Result of FASTA (omim) for pF1KSDA0070
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0070, 597 aa
  1>>>pF1KSDA0070 597 - 597 aa - 597 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8978+/-0.000416; mu= 16.0291+/- 0.026
 mean_var=80.5524+/-16.748, 0's: 0 Z-trim(112.5): 31  B-trim: 1086 in 2/48
 Lambda= 0.142901
 statistics sampled from 21468 (21498) to 21468 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.252), width:  16
 Scan time:  8.720

The best scores are:                                      opt bits E(85289)
NP_005539 (OMIM: 601421,613641,613916) lysine--tRN ( 597) 3958 826.2       0
NP_001123561 (OMIM: 601421,613641,613916) lysine-- ( 625) 3835 800.8       0
XP_016878706 (OMIM: 601421,613641,613916) PREDICTE ( 441) 2956 619.5 7.1e-177
XP_011508013 (OMIM: 610956,611105) PREDICTED: aspa ( 482)  270 65.8 3.8e-10
XP_006711490 (OMIM: 610956,611105) PREDICTED: aspa ( 594)  270 65.9 4.5e-10
NP_060592 (OMIM: 610956,611105) aspartate--tRNA li ( 645)  270 65.9 4.9e-10
NP_001280241 (OMIM: 603084,615281) aspartate--tRNA ( 401)  153 41.6   0.006
XP_016858978 (OMIM: 603084,615281) PREDICTED: aspa ( 468)  153 41.7  0.0068
NP_001340 (OMIM: 603084,615281) aspartate--tRNA li ( 501)  153 41.7  0.0072


>>NP_005539 (OMIM: 601421,613641,613916) lysine--tRNA li  (597 aa)
 initn: 3958 init1: 3958 opt: 3958  Z-score: 4410.9  bits: 826.2 E(85289):    0
Smith-Waterman score: 3958; 99.8% identity (100.0% similar) in 597 aa overlap (1-597:1-597)

               10        20        30        40        50        60
pF1KSD MAAVQAAEVKVDGSEPKLSKNELKRRLKAEKKVAEKEAKQKELSEKQLSQATAAATNHTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAAVQAAEVKVDGSEPKLSKNELKRRLKAEKKVAEKEAKQKELSEKQLSQATAAATNHTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD IIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD MVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD GLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYG
              490       500       510       520       530       540

              550       560       570       580       590       
pF1KSD LPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLESTTVGSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
NP_005 LPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLESTTVGTSV
              550       560       570       580       590       

>>NP_001123561 (OMIM: 601421,613641,613916) lysine--tRNA  (625 aa)
 initn: 3835 init1: 3835 opt: 3835  Z-score: 4273.5  bits: 800.8 E(85289):    0
Smith-Waterman score: 3835; 99.5% identity (100.0% similar) in 578 aa overlap (20-597:48-625)

                          10        20        30        40         
pF1KSD            MAAVQAAEVKVDGSEPKLSKNELKRRLKAEKKVAEKEAKQKELSEKQLS
                                     ..::::::::::::::::::::::::::::
NP_001 SWAEWGHRELRLGQLAPFTAPHKDKSFSDQRSELKRRLKAEKKVAEKEAKQKELSEKQLS
        20        30        40        50        60        70       

      50        60        70        80        90       100         
pF1KSD QATAAATNHTTDNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QATAAATNHTTDNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFI
        80        90       100       110       120       130       

     110       120       130       140       150       160         
pF1KSD QKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEF
       140       150       160       170       180       190       

     170       180       190       200       210       220         
pF1KSD IHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQ
       200       210       220       230       240       250       

     230       240       250       260       270       280         
pF1KSD RYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNE
       260       270       280       290       300       310       

     290       300       310       320       330       340         
pF1KSD LDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHD
       320       330       340       350       360       370       

     350       360       370       380       390       400         
pF1KSD LMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLP
       380       390       400       410       420       430       

     410       420       430       440       450       460         
pF1KSD ETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIM
       440       450       460       470       480       490       

     470       480       490       500       510       520         
pF1KSD SPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFI
       500       510       520       530       540       550       

     530       540       550       560       570       580         
pF1KSD DENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLE
       560       570       580       590       600       610       

