Result of FASTA (omim) for pF1KSDA0063
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0063, 202 aa
  1>>>pF1KSDA0063 202 - 202 aa - 202 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9817+/-0.000295; mu= 14.7548+/- 0.018
 mean_var=57.5728+/-11.891, 0's: 0 Z-trim(116.7): 20  B-trim: 0 in 0/56
 Lambda= 0.169031
 statistics sampled from 28055 (28075) to 28055 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.329), width:  16
 Scan time:  4.780

The best scores are:                                      opt bits E(85289)
XP_005261934 (OMIM: 615323) PREDICTED: josephin-1  ( 202) 1405 350.3 1.2e-96
XP_005261933 (OMIM: 615323) PREDICTED: josephin-1  ( 202) 1405 350.3 1.2e-96
XP_005261936 (OMIM: 615323) PREDICTED: josephin-1  ( 202) 1405 350.3 1.2e-96
XP_005261935 (OMIM: 615323) PREDICTED: josephin-1  ( 202) 1405 350.3 1.2e-96
NP_055691 (OMIM: 615323) josephin-1 [Homo sapiens] ( 202) 1405 350.3 1.2e-96
NP_001257568 (OMIM: 615324) josephin-2 isoform 1 [ ( 188)  677 172.8 3.1e-43
NP_001257569 (OMIM: 615324) josephin-2 isoform 1 [ ( 188)  677 172.8 3.1e-43
NP_612207 (OMIM: 615324) josephin-2 isoform 1 [Hom ( 188)  677 172.8 3.1e-43
XP_011524736 (OMIM: 615324) PREDICTED: josephin-2  ( 188)  677 172.8 3.1e-43
NP_001257615 (OMIM: 615324) josephin-2 isoform 1 [ ( 188)  677 172.8 3.1e-43
NP_001257570 (OMIM: 615324) josephin-2 isoform 2 [ ( 146)  331 88.3 6.4e-18
NP_004984 (OMIM: 109150,607047) ataxin-3 reference ( 361)  134 40.5   0.004


>>XP_005261934 (OMIM: 615323) PREDICTED: josephin-1 isof  (202 aa)
 initn: 1405 init1: 1405 opt: 1405  Z-score: 1856.1  bits: 350.3 E(85289): 1.2e-96
Smith-Waterman score: 1405; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KSD MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
              130       140       150       160       170       180

              190       200  
pF1KSD NCELLLVVPEEVEAHQSWRTDV
       ::::::::::::::::::::::
XP_005 NCELLLVVPEEVEAHQSWRTDV
              190       200  

>>XP_005261933 (OMIM: 615323) PREDICTED: josephin-1 isof  (202 aa)
 initn: 1405 init1: 1405 opt: 1405  Z-score: 1856.1  bits: 350.3 E(85289): 1.2e-96
Smith-Waterman score: 1405; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KSD MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
              130       140       150       160       170       180

              190       200  
pF1KSD NCELLLVVPEEVEAHQSWRTDV
       ::::::::::::::::::::::
XP_005 NCELLLVVPEEVEAHQSWRTDV
              190       200  

>>XP_005261936 (OMIM: 615323) PREDICTED: josephin-1 isof  (202 aa)
 initn: 1405 init1: 1405 opt: 1405  Z-score: 1856.1  bits: 350.3 E(85289): 1.2e-96
Smith-Waterman score: 1405; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KSD MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
              130       140       150       160       170       180

              190       200  
pF1KSD NCELLLVVPEEVEAHQSWRTDV
       ::::::::::::::::::::::
XP_005 NCELLLVVPEEVEAHQSWRTDV
              190       200  

>>XP_005261935 (OMIM: 615323) PREDICTED: josephin-1 isof  (202 aa)
 initn: 1405 init1: 1405 opt: 1405  Z-score: 1856.1  bits: 350.3 E(85289): 1.2e-96
Smith-Waterman score: 1405; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KSD MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
              130       140       150       160       170       180

              190       200  
pF1KSD NCELLLVVPEEVEAHQSWRTDV
       ::::::::::::::::::::::
XP_005 NCELLLVVPEEVEAHQSWRTDV
              190       200  

