Result of FASTA (omim) for pF1KSDA0074
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0074, 741 aa
  1>>>pF1KSDA0074 741 - 741 aa - 741 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9609+/-0.000365; mu= 12.7956+/- 0.023
 mean_var=112.5901+/-23.018, 0's: 0 Z-trim(116.7): 16  B-trim: 651 in 1/53
 Lambda= 0.120872
 statistics sampled from 28120 (28128) to 28120 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.33), width:  16
 Scan time:  9.450

The best scores are:                                      opt bits E(85289)
NP_056156 (OMIM: 602332) condensin complex subunit ( 741) 4986 880.7       0
NP_001268639 (OMIM: 602332) condensin complex subu ( 730) 4870 860.5       0
XP_005263965 (OMIM: 602332) PREDICTED: condensin c ( 725) 4867 860.0       0
NP_001268640 (OMIM: 602332) condensin complex subu ( 717) 4776 844.1       0
NP_001268641 (OMIM: 602332) condensin complex subu ( 605) 4077 722.2 1.6e-207
XP_006712451 (OMIM: 602332) PREDICTED: condensin c ( 710) 3876 687.1 6.4e-197


>>NP_056156 (OMIM: 602332) condensin complex subunit 2 i  (741 aa)
 initn: 4986 init1: 4986 opt: 4986  Z-score: 4702.2  bits: 880.7 E(85289):    0
Smith-Waterman score: 4986; 100.0% identity (100.0% similar) in 741 aa overlap (1-741:1-741)

               10        20        30        40        50        60
pF1KSD MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
              670       680       690       700       710       720

              730       740 
pF1KSD EKNLKLEGTEDLSDVLVRQGD
       :::::::::::::::::::::
NP_056 EKNLKLEGTEDLSDVLVRQGD
              730       740 

>>NP_001268639 (OMIM: 602332) condensin complex subunit   (730 aa)
 initn: 4870 init1: 4870 opt: 4870  Z-score: 4593.0  bits: 860.5 E(85289):    0
Smith-Waterman score: 4888; 98.5% identity (98.5% similar) in 741 aa overlap (1-741:1-730)

               10        20        30        40        50        60
pF1KSD MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
       ::::::           :::::::::::::::::::::::::::::::::::::::::::
NP_001 MGPPGP-----------ETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
                          10        20        30        40         

               70        80        90       100       110       120
pF1KSD EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
      50        60        70        80        90       100         

              130       140       150       160       170       180
pF1KSD NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
     110       120       130       140       150       160         

              190       200       210       220       230       240
pF1KSD GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
     170       180       190       200       210       220         

              250       260       270       280       290       300
pF1KSD IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
     230       240       250       260       270       280         

              310       320       330       340       350       360
pF1KSD DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
     290       300       310       320       330       340         

              370       380       390       400       410       420
pF1KSD CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
     350       360       370       380       390       400         

              430       440       450       460       470       480
pF1KSD LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
     410       420       430       440       450       460         

              490       500       510       520       530       540
pF1KSD DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
     470       480       490       500       510       520         

              550       560       570       580       590       600
pF1KSD TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
     530       540       550       560       570       580         

              610       620       630       640       650       660
pF1KSD QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
     590       600       610       620       630       640         

              670       680       690       700       710       720
pF1KSD KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
     650       660       670       680       690       700         

              730       740 
pF1KSD EKNLKLEGTEDLSDVLVRQGD
       :::::::::::::::::::::
NP_001 EKNLKLEGTEDLSDVLVRQGD
     710       720       730

>>XP_005263965 (OMIM: 602332) PREDICTED: condensin compl  (725 aa)
 initn: 4867 init1: 4867 opt: 4867  Z-score: 4590.2  bits: 860.0 E(85289):    0
Smith-Waterman score: 4867; 100.0% identity (100.0% similar) in 722 aa overlap (1-722:1-722)

               10        20        30        40        50        60
pF1KSD MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
              670       680       690       700       710       720

              730       740 
pF1KSD EKNLKLEGTEDLSDVLVRQGD
       ::                   
XP_005 EKVGN                
                            

>>NP_001268640 (OMIM: 602332) condensin complex subunit   (717 aa)
 initn: 4815 init1: 4776 opt: 4776  Z-score: 4504.5  bits: 844.1 E(85289):    0
Smith-Waterman score: 4776; 100.0% identity (100.0% similar) in 711 aa overlap (31-741:7-717)

               10        20        30        40        50        60
pF1KSD MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
                                     ::::::::::::::::::::::::::::::
NP_001                         MGPPGPERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
                                       10        20        30      

               70        80        90       100       110       120
pF1KSD EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
         40        50        60        70        80        90      

