GENSCAN 1.0	Date run:  2-Nov-116	Time: 23:52:01

Sequence gi568815588r:68315042_68571864 : 256823 bp : 43.08% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  16375  16604  230  0  2   80   16   195 0.273   9.13
 1.02 Intr +  16656  16768  113  0  2   20   76    97 0.196   1.72
 1.03 Intr +  17345  17410   66  0  0   98   22    95 0.161   2.78
 1.04 Intr +  17728  17832  105  2  0  122   42    32 0.129   2.19
 1.05 Intr +  22158  22292  135  1  0   87   77    72 0.878   6.54
 1.06 Intr +  24099  24185   87  1  0   48   83   128 0.926   8.24
 1.07 Intr +  24399  24514  116  1  2   89   82    12 0.935   0.87
 1.08 Intr +  26133  26268  136  2  1   27   85   113 0.943   5.04
 1.09 Intr +  26544  26639   96  1  0   98   71    67 0.979   5.98
 1.10 Intr +  26718  26810   93  1  0   82  115    42 0.974   6.24
 1.11 Term +  37269  37279   11  1  2   99   48    10 0.107  -3.54
 1.12 PlyA +  37990  37995    6                               1.05

 2.12 PlyA -  40949  40944    6                               1.05
 2.11 Term -  47444  47384   61  1  1  105   43    49 0.147  -0.62
 2.10 Intr -  61931  61812  120  1  0   10   68   139 0.235   3.71
 2.09 Intr -  64480  64383   98  1  2   51   87    72 0.955   2.21
 2.08 Intr -  66358  66191  168  1  0   17  110   167 0.994  11.94
 2.07 Intr -  68873  68757  117  2  0   71   96    66 0.982   6.36
 2.06 Intr -  69111  69010  102  0  0   76  107    26 0.926   3.67
 2.05 Intr -  79410  79287  124  2  1   67  108   114 0.930  11.89
 2.04 Intr -  86696  86579  118  0  1   75   72   134 0.820  10.02
 2.03 Intr -  89803  89630  174  2  0   94   64    56 0.042   3.71
 2.02 Intr -  92249  92145  105  0  0   28   82   130 0.005   6.59
 2.01 Init - 103575 103521   55  0  1   95   61     0 0.019  -0.62
 2.00 Prom - 105573 105534   40                              -1.46

 3.00 Prom + 108984 109023   40                              -0.76
 3.01 Init + 109519 109770  252  0  0   93   61   454 0.714  40.54
 3.02 Term + 109828 109956  129  0  0    2   36   154 0.694  -0.22
 3.03 PlyA + 110741 110746    6                               1.05

 4.08 PlyA - 113502 113497    6                               1.05
 4.07 Term - 117627 117592   36  0  0   81   55    62 0.513  -0.46
 4.06 Intr - 135206 134987  220  1  1  127   75   138 0.933  14.70
 4.05 Intr - 147582 147520   63  2  0   42  110    59 0.691   1.33
 4.04 Intr - 150771 150626  146  0  2   74  101    21 0.935   1.08
 4.03 Intr - 153265 153082  184  0  1   81   61    85 0.974   4.89
 4.02 Intr - 155122 154940  183  0  0   54   51   137 0.911   5.50
 4.01 Init - 156823 156750   74  1  2   83   42   115 0.747   6.94
 4.00 Prom - 165983 165944   40                              -2.96

 5.05 PlyA - 167580 167575    6                               1.05
 5.04 Term - 168547 168391  157  0  1   39   42   135 0.933   1.41
 5.03 Intr - 172171 172103   69  0  0  106   95    59 0.944   6.70
 5.02 Intr - 188654 188591   64  0  1   91  110    43 0.076   4.58
 5.01 Init - 212334 212205  130  0  1   68   90   225 0.993  19.04
 5.00 Prom - 219781 219742   40                              -2.66

 6.03 PlyA - 220334 220329    6                               1.05
 6.02 Term - 227542 227334  209  2  2   42   41   116 0.452  -0.20
 6.01 Init - 229792 229471  322  1  1   69   35   143 0.471   4.64