>>NP_055691 (OMIM: 615323) josephin-1 [Homo sapiens]      (202 aa)
 initn: 1405 init1: 1405 opt: 1405  Z-score: 1856.1  bits: 350.3 E(85289): 1.2e-96
Smith-Waterman score: 1405; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KSD MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
              130       140       150       160       170       180

              190       200  
pF1KSD NCELLLVVPEEVEAHQSWRTDV
       ::::::::::::::::::::::
NP_055 NCELLLVVPEEVEAHQSWRTDV
              190       200  

>>NP_001257568 (OMIM: 615324) josephin-2 isoform 1 [Homo  (188 aa)
 initn: 613 init1: 482 opt: 677  Z-score: 897.1  bits: 172.8 E(85289): 3.1e-43
Smith-Waterman score: 677; 55.2% identity (79.2% similar) in 183 aa overlap (20-201:8-188)

               10        20        30        40        50        60
pF1KSD MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
                          : .:: .:::.:: ::::.::::::.:..  :.... .:: 
NP_001             MSQAPGAQPSPPTVYHERQRLELCAVHALNNVLQQQ-LFSQEAADEIC
                           10        20        30         40       

               70        80        90       100       110       120
pF1KSD QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
       .::.:.. ..::. :.::.:::::::::::::  :  :::::.:: .. .:: .:.:.:.
NP_001 KRLAPDSRLNPHR-SLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLIL
        50        60         70        80        90       100      

              130       140       150       160       170       180
pF1KSD NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
       :::: .  : :.:::.:.::. .:.: :.::::::::. :: .: :. .: ::   :   
NP_001 NLPSPVSLGLLSLPLRRRHWVALRQVDGVYYNLDSKLRAPEALGDEDGVRAFLAAALAQG
        110       120       130       140       150       160      

              190        200  
pF1KSD NCELLLVVPEEVEAHQSW-RTDV
        ::.:::: .::: . :: ::: 
NP_001 LCEVLLVVTKEVEEKGSWLRTD 
        170       180         

>>NP_001257569 (OMIM: 615324) josephin-2 isoform 1 [Homo  (188 aa)
 initn: 613 init1: 482 opt: 677  Z-score: 897.1  bits: 172.8 E(85289): 3.1e-43
Smith-Waterman score: 677; 55.2% identity (79.2% similar) in 183 aa overlap (20-201:8-188)

               10        20        30        40        50        60
pF1KSD MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
                          : .:: .:::.:: ::::.::::::.:..  :.... .:: 
NP_001             MSQAPGAQPSPPTVYHERQRLELCAVHALNNVLQQQ-LFSQEAADEIC
                           10        20        30         40       

               70        80        90       100       110       120
pF1KSD QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
       .::.:.. ..::. :.::.:::::::::::::  :  :::::.:: .. .:: .:.:.:.
NP_001 KRLAPDSRLNPHR-SLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLIL
        50        60         70        80        90       100      

              130       140       150       160       170       180
pF1KSD NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
       :::: .  : :.:::.:.::. .:.: :.::::::::. :: .: :. .: ::   :   
NP_001 NLPSPVSLGLLSLPLRRRHWVALRQVDGVYYNLDSKLRAPEALGDEDGVRAFLAAALAQG
        110       120       130       140       150       160      

              190        200  
pF1KSD NCELLLVVPEEVEAHQSW-RTDV
        ::.:::: .::: . :: ::: 
NP_001 LCEVLLVVTKEVEEKGSWLRTD 
        170       180         

>>NP_612207 (OMIM: 615324) josephin-2 isoform 1 [Homo sa  (188 aa)
 initn: 613 init1: 482 opt: 677  Z-score: 897.1  bits: 172.8 E(85289): 3.1e-43
Smith-Waterman score: 677; 55.2% identity (79.2% similar) in 183 aa overlap (20-201:8-188)