     590       
pF1KSD STTVGSSV
       :::::.::
NP_001 STTVGTSV
       620     

>>XP_016878706 (OMIM: 601421,613641,613916) PREDICTED: l  (441 aa)
 initn: 2956 init1: 2956 opt: 2956  Z-score: 3296.4  bits: 619.5 E(85289): 7.1e-177
Smith-Waterman score: 2956; 99.8% identity (100.0% similar) in 441 aa overlap (157-597:1-441)

        130       140       150       160       170       180      
pF1KSD KVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQG
                                     ::::::::::::::::::::::::::::::
XP_016                               MANSRNYKSEEEFIHINNKLRRGDIIGVQG
                                             10        20        30

        190       200       210       220       230       240      
pF1KSD NPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFII
               40        50        60        70        80        90

        250       260       270       280       290       300      
pF1KSD RSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKM
              100       110       120       130       140       150

        310       320       330       340       350       360      
pF1KSD LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHIT
              160       170       180       190       200       210

        370       380       390       400       410       420      
pF1KSD GSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDI
              220       230       240       250       260       270

        430       440       450       460       470       480      
pF1KSD CVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERF
              280       290       300       310       320       330

        490       500       510       520       530       540      
pF1KSD ELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAG
              340       350       360       370       380       390

        550       560       570       580       590       
pF1KSD WGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLESTTVGSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::.::
XP_016 WGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLESTTVGTSV
              400       410       420       430       440 

>>XP_011508013 (OMIM: 610956,611105) PREDICTED: aspartat  (482 aa)
 initn: 179 init1: 120 opt: 270  Z-score: 303.1  bits: 65.8 E(85289): 3.8e-10
Smith-Waterman score: 270; 32.4% identity (60.3% similar) in 179 aa overlap (185-358:129-301)

          160       170       180       190       200       210    
pF1KSD QVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLP
                                     : :: :   ::. :      ::. : . ::
XP_011 SAASVKKILCEAPVESVVQVSGTVISRPAGQENP-KMPTGEIEIKVKTAELLNAC-KKLP
      100       110       120       130        140       150       

            220       230       240        250       260           
pF1KSD HL--HFGLKDKETRYRQRYLDLILNDFVRQ-KFIIRSKIITYIRSFLDEL-GFLEIETP-
           .:  : .  : . ::::  : .:  : .. .::...  .: .: .: ::..:::: 
XP_011 FEIKNFVKKTEALRLQYRYLD--LRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPT
        160       170         180       190       200       210    

     270       280       290       300       310       320         
pF1KSD MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL
       ...  ::::  : :..   :      .  .:. ....:.:::.:: ....: .:.::   
XP_011 LFKRTPGGA--KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRP
          220         230       240       250       260       270  

     330       340       350       360       370       380         
pF1KSD THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTP
        ..::::  .. :...:   .. . : ..                               
XP_011 DRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDK
            280       290       300       310       320       330  

>>XP_006711490 (OMIM: 610956,611105) PREDICTED: aspartat  (594 aa)
 initn: 258 init1: 120 opt: 270  Z-score: 301.7  bits: 65.9 E(85289): 4.5e-10
Smith-Waterman score: 346; 26.8% identity (53.7% similar) in 441 aa overlap (185-571:129-554)

          160       170       180       190       200       210    
pF1KSD QVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLP
                                     : :: :   ::. :      ::. : . ::
XP_006 SAASVKKILCEAPVESVVQVSGTVISRPAGQENP-KMPTGEIEIKVKTAELLNAC-KKLP
      100       110       120       130        140       150       

            220       230       240        250       260           
pF1KSD HL--HFGLKDKETRYRQRYLDLILNDFVRQ-KFIIRSKIITYIRSFLDEL-GFLEIETP-
           .:  : .  : . ::::  : .:  : .. .::...  .: .: .: ::..:::: 
XP_006 FEIKNFVKKTEALRLQYRYLD--LRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPT
        160       170         180       190       200       210    

     270       280       290       300       310       320         
pF1KSD MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL
       ...  ::::  : :..   :      .  .:. ....:.:::.:: ....: .:.::   
XP_006 LFKRTPGGA--KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRP
          220         230       240       250       260       270  

