSGPPF---S
     330       340       350       360       370       380         

              340       350           360       370       380      
pF1KSD SAPVSTDSPSLGGSQTLFHTSGQPR---ADNP-SPNLMPASAQAQNAQRALAGVVL-PS-
       .. ..:. ::.... .  . ...:    ...: .::   : . .:   :   : .: :. 
CCDS54 TVSTATSLPSVASTPAAPNPASSPANCAVQSPQTPN--QAHTPGQAPPRPGNGYLLNPAA
        390       400       410       420         430       440    

                   390       400                          410      
pF1KSD -------QGPGG--ASELSSAHQLQQIAAKQKR-------------------EQMLQNPQ
              .:: .  .:..: :.::.:.::.:..                   .:. :. :
CCDS54 VTVAGSASGPVAVPSSDMSPAEQLKQMAAQQQQRAKLMQQKQQQQQQQQQQQQQQQQQQQ
          450       460       470       480       490       500    

        420       430       440       450       460       470      
pF1KSD QATPAPAPGQMSTWQQTGPSHSSLDVPYPMEKPASPSSYKQDFTNSKLLMMPSVNKSSPR
       :       .: :.:.  ::  :   . .  ::: ::  : : :.:.. .. : .:. .  
CCDS54 QQQQQQHSNQTSNWSPLGPPSSPYGAAFTAEKPNSPMMYPQAFNNQNPIVPPMANNLQKT
          510       520       530       540       550       560    

        480       490       500       510       520         530    
pF1KSD PGGPYLQPSHVNLLSHQPPSNLNQNSANNQGSVLDYGNTKPLSHYKADCGQ--GSPGSGQ
         . ::  .:.:....:: .::. :: :.: ..: :::::::.:..:: .:    : .. 
CCDS54 TMNNYLPQNHMNMINQQP-NNLGTNSLNKQHNILTYGNTKPLTHFNADLSQRMTPPVANP
          570       580        590       600       610       620   

          540                               550       560          
pF1KSD SKPALMAYLPQQL------------------------SHISHEQNSLFLMKPKP-GNMP-
       .:  :: :. ::                         .:.:..:. :.::: :   :.: 
CCDS54 NKNPLMPYIQQQQQQQQQQQQQQQQQQPPPPQLQAPRAHLSEDQKRLLLMKQKGVMNQPM
           630       640       650       660       670       680   

       570       580       590       600         610        620    
pF1KSD -FRSLVPPGQEQNPSSVPVQAQATSVGTQPPAVS--VASSHNSSP-YLSSQQQAAVMKQH
        . .:   ::::.: ..: .. .   .. ::. .  :...  ..: .:.:: :::.::  
CCDS54 AYAALPSHGQEQHPVGLP-RTTGPMQSSVPPGSGGMVSGASPAGPGFLGSQPQAAIMK--
           690       700        710       720       730       740  

          630       640           650       660       670       680
pF1KSD QLLLDQQKQREQQQKHL----QQQQFLQRQQHLLAEQEKQQFQRHLTRPPPQYQDPTQGS
       :.:.::. :  .:::.     :.::  :.::..::::. :  : ::   : :. .: .. 
CCDS54 QMLIDQRAQLIEQQKQQFLREQRQQQQQQQQQILAEQQLQ--QSHL---PRQHLQPQRNP
              750       760       770       780            790     

               690          700       710       720       730      
pF1KSD FP-QQVGQFTGSS---AAVPGMNTLGPSNSSCPRVFPQAGNLMPMGPGHASVSSLPTNSG
       .: :::.:: ::    ::: .. .:    .:  :.. : ...: .::.. . ... : ..
CCDS54 YPVQQVNQFQGSPQDIAAVRSQAALQSMRTS--RLMAQNAGMMGIGPSQ-NPGTMATAAA
         800       810       820         830       840        850  

        740       750       760       770           780       790  
pF1KSD QQDRGVAQFPGSQNMPQSSLYGMASGITQIVAQPPPQA----TNGHAHIPRQTNVGQNTS
       :.. :.: . ..    : ..:.:..:.::.. : : :.    :...:. :::   ::...
CCDS54 QSEMGLAPY-STTPTSQPGMYNMSTGMTQML-QHPNQSGMSITHNQAQGPRQPASGQGVG
            860        870       880        890       900       910

            800       810         820        830          840      
pF1KSD VSAAYGQNSLGSSGLSQQHN--KGTLNPGLTKPPVP-RVSPAMGG--QNS-SWQHQGMPN
       . ...::. : .:...:::   :: .. .: .: .: :..  ::   :.. :::.... .
CCDS54 MVSGFGQSMLVNSAITQQHPQMKGPVGQALPRPQAPPRLQSLMGTVQQGAQSWQQRSLQG
              920       930       940       950       960       970

        850       860       870         880          890       900 
pF1KSD LSGQTPGNSNVSPFTAASSFHMQQ-QAHL-KMSSPQ-FSQAV--PNRPMAPMSSAAAVG-
       . :.: :  ...::. ..:. .:  : .: :.  :: .::.:   :   .   . ::.: 
CCDS54 MPGRTSG--ELGPFNNGASYPLQAGQPRLTKQHFPQGLSQSVVDANTGTVRTLNPAAMGR
                980       990      1000      1010      1020        

              910       920       930       940          950       
pF1KSD SLLPPVSAQQRTSAPAPAPPPTAPQQGLPGLSPAGPELGAFSQSPASQM---GGRAGLHC
       ...: . .:: ::   :          . ::: . : . :::: ::.:.   :. :    
CCDS54 QMMPSLPGQQGTSQARPMV--------MSGLSQGVPGMPAFSQPPAQQQIPSGSFAPSSQ
     1030      1040              1050      1060      1070      1080

       960       970        980       990      1000      1010      
pF1KSD TQAYPVRTAGQELPFAYSGQ-PGGSGLSSVAGHTDLIDSLLKNRTSEEWMSDLDDLLGSQ
       .:::  :.: :.. . :::.  :::                                   
CCDS54 SQAYE-RNAPQDVSYNYSGDGAGGSFPGLPDGADLVDSIIKGGPGDEWMQELDELFGNP 
              1090      1100      1110      1120      1130         




1016 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:37:07 2016 done: Thu Nov  3 00:37:08 2016
 Total Scan time:  4.960 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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