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  89759  89630  130  2  1   83   64    64 0.942   3.81
S.002 Sngl +  92147  92560  414  1  0   66   39   252 0.930  12.40


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:68315042_68571864|GENSCAN_predicted_peptide_1|395_aa
MNTPKKPGSRAAHWDEARWRAASNSGPGEGGGHPAREPKSAPVDAFIFAAQKHSYFSPHN
ANMVDQKIRPAFAGRTTICSRWGQITGELLQSATARFLLHTGRTAIAIAPRRQNGRAACR
WEDLLRWNSVDDAEARISAGLPGLTGLRVTSDADSQDERGWSWGRKANGDEAFKSNGIEM
DWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGYGGFDDYGGYNNYGYGNDGFDDR
MRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGA
DGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDG
MDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGYGSY

>gi568815588r:68315042_68571864|GENSCAN_predicted_CDS_1|1188_bp
atgaatacacccaagaaacccggatcccgcgcggcacattgggacgaagcgcgctggcgg
gcggccagcaactctgggccaggggaaggaggcggacacccagcccgagagccgaaatcg
gccccagtggacgctttcatcttcgcggcccagaaacactcctatttttcaccgcacaat
gcaaacatggtggaccagaaaatccgccccgcgtttgccggtcgaaccacaatttgttca
cggtgggggcagatcaccggagaacttctccagagcgctacggcacggttccttctacac
actggcagaactgccattgccatcgccccgaggcggcagaatgggagggcggcttgccga
tgggaggacttgctcaggtggaattcagtggacgacgccgaggcccgaatctcggcaggg
ctacctgggctgacgggactgcgagtgacttctgacgcagattcccaagatgagagaggc
tggagctgggggaggaaagccaatggcgacgaagcatttaaatcaaacggtattgagatg
gattgggttatgaaacataatggtccaaatgacgctagtgatgggacagtacgacttcgt
ggactaccatttggttgcagcaaagaggaaatagttcagttctttcaaggttatggaggt
tttgatgactatggtggctataataattacggctatgggaatgatggctttgatgacaga
atgagagatggaagaggtatgggaggacatggctatggtggagctggtgatgcaagttca
ggttttcatggtggtcatttcgtacatatgagagggttgccttttcgtgcaactgaaaat
gacattgctaatttcttctcaccactaaatccaatacgagttcatattgatattggagct
gatggcagagccacaggagaagcagatgtagagtttgtgacacatgaagatgcagtagct
gccatgtctaaagataaaaataacatgcaacatcgatatattgaactcttcttgaattct
actcctggaggcggctctggcatgggaggttctggaatgggaggctacggaagagatgga
atggataatcagggaggctatggatcagttggaagaatgggaatggggaacaattacagt
ggaggatatggtactcctgatggtttgggtggttatggaagctactga

>gi568815588r:68315042_68571864|GENSCAN_predicted_peptide_2|413_aa
MAFSGLGVRGGNLVDGSTAGLAADAVVAAERLEGAAGQAEGASARDRAAAAAMATKDPTA
VERANLLNMAKLSIKGLIESALSFGRTLDSDYPPLQQFFVVMEHCLKHGLKVRKSFLSYN
KTIWGPLELVEKLYPEAEEIGASVRDLPGLNEFYEYHALMMEEEGAVIVGLLVGLNVIDA
NLCVKGEDLDSQLAIAKNNIIKLQEENHQLRSENKLILMKTQQHLEVTKVDVETELQTYK
HSRQGLDEMYNEARRQLRDESQLRQDVENELAVQVSMKHEIELAMKLLEKDIHEKQDTLI
GLRQQLEEVKAINIEMYQKLQGSEDGLKEKNEIIARLEEKTNKITAAMRQLEQRLQQAEK
AQMEAEDEDEKYLQECLSKSDSLQKQISQKEKQLLCFGVAALRLIEHIARYLE