     330       340       350       360                370          
pF1KSD THNPEFTTCEFYMAYADYHDLMEITEKMVSG---------MVKHITGSYK---VTYHPDG
        ..::::  .. :...:   .. . : ...          .:   : ..    .::  : 
XP_006 DRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDK
            280       290       300       310       320       330  

          380       390          400           410           420   
pF1KSD PE---GQAYDVDFTPPFR--RINMVEE-LEKALG----MKLPETNLF----ETEETRKIL
       :.   :.   .:..  ::  .:..... : :  :    . .::   .    . :  :.. 
XP_006 PDTRFGMKI-IDISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFA
            340        350       360       370       380       390 

                430        440         450       460         470   
pF1KSD DD---IC--VAKA-VECPPPRTT--ARLLDKLVGEFLEVTCINPTFI--CDHPQIMS---
        :    :  ..:  .::     :  . : :  .  :: :. . : :.   ..:. .    
XP_006 ADHFNQCSLLGKLRLECADLLETRGVVLRDPTLFSFLWVVDF-PLFLPKEENPRELESAH
             400       410       420       430        440       450

                        480       490       500       510       520
pF1KSD -PLAKWHRS---------KEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKA
        :..  : :         :.. .....: .  .:: ..  ....   :: ..    :   
XP_006 HPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLLK---
              460       470       480       490       500          

              530       540       550       560       570       580
pF1KSD AGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKE
         .:  :.   ..  ::.:: :: .: ..:.::.  ..: : .:..:. ::         
XP_006 --EDVKML--SHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPKSFRGHDLM
         510         520       530       540       550       560   

              590                     
pF1KSD NVATTDTLESTTVGSSV              
                                      
XP_006 SNTPDSVPPEELKPYHIRVSKPTDSKAERAH
           570       580       590    

>>NP_060592 (OMIM: 610956,611105) aspartate--tRNA ligase  (645 aa)
 initn: 258 init1: 120 opt: 270  Z-score: 301.2  bits: 65.9 E(85289): 4.9e-10
Smith-Waterman score: 270; 32.4% identity (60.3% similar) in 179 aa overlap (185-358:129-301)

          160       170       180       190       200       210    
pF1KSD QVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLP
                                     : :: :   ::. :      ::. : . ::
NP_060 SAASVKKILCEAPVESVVQVSGTVISRPAGQENP-KMPTGEIEIKVKTAELLNAC-KKLP
      100       110       120       130        140       150       

            220       230       240        250       260           
pF1KSD HL--HFGLKDKETRYRQRYLDLILNDFVRQ-KFIIRSKIITYIRSFLDEL-GFLEIETP-
           .:  : .  : . ::::  : .:  : .. .::...  .: .: .: ::..:::: 
NP_060 FEIKNFVKKTEALRLQYRYLD--LRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPT
        160       170         180       190       200       210    

     270       280       290       300       310       320         
pF1KSD MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL
       ...  ::::  : :..   :      .  .:. ....:.:::.:: ....: .:.::   
NP_060 LFKRTPGGA--KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRP
          220         230       240       250       260       270  

     330       340       350       360       370       380         
pF1KSD THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTP
        ..::::  .. :...:   .. . : ..                               
NP_060 DRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDK
            280       290       300       310       320       330  

>>NP_001280241 (OMIM: 603084,615281) aspartate--tRNA lig  (401 aa)
 initn: 232 init1: 114 opt: 153  Z-score: 174.0  bits: 41.6 E(85289): 0.006
Smith-Waterman score: 293; 24.6% identity (56.9% similar) in 357 aa overlap (222-571:75-393)

             200       210       220       230       240       250 
pF1KSD KKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKII
                                     ...::  .: .::  ..  .  : ..: : 
NP_001 ISLAEPRLPLQLDDAVRPEAEGEEEGRATVNQDTRLDNRVIDL-RTSTSQAVFRLQSGIC
           50        60        70        80         90       100   

             260        270       280       290       300       310
pF1KSD TYIRSFLDELGFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVG
         .:  : . ::.::.:: ...    :..    ..: ..   : :.  .:.::..: . .
NP_001 HLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYFKN---NAYLAQSPQLYKQMCICA
           110       120       130       140          150       160