              130       140       150       160       170       180
pF1KSD NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
        100       110       120       130       140       150      

              190       200       210       220       230       240
pF1KSD GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
        160       170       180       190       200       210      

              250       260       270       280       290       300
pF1KSD IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
        220       230       240       250       260       270      

              310       320       330       340       350       360
pF1KSD DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
        280       290       300       310       320       330      

              370       380       390       400       410       420
pF1KSD CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
        340       350       360       370       380       390      

              430       440       450       460       470       480
pF1KSD LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
        400       410       420       430       440       450      

              490       500       510       520       530       540
pF1KSD DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
        460       470       480       490       500       510      

              550       560       570       580       590       600
pF1KSD TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
        520       530       540       550       560       570      

              610       620       630       640       650       660
pF1KSD QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
        580       590       600       610       620       630      

              670       680       690       700       710       720
pF1KSD KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
        640       650       660       670       680       690      

              730       740 
pF1KSD EKNLKLEGTEDLSDVLVRQGD
       :::::::::::::::::::::
NP_001 EKNLKLEGTEDLSDVLVRQGD
        700       710       

>>NP_001268641 (OMIM: 602332) condensin complex subunit   (605 aa)
 initn: 4077 init1: 4077 opt: 4077  Z-score: 3846.9  bits: 722.2 E(85289): 1.6e-207
Smith-Waterman score: 4077; 100.0% identity (100.0% similar) in 605 aa overlap (137-741:1-605)

        110       120       130       140       150       160      
pF1KSD ITEHYSTCIKLSTENKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYA
                                     ::::::::::::::::::::::::::::::
NP_001                               MSEILKQKDTEPTNFKVAAGTLDASTKIYA
                                             10        20        30

        170       180       190       200       210       220      
pF1KSD VRVDAVHADVYRVLGGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRVDAVHADVYRVLGGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQN
               40        50        60        70        80        90

        230       240       250       260       270       280      
pF1KSD INNLNVSEADRKCEIDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INNLNVSEADRKCEIDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTG
              100       110       120       130       140       150

        290       300       310       320       330       340      
pF1KSD EPLELPELGCVEMTDLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPLELPELGCVEMTDLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKN
              160       170       180       190       200       210

        350       360       370       380       390       400      
pF1KSD DQVFDINAEVDESDCGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQVFDINAEVDESDCGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEM
              220       230       240       250       260       270

        410       420       430       440       450       460      
pF1KSD ISLGDGDIRTMCPLLSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISLGDGDIRTMCPLLSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKST
              280       290       300       310       320       330

        470       480       490       500       510       520      
pF1KSD KKDFEIDFEDDIDFDVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKDFEIDFEDDIDFDVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKP
              340       350       360       370       380       390

        530       540       550       560       570       580      
pF1KSD GTRLLKMAQGHRVETEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTRLLKMAQGHRVETEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNS
              400       410       420       430       440       450

        590       600       610       620       630       640      
pF1KSD DLSPYPCHPPKTAQQNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLSPYPCHPPKTAQQNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKK
              460       470       480       490       500       510

        650       660       670       680       690       700      
pF1KSD LKQSMWSLLTALSGKEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKQSMWSLLTALSGKEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNL
              520       530       540       550       560       570

        710       720       730       740 
pF1KSD SIPLAFACLLHLANEKNLKLEGTEDLSDVLVRQGD
       :::::::::::::::::::::::::::::::::::
NP_001 SIPLAFACLLHLANEKNLKLEGTEDLSDVLVRQGD
              580       590       600     

>>XP_006712451 (OMIM: 602332) PREDICTED: condensin compl  (710 aa)
 initn: 3853 init1: 3853 opt: 3876  Z-score: 3656.4  bits: 687.1 E(85289): 6.4e-197
Smith-Waterman score: 4684; 95.8% identity (95.8% similar) in 741 aa overlap (1-741:1-710)

               10        20        30        40        50        60
pF1KSD MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
       ::::::::::::::::::::::::::                               :::
XP_006 TEHYEEIEDYDYNNPNDTSNFCPGLQ-------------------------------TAQ
              550       560                                        

              610       620       630       640       650       660
pF1KSD QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
     570       580       590       600       610       620         

              670       680       690       700       710       720
pF1KSD KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
     630       640       650       660       670       680         

              730       740 
pF1KSD EKNLKLEGTEDLSDVLVRQGD
       :::::::::::::::::::::
XP_006 EKNLKLEGTEDLSDVLVRQGD
     690       700       710




741 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:48:52 2016 done: Wed Nov  2 23:48:54 2016
 Total Scan time:  9.450 Total Display time:  0.090

Function used was FASTA [36.3.4 Apr, 2011]
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