GENSCAN 1.0	Date run:  2-Nov-116	Time: 23:12:44

Sequence gi568815579f:9735345_9949196 : 213852 bp : 49.37% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    782    824   43  1  1   74  100    40 0.312   4.38
 1.02 Intr +   8142   8365  224  1  2   96   88    55 0.449   4.15
 1.03 Term +   8518   8958  441  0  0   34   44   212 0.772   6.66
 1.04 PlyA +  11110  11115    6                               1.05

 2.11 PlyA -  13187  13182    6                               1.05
 2.10 Term -  23420  22131 1290  2  0   74   45   752 0.998  61.10
 2.09 Intr -  24598  24516   83  2  2   76   91    55 0.994   3.96
 2.08 Intr -  26824  26738   87  2  0   93   96     8 0.704   2.04
 2.07 Intr -  28064  27938  127  2  1   -1   66   136 0.869   2.75
 2.06 Intr -  33023  32945   79  1  1   84  105    15 0.789   2.35
 2.05 Intr -  33644  33391  254  2  2   36  -14   228 0.403   3.63
 2.04 Intr -  50735  50582  154  1  1   68   80   114 0.667   8.67
 2.03 Intr -  58061  57532  530  2  2   17   85   172 0.018   1.53
 2.02 Intr -  61589  61479  111  2  0   97   64    78 0.435   6.88
 2.01 Init -  67985  67938   48  2  0  106   57   -15 0.148  -1.84
 2.00 Prom -  69106  69067   40                              -3.16

 3.04 PlyA -  69533  69528    6                               1.05
 3.03 Term -  76373  75552  822  2  0  113   36   866 0.976  76.99
 3.02 Intr -  83273  83201   73  1  1  114   88   112 0.999  13.21
 3.01 Init -  83469  83384   86  0  2  103   80   160 0.999  15.05
 3.00 Prom -  84516  84477   40                              -8.86

 4.00 Prom +  84645  84684   40                              -1.66
 4.01 Sngl +  84875  85114  240  1  0   59   55   465 0.998  35.38
 4.02 PlyA +  85153  85158    6                               1.05

 5.00 Prom +  85209  85248   40                              -7.16
 5.01 Init +  91486  91522   37  0  1   49   80     5 0.472  -4.02
 5.02 Intr +  91952  92088  137  0  2   80   83    90 0.508   7.99
 5.03 Term +  92193  92327  135  2  0   85   43   100 0.378   3.22
 5.04 PlyA +  94486  94491    6                               1.05

 6.00 Prom +  95215  95254   40                              -4.16
 6.01 Init + 100001 100058   58  1  1  101   55    96 0.984   9.07
 6.02 Intr + 103092 103304  213  1  0  105  101   395 0.816  41.19
 6.03 Intr + 110466 110591  126  1  0   31   80   122 0.621   6.35
 6.04 Intr + 112686 112796  111  1  0  111   69   151 0.987  15.85
 6.05 Term + 113746 113855  110  2  2  124   55   230 0.962  21.97
 6.06 PlyA + 114981 114986    6                               1.05

 7.09 PlyA - 116560 116555    6                               1.05
 7.08 Term - 119519 118842  678  2  0   58   52  1242 0.999 111.29
 7.07 Intr - 121569 121463  107  1  2  114  100   155 0.999  19.23
 7.06 Intr - 122138 121919  220  2  1   41   59   386 0.997  28.87
 7.05 Intr - 122517 122371  147  0  0   75   94   231 0.975  22.83
 7.04 Intr - 125450 125301  150  2  0   86  100   155 0.505  16.86
 7.03 Intr - 128063 128035   29  0  2  119   80    22 0.247   2.33
 7.02 Intr - 133830 133731  100  0  1   87    7   108 0.010   2.28
 7.01 Init - 178273 178139  135  1  0   88   78   318 0.979  30.94
 7.00 Prom - 189583 189544   40                              -3.96