>gi568815588r:68315042_68571864|GENSCAN_predicted_CDS_2|1242_bp
atggcctttagcgggttgggggtgaggggcgggaacctggtggatgggtcaacagcgggc
ctggctgcagatgcggtggtggccgccgagcgcctggaaggagctgctggacaggccgag
ggagcctccgcccgagaccgcgcagccgccgccgccatggctacaaaagaccccacagct
gtagagagagcaaacttgttaaacatggctaaactgagtatcaaaggactcattgaatct
gctctgagctttggccgcactttggattctgactatccccccttgcagcaattctttgtt
gttatggaacattgcctgaaacacggtcttaaagtaagaaaatcatttttgagttacaac
aaaaccatctggggccctttggaactggtggagaagctgtaccccgaagcagaggaaata
ggagctagtgtccgggatctacctggtctgaatgagttttatgagtatcacgcactaatg
atggaagaagaaggagcagtaattgttgggctgctggttggcctgaatgtgatcgatgct
aatctgtgtgtgaagggagaggatttagactcacaattagcaatagcaaagaataacatc
attaaactccaggaagaaaatcatcaattacgaagtgaaaataaattgattttaatgaaa
acacagcagcacctagaggttaccaaagtagatgtggaaactgagcttcaaacatataag
cattctcgtcaggggctagatgaaatgtacaatgaagccagaaggcagcttcgagatgaa
tctcagttacgacaggatgtagagaatgagctagcagtacaagttagtatgaagcatgag
attgaacttgccatgaagttgctggagaaagatatccatgagaaacaagatactctgata
ggccttcgacaacaactagaggaagttaaagcaattaacatagagatgtatcaaaagttg
cagggttctgaagatggcttgaaagaaaaaaatgaaataattgcccgactagaagaaaaa
accaataaaattactgcagccatgaggcagctggaacaaagattgcagcaagcagagaag
gcgcaaatggaagctgaagatgaggatgagaaatatctacaagaatgtctcagtaaatct
gatagtctgcagaaacaaatctcccaaaaggagaaacagcttctgtgttttggggtagca
gctttgcgcctgattgaacatattgccagatatttggaataa

>gi568815588r:68315042_68571864|GENSCAN_predicted_peptide_3|126_aa
MKFNPFVNLDRSKNRKRHFHAPLHVHRKIMSSPLSKELRQKYNVRSTPIRKDDEVQVVQG
HYKGQQIGKVVQVYRKKDVIYTEQVVITRLNLNKDRKKIIEHKAKSRQVRKEKGKYKEEL
IEKMQE

>gi568815588r:68315042_68571864|GENSCAN_predicted_CDS_3|381_bp
atgaagttcaatcccttcgtgaacttggaccgcagcaaaaaccgcaaacgtcacttccat
gcccccttgcacgtgcaccggaagatcatgtcatccccgctctccaaggagctgcggcag
aagtacaatgtccgctccacacccatccgcaaggacgacgaggtccaggtagttcaagga
cactacaaaggtcagcaaattggcaaggtagtccaggtgtacagaaagaaagatgtcatc
tacactgagcaggtggttatcaccaggctaaatctcaacaaggatcggaaaaaaattatt
gaacacaaagccaagtctcgacaagtcagaaaagagaaaggcaaatataaggaggaactt
attgagaaaatgcaggaataa

>gi568815588r:68315042_68571864|GENSCAN_predicted_peptide_4|301_aa
MEQLNELELLMEKSFWEEAELPAELFQKKVVASFPRTVLSTGMDNRYLVLAVNTVQNKEG
NCEKRLVITASQSLENKELCILRNDWCSVPVEPGDIIHLEGDCTSDTWIIDKDFGYLILY
PDMLISGTSIASSIRCMRRAVLSETFRSSDPATRQMLIGTVLHEVFQKAINNSFAPEKLQ
ELAFQTIQEIRHLKEIVVIKIAELKHKEGTGIIILGGPSDNSKDNSTCNIEVVKPMDIEE
SIWSPRFGLKGKIDVTVGVKIHRGYKTKYKIMPLELKTGKESNSIEHRSQGLMLSLIGKC
D