               10        20        30        40        50        60
pF1KSD MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
                          : .:: .:::.:: ::::.::::::.:..  :.... .:: 
NP_612             MSQAPGAQPSPPTVYHERQRLELCAVHALNNVLQQQ-LFSQEAADEIC
                           10        20        30         40       

               70        80        90       100       110       120
pF1KSD QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
       .::.:.. ..::. :.::.:::::::::::::  :  :::::.:: .. .:: .:.:.:.
NP_612 KRLAPDSRLNPHR-SLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLIL
        50        60         70        80        90       100      

              130       140       150       160       170       180
pF1KSD NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
       :::: .  : :.:::.:.::. .:.: :.::::::::. :: .: :. .: ::   :   
NP_612 NLPSPVSLGLLSLPLRRRHWVALRQVDGVYYNLDSKLRAPEALGDEDGVRAFLAAALAQG
        110       120       130       140       150       160      

              190        200  
pF1KSD NCELLLVVPEEVEAHQSW-RTDV
        ::.:::: .::: . :: ::: 
NP_612 LCEVLLVVTKEVEEKGSWLRTD 
        170       180         

>>XP_011524736 (OMIM: 615324) PREDICTED: josephin-2 isof  (188 aa)
 initn: 613 init1: 482 opt: 677  Z-score: 897.1  bits: 172.8 E(85289): 3.1e-43
Smith-Waterman score: 677; 55.2% identity (79.2% similar) in 183 aa overlap (20-201:8-188)

               10        20        30        40        50        60
pF1KSD MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
                          : .:: .:::.:: ::::.::::::.:..  :.... .:: 
XP_011             MSQAPGAQPSPPTVYHERQRLELCAVHALNNVLQQQ-LFSQEAADEIC
                           10        20        30         40       

               70        80        90       100       110       120
pF1KSD QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
       .::.:.. ..::. :.::.:::::::::::::  :  :::::.:: .. .:: .:.:.:.
XP_011 KRLAPDSRLNPHR-SLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLIL
        50        60         70        80        90       100      

              130       140       150       160       170       180
pF1KSD NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
       :::: .  : :.:::.:.::. .:.: :.::::::::. :: .: :. .: ::   :   
XP_011 NLPSPVSLGLLSLPLRRRHWVALRQVDGVYYNLDSKLRAPEALGDEDGVRAFLAAALAQG
        110       120       130       140       150       160      

              190        200  
pF1KSD NCELLLVVPEEVEAHQSW-RTDV
        ::.:::: .::: . :: ::: 
XP_011 LCEVLLVVTKEVEEKGSWLRTD 
        170       180         

>>NP_001257615 (OMIM: 615324) josephin-2 isoform 1 [Homo  (188 aa)
 initn: 613 init1: 482 opt: 677  Z-score: 897.1  bits: 172.8 E(85289): 3.1e-43
Smith-Waterman score: 677; 55.2% identity (79.2% similar) in 183 aa overlap (20-201:8-188)

               10        20        30        40        50        60
pF1KSD MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
                          : .:: .:::.:: ::::.::::::.:..  :.... .:: 
NP_001             MSQAPGAQPSPPTVYHERQRLELCAVHALNNVLQQQ-LFSQEAADEIC
                           10        20        30         40       

               70        80        90       100       110       120
pF1KSD QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
       .::.:.. ..::. :.::.:::::::::::::  :  :::::.:: .. .:: .:.:.:.
NP_001 KRLAPDSRLNPHR-SLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLIL
        50        60         70        80        90       100      

              130       140       150       160       170       180
pF1KSD NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
       :::: .  : :.:::.:.::. .:.: :.::::::::. :: .: :. .: ::   :   
NP_001 NLPSPVSLGLLSLPLRRRHWVALRQVDGVYYNLDSKLRAPEALGDEDGVRAFLAAALAQG
        110       120       130       140       150       160      

              190        200  
pF1KSD NCELLLVVPEEVEAHQSW-RTDV
        ::.:::: .::: . :: ::: 
NP_001 LCEVLLVVTKEVEEKGSWLRTD 
        170       180         




202 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:41:44 2016 done: Wed Nov  2 23:41:44 2016
 Total Scan time:  4.780 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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