 8.03 PlyA - 190848 190843    6                               1.05
 8.02 Term - 194864 194760  105  2  0   84   42    19 0.101  -4.69
 8.01 Init - 201022 200960   63  1  0   68   91   211 0.950  18.55

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  51201  51185   17  0  2  100   93    17 0.910   1.96
S.002 Term - 133830 133723  108  0  0   87   49   119 0.951   6.41
S.003 Term - 148224 148154   71  1  2   62   42   109 0.897   1.80
S.004 Init - 152216 152171   46  2  1   88  116    34 0.817   7.04


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579f:9735345_9949196|GENSCAN_predicted_peptide_1|235_aa
MGQGHGPTLEDQEEDKQERVYFLAQSYTDTHWLHEPGLQEGTRAVAREYPHWQYQTDSPG
IARRDYMVSCLVEGLKKAAYSAVNYDNLKKKSPNLDSGPQTPQQDLINLTFKVFNNREEL
AKQQRISELQLLASTVRQPTTSPAYKTFRTTKTQLPGAPSKPPGGPCFKCQKPGHWASES
PQPGFPPKPCPLSVGPHWKLDCPTHIATIPKAPGARTQLSLADSFPDLLDLVAED

>gi568815579f:9735345_9949196|GENSCAN_predicted_CDS_1|708_bp
atgggccaggggcacgggcccacgctagaggaccaggaggaagacaaacaagaaagagtt
tattttctagcccagtcctacacagacacccactggcttcatgagccaggcctccaagag
ggcaccagggctgttgcccgagagtatccccattggcaataccagacagactccccaggt
atagctaggcgagattacatggtctcctgcctagtcgaggggctgaaaaaggcagcatac
agcgctgttaattatgacaacctaaagaaaaaatctccaaatttggattctggccctcaa
accccacaacaggatttaatcaatctcaccttcaaggtgttcaataacagagaagaactg
gccaaacagcaacgtatctctgagttacagctacttgcctccactgtaagacaacccaca
acatctccagcatacaaaaccttcagaacaaccaagacacagctcccaggggctccttca
aaacctcctggtggaccttgcttcaaatgccaaaagcctggtcactgggcctcggaaagc
ccgcagcccgggtttcctcctaagccatgccctctctctgtgggcccccactggaagttg
gactgtccgactcacatcgccaccattcctaaagctcctggagctcgaacccaactttcc
ttggcagactccttcccagatctcctcgacttagtggctgaagactga

>gi568815579f:9735345_9949196|GENSCAN_predicted_peptide_2|920_aa
MAGDTALRRPGEHVPKTLEFNVFSGNQHGRSEQSLLKHKDISYLIPHNHMIEGRKTLTYK
NANKVVKRDVSVIYCRITNHQETAHPRTSRMNAEESEQRHFEVPPNRLPPSWSRPHPKPP
PGSAPTVPSEAGGTGSNRCRLRGNWDFSPGSWRTRPPTLPPPHASETGSRALSRFRAPRG
ESEVRVIRAAPPSQEPQLNQRFPLHQPLRPGGASGAASPRGGRKTRAGTRPPRPGPEPSV
PSETLERNQKCAWPQRRLLPFSRRWPNGFPSSSLCDQVRLQSPPPTRPLALGFLVRRRSQ
YRQIDLDPGPPGMRENGTFLYACRRGGPSSSLSFTSSSFQSSWGSAPTLNAVRNRKRKCQ
PARSYTRKSISAVVEKGPSVLLSPTGRLQCVPHLVTFEDVAVDFTQEEWTLLDQAQRDLY
RDVMLENYKNLIILAGSELFKRSLMSGLEQMEELRTGVTGVLQELDLQLKTKGSPLLQDI
SAERSPNGVQLERSNTAEKLYDSNHSGKVFNEHPFLMTHMITHIGEKTSEDNQSGKALRK
NFPHSFYKKSHAEGKMPKCVKHEKAFNQFPNLTRQNKTHTQEKLCECKDCWRTFLNQSSL
KLHIRSHNGDKHYVCKECGKAFSNSSHLIGHGRIHSGEKPYVCKECGKAFTQSTGLKLHI
RTHSGEKPYKCKECGKAFTHSSYLTDHTRIHSGKKPYVCMECGKAFTRSTGLILHMRIHT
GEKPYECKECGKAFIHSSYLTKHVRIHSGEKLYLCKACGKAFTRSSGLVLHMRTHTGEKP
YECKECGKAFNNSSMLSQHVRIHTGEKPYECKECGKAFTQSSGLSTHLRTHTGEKACECK
ECGKAFARSTNLNMHMRTHTGEKPYACKECGKAFRYSTYLNVHTRTHTGAKPYECKKCGK
NFTQSSALAKHLRTKACEKT