              320        330       340       350       360         
pF1KSD GIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSY
        ...:. ::  :: :  .   :  ::.  .. ::. .::   :. :.... ::. . :  
NP_001 DFEKVFSIGPVFRAEDSNTHRHLTEFVGLDIEMAF-NYH-YHEVMEEIADTMVQIFKG-L
              170       180       190         200       210        

     370       380        390       400         410       420      
pF1KSD KVTYHPDGPEGQAYDVDFT-PPFRRINMVEELE--KALGMKLPETNLFETEETRKILDDI
       .  ..    : :. . .:   ::. .. . .::  .::.: : :...   .:     ::.
NP_001 QERFQT---EIQTVNKQFPCEPFKFLEPTLRLEYCEALAM-LREAGVEMGDE-----DDL
       220          230       240       250        260             

        430       440       450       460        470       480     
pF1KSD CVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICD-HPQIMSPLAKWHRSKEG-LTE
        . .              .::.:....    .  .: : .:  . :.      ..   ..
NP_001 STPN--------------EKLLGHLVKEKYDTDFYILDKYPLAVRPFYTMPDPRNPKQSN
      270                     280       290       300       310    

          490       500       510       520       530       540    
pF1KSD RFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPT
        ...:.  .:: ..  ...::    ::. :.:  ..  : : .   . .  ....: :: 
NP_001 SYDMFMRGEEILSGAQRIHDP----QLLTERALHHGI-DLEKI---KAYIDSFRFGAPPH
          320       330           340        350          360      

          550       560       570       580       590       
pF1KSD AGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLESTTVGSSV
       :: :.:..::.:..   .:.... .::                          
NP_001 AGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP                  
        370       380       390       400                   

>>XP_016858978 (OMIM: 603084,615281) PREDICTED: aspartat  (468 aa)
 initn: 232 init1: 114 opt: 153  Z-score: 173.0  bits: 41.7 E(85289): 0.0068
Smith-Waterman score: 328; 23.3% identity (55.1% similar) in 477 aa overlap (123-571:24-460)

            100       110       120       130       140       150  
pF1KSD DPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV
                                     : .. : .:.:..::.: :  :  :: .  
XP_016        MIQSQEKPDRVLVRVRDLTIQKADEVVWVRARVHTSRAKG-KQCFLVLRQQQF
                      10        20        30        40         50  

            160       170       180       190       200       210  
pF1KSD KLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHM
       ..:...   .. :.. ....  .. . .:. :.:   :...   :    .. :    ...
XP_016 NVQALVAVGDHASKQ-MVKFAANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYV
             60         70        80        90       100       110 

                220                        230       240       250 
pF1KSD L----PHLHFGLKD-----------------KETRYRQRYLDLILNDFVRQKFIIRSKII
       .    :.: . : :                 ..::  .: .::  ..  .  : ..: : 
XP_016 ISLAEPRLPLQLDDAVRPEAEGEEEGRATVNQDTRLDNRVIDL-RTSTSQAVFRLQSGIC
             120       130       140       150        160       170

             260        270       280       290       300       310
pF1KSD TYIRSFLDELGFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVG
         .:  : . ::.::.:: ...    :..    ..: ..   : :.  .:.::..: . .
XP_016 HLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYFKN---NAYLAQSPQLYKQMCICA
              180       190       200          210       220       

              320        330       340       350       360         
pF1KSD GIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSY
        ...:. ::  :: :  .   :  ::.  .. ::. .::   :. :.... ::. . :  
XP_016 DFEKVFSIGPVFRAEDSNTHRHLTEFVGLDIEMAF-NYH-YHEVMEEIADTMVQIFKG-L
       230       240       250       260         270       280     

     370       380        390       400         410       420      
pF1KSD KVTYHPDGPEGQAYDVDFT-PPFRRINMVEELE--KALGMKLPETNLFETEETRKILDDI
       .  ..    : :. . .:   ::. .. . .::  .::.: : :...   .:     ::.
XP_016 QERFQ---TEIQTVNKQFPCEPFKFLEPTLRLEYCEALAM-LREAGVEMGDE-----DDL
             290       300       310       320        330          