>gi568815588r:68315042_68571864|GENSCAN_predicted_CDS_4|906_bp
atggagcagctgaacgaactggagctgctgatggagaagagtttttgggaggaggcggag
ctgccggcggagctatttcagaagaaagtggtagcttcctttccaagaacagttctgagc
acaggaatggataaccggtacctggtgttggcagtcaatactgtacagaacaaagaggga
aactgtgaaaagcgcctggtcatcactgcttcacagtcactagaaaataaagaactatgc
atccttaggaatgactggtgttctgttccagtagagccaggagatatcattcatttggag
ggagactgcacatctgacacttggataatagataaagattttggatatttgattctgtat
ccagacatgctgatttctggcaccagcatagccagtagtattcgatgtatgagaagagct
gtcctgagtgaaacttttaggagctctgatccagccacacgccaaatgctaattggtacg
gttctccatgaggtgtttcaaaaagccataaataatagctttgccccagaaaagctacaa
gaacttgcttttcaaacaattcaagaaataagacatttgaaggaaatagtagttattaag
attgcggagcttaaacataaagaaggaactggaataatcatcctgggagggccaagtgat
aatagtaaggataattcaacatgtaacattgaagtcgtgaaaccaatggatattgaagaa
agcatttggtcccctaggtttggattgaaaggcaaaatagatgttacagttggtgtgaaa
atacatcgagggtataaaacaaaatacaagataatgccgctggaacttaaaactggcaaa
gaatcaaattctattgaacaccgtagtcagggcctcatgctgtccttgattggcaagtgt
gactga

>gi568815588r:68315042_68571864|GENSCAN_predicted_peptide_5|139_aa
MAAATAAAALAAADPPPAMPQAAGAGGPTTRRDFYWLRSFLAGVNYYEAGNFRSCAQING
WIHGSYPFDVTRRRMQLGTVLPEFEKCLTMRDTMKYVYGHHGIRKGLYRGLSLNYIRCIP
SQAVAFTTYELMKQFFHLN

>gi568815588r:68315042_68571864|GENSCAN_predicted_CDS_5|420_bp
atggcggcggcgacggccgcggcagccctggcggcggccgatccccctcccgcaatgccg
caggcggcaggggccggagggcccacaacccgcagagacttctactggctgcgctccttt
ctggccggagttaattactacgaagctgggaatttcaggtcatgtgcacagattaatggc
tggatccatggcagctacccatttgatgtgactcgtcggcgaatgcaattaggaactgtt
ctgccggaatttgaaaagtgccttaccatgcgggatactatgaagtatgtctatggacac
catggaattcgaaaaggactctatcgtggtttatctcttaattacattcgctgtattccc
tctcaagcagtggcttttacaacatacgaacttatgaagcagttttttcacctcaactaa

>gi568815588r:68315042_68571864|GENSCAN_predicted_peptide_6|176_aa
MEKPLFPLVPLHWFGFGYTALVVSGGIVGYVKTGRAPSLAAGLLFGSLAGVGAYQLYQDP
RNVWDFLAATSVTFVGIMGMRSYYYGKFMPVGLIAGASLLMAAKVGVHWDANIWNYWEPT
SEPDKDTEVIWEVEDNYRPLLRVCSRKQKPYTYILAISNSLCRNLRRSKIIPQKNY

>gi568815588r:68315042_68571864|GENSCAN_predicted_CDS_6|531_bp
atggagaagcccctcttcccattagtgcctttgcattggtttggctttggctacacagca
ctggttgtttctggtgggatcgttggctatgtaaaaacaggcagggcgccgtccctggct
gcagggctgctctttggcagtctagccggcgtgggtgcttaccagctgtatcaggatcca
aggaatgtttgggatttcctagccgctacatctgttacttttgttggtattatgggaatg
agatcctactactatggaaaattcatgcctgtaggtttaattgcaggtgccagtttgctg
atggctgccaaagttggagttcactgggatgcaaatatttggaattattgggaaccaact
agtgagccagataaagacacagaggttatctgggaggtggaggataattatcgtcccctt
ttgagggtatgcagcaggaagcaaaagccctatacgtacatcctggccataagcaatagc
ctttgcaggaatcttcgacgatccaagattattcctcagaagaattattag