>gi568815579f:9735345_9949196|GENSCAN_predicted_CDS_2|2763_bp
atggccggtgatacagccctcaggaggccaggagaacatgtgcccaagactctagagttt
aacgtcttcagtgggaatcagcatggacgttcagaacagtccctccttaaacacaaagac
atttcctacctcatacctcataatcacatgatagaagggaggaagaccctgacctataaa
aacgcaaacaaagtagtgaagagagatgtatcagttatctactgccgtataacaaaccac
caggaaacagcgcatcctcgtacaagccgcatgaatgcagaggaaagcgagcagaggcat
ttcgaggtcccgcccaacagactccctccatcgtggtcccgcccccaccccaagccgccg
ccgggttctgcccccacggtgcccagtgaagccggagggacggggtccaaccgttgtcgg
ctgcgcggaaactgggacttctccccagggtcgtggaggacgcggccgccgaccctccca
ccgcctcacgcctcggagaccgggtccagagccctcagccgcttccgagccccgagaggg
gaatcagaagtgcgcgtgatcagagcggcacccccttcccaggaaccgcagctgaaccaa
cggtttcccctgcaccagcctttgcgaccaggtggggcttcaggtgcggcttcgccacgt
ggaggcaggaagacccgggcagggactcggcctccgaggccgggtccagagccctcagtt
ccttctgaaaccctggagcggaatcagaagtgcgcgtggccacagcggcgcctcctgccc
tttagccgccgctggcccaacggtttccccagcagtagcctctgcgaccaggtgcggctt
cagtccccgcctccaacccggcccttggcgctgggtttcctggtccggcgtcgttcccaa
tatcgacagattgatctggatcctggtccacctgggatgcgagaaaacgggacttttctg
tacgcgtgtcgaagaggtggccccagctcttctctcagcttcacatcatcctcattccaa
agctcttggggctcggcccctacacttaatgccgtgcgcaaccggaagcggaagtgccag
ccggcgcgcagctatacaaggaaaagcatctcagctgttgtggaaaagggccccagcgtc
ctcttgtcaccgacagggcgattgcagtgcgttccgcacttagtgacctttgaggatgtg
gctgtggactttacccaggaggagtggactttgttggatcaagcccagagagatctctac
agagatgtgatgttggagaactacaagaatctcattatactagcagggtctgaattattc
aaacgtagtctcatgtctggattggaacaaatggaagagctgaggacaggagtgacagga
gttctgcaggaattggatttgcaactcaaaaccaaaggctccccactgctgcaagatatt
tctgcagaaagatcaccaaatggagtacaattggagagaagcaatactgcagagaaactg
tatgactctaaccattctggaaaagtcttcaatgaacacccatttcttatgactcacatg
ataactcacattggagagaaaacttctgaggataatcagagtggaaaagccttaagaaag
aactttcctcatagtttttacaagaaaagtcatgctgaggggaaaatgcctaagtgtgtt
aaacatgaaaaagccttcaaccagtttccaaatcttactaggcagaataaaactcacaca
caagagaaattgtgtgaatgcaaagactgttggagaacttttcttaatcagtcatccctt
aagttacatataagatctcacaatggagacaaacactatgtatgtaaggaatgtgggaaa
gccttcagtaattcctcacaccttataggacatggaagaattcacagtggagagaagccc
tatgtctgtaaagaatgtggtaaagctttcactcaatccacaggacttaaattacacatc
agaactcacagtggagaaaaaccatataaatgtaaagagtgtgggaaagccttcacccat
tcttcataccttactgatcatacaagaatccacagtggaaagaagccctatgtatgtatg
gaatgtggaaaagccttcactagatccacaggacttattttacacatgcgaattcacact
ggagaaaagccatatgaatgtaaggagtgtggaaaagcttttattcattcctcatacctt
acaaaacatgtaaggattcacagtggagagaagctgtatttatgtaaggcatgtgggaaa
gcttttactcgttcctcaggacttgttttacacatgagaacacatactggagaaaagccc
tatgaatgtaaagaatgtgggaaagcctttaataattcctcaatgcttagtcaacatgta
aggattcacactggagagaagccatatgaatgcaaagaatgtgggaaagctttcactcaa
tcctcgggccttagtacccatttaagaactcacactggagaaaaggcctgtgaatgtaag
gaatgcggtaaagcatttgctcgttccacaaatcttaatatgcacatgcgaacgcacaca
ggagaaaagccttatgcatgtaaagaatgtgggaaagccttcaggtattccacatacctt
aacgttcacacacgaactcacactggagcaaaaccatatgaatgtaagaaatgtgggaaa
aacttcactcaatcttcagcacttgctaaacatctaagaactaaggcatgtgaaaaaacc
tga

