Result of FASTA (ccds) for pF1KSDA0035
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0035, 709 aa
  1>>>pF1KSDA0035 709 - 709 aa - 709 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.3155+/-0.00108; mu= -19.7292+/- 0.066
 mean_var=524.9732+/-108.134, 0's: 0 Z-trim(116.4): 50  B-trim: 0 in 0/53
 Lambda= 0.055976
 statistics sampled from 16951 (16995) to 16951 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.522), width:  16
 Scan time:  4.010

The best scores are:                                      opt bits E(32554)
CCDS65926.1 NOLC1 gene_id:9221|Hs108|chr10         ( 709) 4449 374.0 4.2e-103
CCDS7530.1 NOLC1 gene_id:9221|Hs108|chr10          ( 699) 3034 259.7 1.1e-68
CCDS65925.1 NOLC1 gene_id:9221|Hs108|chr10         ( 700) 3034 259.7 1.1e-68


>>CCDS65926.1 NOLC1 gene_id:9221|Hs108|chr10              (709 aa)
 initn: 4449 init1: 4449 opt: 4449  Z-score: 1964.4  bits: 374.0 E(32554): 4.2e-103
Smith-Waterman score: 4449; 99.7% identity (99.7% similar) in 709 aa overlap (1-709:1-709)

               10        20        30        40        50        60
pF1KSD MAAAGIRRVVPSDLYPLVLGFLRDNQLSEVANKFAKATGATQQDANASSLLDIYSFWLKS
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MADAGIRRVVPSDLYPLVLGFLRDNQLSEVANKFAKATGATQQDANASSLLDIYSFWLKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD AKVPERKLQANGPVAKKAKKKASSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AKVPERKLQANGPVAKKAKKKASSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD AKASESSSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AKASESSSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KNQKPKITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 KNQKPKITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATPK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KVWTITSVRAETVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 KVWTITSVRAETVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKPPTKAVVSKATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKPPTKAVVSKATT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD KPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 KPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQPV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD GGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALPLPAKQAPQGSRDSS
       ::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
CCDS65 GGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALSLPAKQAPQGSRDSS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD SDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD EKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEEKKKAAVVVSKSGSLKKRKQNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEEKKKAAVVVSKSGSLKKRKQNE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD AAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIEVDSRVADNSFDAKRGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIEVDSRVADNSFDAKRGA
              610       620       630       640       650       660

              670       680       690       700         
pF1KSD AGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFDSE
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFDSE
              670       680       690       700         

>>CCDS7530.1 NOLC1 gene_id:9221|Hs108|chr10               (699 aa)
 initn: 2875 init1: 2875 opt: 3034  Z-score: 1346.9  bits: 259.7 E(32554): 1.1e-68
Smith-Waterman score: 4356; 98.3% identity (98.3% similar) in 709 aa overlap (1-709:1-699)

               10        20        30        40        50        60
pF1KSD MAAAGIRRVVPSDLYPLVLGFLRDNQLSEVANKFAKATGATQQDANASSLLDIYSFWLKS
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MADAGIRRVVPSDLYPLVLGFLRDNQLSEVANKFAKATGATQQDANASSLLDIYSFWLKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD AKVPERKLQANGPVAKKAKKKASSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AKVPERKLQANGPVAKKAKKKASSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD AKASESSSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AKASESSSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KNQKPKITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KNQKPKITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATPK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KVWTITSVRAETVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYS
       :          :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 K----------TVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYS
                        250       260       270       280       290

              310       320       330       340       350       360
pF1KSD SVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKPPTKAVVSKATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKPPTKAVVSKATT
              300       310       320       330       340       350

              370       380       390       400       410       420
pF1KSD KPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQPV
              360       370       380       390       400       410

              430       440       450       460       470       480
pF1KSD GGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALPLPAKQAPQGSRDSS
       ::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
CCDS75 GGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALSLPAKQAPQGSRDSS
              420       430       440       450       460       470

              490       500       510       520       530       540
pF1KSD SDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEE
              480       490       500       510       520       530

              550       560       570       580       590       600
pF1KSD EKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEEKKKAAVVVSKSGSLKKRKQNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEEKKKAAVVVSKSGSLKKRKQNE
              540       550       560       570       580       590

              610       620       630       640       650       660
pF1KSD AAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIEVDSRVADNSFDAKRGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIEVDSRVADNSFDAKRGA
              600       610       620       630       640       650

              670       680       690       700         
pF1KSD AGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFDSE
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFDSE
              660       670       680       690         

>>CCDS65925.1 NOLC1 gene_id:9221|Hs108|chr10              (700 aa)
 initn: 2875 init1: 2875 opt: 3034  Z-score: 1346.9  bits: 259.7 E(32554): 1.1e-68
Smith-Waterman score: 4341; 98.0% identity (98.2% similar) in 710 aa overlap (1-709:1-700)

               10        20        30        40        50          
pF1KSD MAAAGIRRVVPSDLYPLVLGFLRDNQLSEVANKFAKATGATQQDANASSLLDIYSFWL-K
       :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: .
CCDS65 MADAGIRRVVPSDLYPLVLGFLRDNQLSEVANKFAKATGATQQDANASSLLDIYSFWLNR
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KSD SAKVPERKLQANGPVAKKAKKKASSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SAKVPERKLQANGPVAKKAKKKASSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKA
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KSD AAKASESSSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AAKASESSSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEP
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KSD PKNQKPKITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 PKNQKPKITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATP
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KSD KKVWTITSVRAETVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPY
       ::          ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 KK----------TVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPY
                        250       260       270       280       290

     300       310       320       330       340       350         
pF1KSD SSVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKPPTKAVVSKAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SSVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKPPTKAVVSKAT
              300       310       320       330       340       350

     360       370       380       390       400       410         
pF1KSD TKPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 TKPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQP
              360       370       380       390       400       410

     420       430       440       450       460       470         
pF1KSD VGGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALPLPAKQAPQGSRDS
       :::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
CCDS65 VGGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALSLPAKQAPQGSRDS
              420       430       440       450       460       470

     480       490       500       510       520       530         
pF1KSD SSDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SSDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEE
              480       490       500       510       520       530

     540       550       560       570       580       590         
pF1KSD EEKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEEKKKAAVVVSKSGSLKKRKQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EEKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEEKKKAAVVVSKSGSLKKRKQN
              540       550       560       570       580       590

     600       610       620       630       640       650         
pF1KSD EAAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIEVDSRVADNSFDAKRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EAAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIEVDSRVADNSFDAKRG
              600       610       620       630       640       650

     660       670       680       690       700         
pF1KSD AAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFDSE
              660       670       680       690       700




709 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:31:29 2016 done: Wed Nov  2 23:31:29 2016
 Total Scan time:  4.010 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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