        430       440       450       460        470       480     
pF1KSD CVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICD-HPQIMSPLAKWHRSKEG-LTE
        . .              .::.:....    .  .: : .:  . :.      ..   ..
XP_016 STPN--------------EKLLGHLVKEKYDTDFYILDKYPLAVRPFYTMPDPRNPKQSN
                       340       350       360       370       380 

          490       500       510       520       530       540    
pF1KSD RFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPT
        ...:.  .:: ..  ...::    ::. :.:  ..  : : .   . .  ....: :: 
XP_016 SYDMFMRGEEILSGAQRIHDP----QLLTERALHHGI-DLEKI---KAYIDSFRFGAPPH
             390       400           410           420       430   

          550       560       570       580       590       
pF1KSD AGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLESTTVGSSV
       :: :.:..::.:..   .:.... .::                          
XP_016 AGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP                  
           440       450       460                          

>>NP_001340 (OMIM: 603084,615281) aspartate--tRNA ligase  (501 aa)
 initn: 232 init1: 114 opt: 153  Z-score: 172.5  bits: 41.7 E(85289): 0.0072
Smith-Waterman score: 328; 23.3% identity (55.1% similar) in 477 aa overlap (123-571:57-493)

            100       110       120       130       140       150  
pF1KSD DPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV
                                     : .. : .:.:..::.: :  :  :: .  
NP_001 ERYGISSMIQSQEKPDRVLVRVRDLTIQKADEVVWVRARVHTSRAKG-KQCFLVLRQQQF
         30        40        50        60        70         80     

            160       170       180       190       200       210  
pF1KSD KLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHM
       ..:...   .. :.. ....  .. . .:. :.:   :...   :    .. :    ...
NP_001 NVQALVAVGDHASKQ-MVKFAANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYV
          90       100        110       120       130       140    

                220                        230       240       250 
pF1KSD L----PHLHFGLKD-----------------KETRYRQRYLDLILNDFVRQKFIIRSKII
       .    :.: . : :                 ..::  .: .::  ..  .  : ..: : 
NP_001 ISLAEPRLPLQLDDAVRPEAEGEEEGRATVNQDTRLDNRVIDL-RTSTSQAVFRLQSGIC
          150       160       170       180        190       200   

             260        270       280       290       300       310
pF1KSD TYIRSFLDELGFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVG
         .:  : . ::.::.:: ...    :..    ..: ..   : :.  .:.::..: . .
NP_001 HLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYFKN---NAYLAQSPQLYKQMCICA
           210       220       230       240          250       260

              320        330       340       350       360         
pF1KSD GIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSY
        ...:. ::  :: :  .   :  ::.  .. ::. .::   :. :.... ::. . :  
NP_001 DFEKVFSIGPVFRAEDSNTHRHLTEFVGLDIEMAF-NYH-YHEVMEEIADTMVQIFKG-L
              270       280       290         300       310        

     370       380        390       400         410       420      
pF1KSD KVTYHPDGPEGQAYDVDFT-PPFRRINMVEELE--KALGMKLPETNLFETEETRKILDDI
       .  ..    : :. . .:   ::. .. . .::  .::.: : :...   .:     ::.
NP_001 QERFQ---TEIQTVNKQFPCEPFKFLEPTLRLEYCEALAM-LREAGVEMGDE-----DDL
       320          330       340       350        360             

        430       440       450       460        470       480     
pF1KSD CVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICD-HPQIMSPLAKWHRSKEG-LTE
        . .              .::.:....    .  .: : .:  . :.      ..   ..
NP_001 STPN--------------EKLLGHLVKEKYDTDFYILDKYPLAVRPFYTMPDPRNPKQSN
      370                     380       390       400       410    

          490       500       510       520       530       540    
pF1KSD RFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPT
        ...:.  .:: ..  ...::    ::. :.:  ..  : : .   . .  ....: :: 
NP_001 SYDMFMRGEEILSGAQRIHDP----QLLTERALHHGI-DLEKI---KAYIDSFRFGAPPH
          420       430           440        450          460      

          550       560       570       580       590       
pF1KSD AGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLESTTVGSSV
       :: :.:..::.:..   .:.... .::                          
NP_001 AGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP                  
        470       480       490       500                   




597 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:48:11 2016 done: Wed Nov  2 23:48:12 2016
 Total Scan time:  8.720 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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