>gi568815579f:9735345_9949196|GENSCAN_predicted_peptide_3|326_aa
MATLVELPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMW
HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPIT
SLPSTLRTLELHSCEISMAWLHKQQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS
LVLGGTYRVTETGLDAGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL
SAPGLAVLEGMPALESLCLQGPLVTPEMPSPTEILSSCLTMPKLRVLELQGLGWEGQEAE
KILCKGLPHCMVIVRACPKESMDWWM

>gi568815579f:9735345_9949196|GENSCAN_predicted_CDS_3|981_bp
atggcgactttggtcgaactgccggactcggtcctgctcgagatcttctcttacctcccg
gtacgggaccggatccgcatctccagggtctgtcaccgctggaagaggctggtggacgac
cggtggctgtggcgacatgtcgacctgacgctctacacgatgcgacctaaagtcatgtgg
cacctccttcgaaggtacatggcatcccggctccattccctgcggatgggtggctacctg
ttctctggctcccaggccccccagttgtcccctgctctgttgagagccctgggccagaag
tgccccaacctgaagcgcctctgcctgcacgtggccgacctgagcatggtgcccatcacc
agcctgcccagcaccttgaggaccctggagctgcacagctgcgagatctccatggcctgg
ctccacaagcagcaggaccccaccgtgctgcccctgcttgaatgcatcgtgctggaccgc
gtccccgccttccgtgacgagcacctgcagggcctgacgcgcttccgggccttgcgctcg
ctggtgctgggtggtacctaccgtgtgaccgagacagggctggatgctggcctgcaggag
ctcagctatctgcagaggcttgaggtgctgggctgcaccctgtctgccgacagcaccctg
ctggccatcagccgccacctccgagatgtgcgcaagatccggctgaccgtgaggggcctc
tctgcccctggcctggctgtgctggagggaatgccggccctggagagtctgtgcctgcag
ggtcccctcgtcaccccagaaatgccctcccccactgaaatcctctcctcctgcctcact
atgcccaagctcagagtccttgagctgcaggggctggggtgggagggtcaggaggcggag
aagatcctgtgtaaggggctgccccactgtatggtcatcgtcagggcttgccccaaagag
tctatggactggtggatgtaa

>gi568815579f:9735345_9949196|GENSCAN_predicted_peptide_4|79_aa
MSIRTKLQNKEHAIEALRRAKFKFPGRQKIYISKKWGFTKFNADEFEDMVAEKRLIPDGC
GVKYIPNRGPLDKWLALHS

>gi568815579f:9735345_9949196|GENSCAN_predicted_CDS_4|240_bp
atgtccatccgcaccaagctgcagaacaaggagcatgcgattgaggccttgcgcagggcc
aagttcaagtttcctggccgccagaagatctacatctcaaagaagtggggcttcaccaag
ttcaatgctgatgaatttgaagacatggtggctgagaagcggctcatcccagatggctgt
ggggtcaagtacatccccaatcgtggccctctggacaagtggctggccctgcactcatga

>gi568815579f:9735345_9949196|GENSCAN_predicted_peptide_5|102_aa
MNGGGSQAHRGQRHQEPGTVRHHAVTAAVGQRRVYSRIKLRLLTGVRIPGERDGQREELP
LQEASGSGSGAYPYSRDPLASPPCDRVSLQQTMTSNELGAGA

>gi568815579f:9735345_9949196|GENSCAN_predicted_CDS_5|309_bp
atgaatggaggcggctctcaagcacacaggggccaaagacaccaagagcctggaactgtc
cggcaccatgcggtaacagcagctgttgggcagcgtagagtctactctaggatcaagctt
cgcctactgactggagtccgtatcccgggggaacgcgatggccagagggaagagttgccg
ctgcaagaggcttcgggctcaggatcaggagcttacccctactcccgggaccctctggcg
tccccaccatgtgaccgagtctccctgcaacaaacaatgacttcaaacgagctgggcgcc
ggcgcctga

>gi568815579f:9735345_9949196|GENSCAN_predicted_peptide_6|205_aa
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL
LVKHSQSRRPSSWRQEKITRTKEEALELINGIPVAVSPALAAGGCGKVMLVQGLGLAPQT
LSACRQSCFPEVGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDAS
FALRTGEMSGPVFTDSGIHIILRTE

>gi568815579f:9735345_9949196|GENSCAN_predicted_CDS_6|618_bp
atggcggacgaggagaagctgccgcccggctgggagaagcgcatgagccgcagctcaggc
cgagtgtactacttcaaccacatcactaacgccagccagtgggagcggcccagcggcaac
agcagcagtggtggcaaaaacgggcagggggagcctgccagggtccgctgctcgcacctg
ctggtgaagcacagccagtcacggcggccctcgtcctggcggcaggagaagatcacccgg
accaaggaggaggccctggagctgatcaacgggatccctgtggctgtgtccccagccctg
gccgctgggggctgtggcaaggtgatgcttgttcagggcctgggcctggctcctcagacg
ctcagtgcctgcaggcagtcctgcttccccgaagtaggctacatccagaagatcaagtcg
ggagaggaggactttgagtctctggcctcacagttcagcgactgcagctcagccaaggcc
aggggagacctgggtgccttcagcagaggtcagatgcagaagccatttgaagacgcctcg
tttgcgctgcggacgggggagatgagcgggcccgtgttcacggattccggcatccacatc
atcctccgcactgagtga

>gi568815579f:9735345_9949196|GENSCAN_predicted_peptide_7|521_aa
MSVPLLKIGAVLSTMAMVTNWMSQTLPSLVGLNGTVSRAGASEKIDTENRINDQLSLSEL
AAKELGAKLMARPYADCSEQPEVTVNTQTLFQNPEEGWQLYTSAQAPDGKCICTAVIPAQ
STCSRDGRSRELRQLMEKVQNVSQSMEVLELRTYRDLQYVRGMETLMRSLDARLRAADGS
LSAKSFQELKDRMTELLPLSSVLEQYKADTRTIVRLREEVRNLSGSLAAIQEEMGAYGYE
DLQQRVMALEARLHACAQKLGCGKLTGVSNPITVRAMGSRFGSWMTDTMAPSADSRVWYM
DGYYKGRRVLEFRTLGDFIKGQNFIQHLLPQPWAGTGHVVYNGSLFYNKYQSNVVVKYHF
RSRSVLVQRSLPGAGYNNTFPYSWGGFSDMDFMVDESGLWAVYTTNQNAGNIVVSRLDPH
TLEVMRSWDTGYPKRSAGEAFMICGVLYVTNSHLAGAKVYFAYFTNTSSYEYTDVPFHNQ
YSHISMLDYNPRERALYTWNNGHQVLYNVTLFHVISTSGDP

>gi568815579f:9735345_9949196|GENSCAN_predicted_CDS_7|1566_bp
atgtcggtgccgctgctcaagatcggggccgtgctgagcaccatggccatggtcaccaac
tggatgtcgcagacgctgccctcgctcgtggggctcaacggcaccgtgtcccgtgcgggc
gcctctgagaaaatcgacactgagaaccgcataaatgaccagctttccctttctgagttg
gctgctaaggagcttggagccaaacttatggcccggccatatgctgattgttcagagcag
ccagaggtcactgtgaacacccaaactctcttccagaacccagaagagggctggcagctg
tacacctcagcccaggcccctgacgggaaatgcatctgcacggccgtgatcccagcgcag
agtacctgctctcgagatggcaggagtcgggagctgcggcaactgatggagaaggtccag
aacgtctcccagtccatggaggtccttgagttgcggacgtatcgcgacctccagtatgta
cgcggcatggagaccctcatgcggagcctggatgcgcggctccgggcagctgatgggtcc
ctctcggccaagagcttccaggagctgaaggacaggatgacggaactgttgcccctgagc
tcggtcctggagcagtacaaggcagacacgcggaccattgtacgcttgcgggaggaggtg
aggaatctctccggcagtctggcggccattcaggaggagatgggtgcctacgggtatgag
gacctgcagcaacgggtgatggccctggaggcccggctccacgcctgcgcccagaagctg
ggctgtgggaagctgaccggggtcagtaaccccatcaccgttcgggccatggggtcccgc
ttcggctcctggatgactgacacgatggcccccagtgcggatagccgggtctggtacatg
gatggctattacaaaggccgccgggtcctggagttccgtaccctgggagacttcatcaaa
ggccagaactttatccagcacctgctgccccagccgtgggcgggcacgggccacgtggtg
tacaacggctccctgttctataacaagtaccagagcaacgtggtggtcaaataccacttc
cgctcgcgctctgtgctggtgcagaggagcctcccgggcgccggttacaacaacaccttc
ccctactcctggggcggcttctccgacatggacttcatggtggacgagagcgggctctgg
gctgtgtacaccaccaaccagaacgcgggcaacatcgtggtcagccggctggacccgcac
accctcgaggtcatgcggtcctgggacaccggctaccccaagcgcagcgctggcgaggcc
ttcatgatctgcggtgtgctctacgtgaccaactcccacctggctggggccaaggtctac
ttcgcctattttaccaacacgtccagttacgagtacacggacgtgcccttccacaaccag
tattcccacatctcgatgctggattacaacccccgggagcgcgccctctatacctggaac
aacggccaccaggtgctctacaatgtcaccctgtttcacgtcatcagcacctctggggac
ccctga

>gi568815579f:9735345_9949196|GENSCAN_predicted_peptide_8|55_aa
MWPLTVPPPLLLLLCSGLAGQACVCGVMRVCVCLVTVCMFRDHEHRDMLVSSSHQ

>gi568815579f:9735345_9949196|GENSCAN_predicted_CDS_8|168_bp
atgtggccgctcacggtcccgccgccgctgctgctgctgctgtgctcaggcctggccgga
caggcatgtgtctgtggtgtcatgcgtgtatgtgtatgtttggtgactgtgtgcatgttc
agggaccatgagcacagggacatgcttgtatcatcatcacaccagtga