Result of FASTA (ccds) for pF1KB4393
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4393, 1390 aa
  1>>>pF1KB4393 1390 - 1390 aa - 1390 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9974+/-0.0012; mu= 14.4291+/- 0.072
 mean_var=78.3007+/-16.339, 0's: 0 Z-trim(102.4): 14  B-trim: 390 in 1/47
 Lambda= 0.144941
 statistics sampled from 6946 (6950) to 6946 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.556), E-opt: 0.2 (0.213), width:  16
 Scan time:  4.070

The best scores are:                                      opt bits E(32554)
CCDS7354.1 POLR3A gene_id:11128|Hs108|chr10        (1390) 9194 1932.9       0
CCDS42706.1 POLR1A gene_id:25885|Hs108|chr2        (1720)  485 111.7 1.8e-23


>>CCDS7354.1 POLR3A gene_id:11128|Hs108|chr10             (1390 aa)
 initn: 9194 init1: 9194 opt: 9194  Z-score: 10378.6  bits: 1932.9 E(32554):    0
Smith-Waterman score: 9194; 100.0% identity (100.0% similar) in 1390 aa overlap (1-1390:1-1390)

               10        20        30        40        50        60
pF1KB4 MVKEQFRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MVKEQFRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 GTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 EKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 TNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 NPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 VDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 IQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 AIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQI
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB4 FSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGTLGSGSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGTLGSGSK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB4 NNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB4 YKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTM
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB4 ALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYS
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB4 GLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQF
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB4 IYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKKSEFLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKKSEFLC
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB4 CQDSFLQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 CQDSFLQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRD
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB4 KYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAI
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KB4 STPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 STPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLL
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KB4 RLEVNAETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RLEVNAETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVV
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KB4 VQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGI
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KB4 EAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLAS
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KB4 FEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPNPPKRPLIFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPNPPKRPLIFD
             1330      1340      1350      1360      1370      1380

             1390
pF1KB4 TNEFHIPLVT
       ::::::::::
CCDS73 TNEFHIPLVT
             1390

>>CCDS42706.1 POLR1A gene_id:25885|Hs108|chr2             (1720 aa)
 initn: 1527 init1: 459 opt: 485  Z-score: 534.9  bits: 111.7 E(32554): 1.8e-23
Smith-Waterman score: 1421; 33.6% identity (59.0% similar) in 921 aa overlap (310-1118:391-1298)

     280       290       300       310       320       330         
pF1KB4 TMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTR
                                     :  :: .  . ..::.. . ..  :     
CCDS42 DEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYP-----
              370       380       390       400       410          

     340       350       360       370       380       390         
pF1KB4 GFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKA
       :. : :. :.: :: .. :::::...:.:: ::  .  .:...:.  :  ::.:. :.  
CCDS42 GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPW
         420       430       440       450       460       470     

     400       410       420       430         440                 
pF1KB4 NINFLRKLVQNGPEVHPGANFIQQRHTQMKRF--LKYGNREKMAQEL----------KYG
       :.. ::. : :::.:::::... ..  .   .  . . .:: .:..:          .  
CCDS42 NVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGT
         480       490       500       510       520       530     

       450       460       470       480        490       500      
pF1KB4 DIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPH-RTFRFNECVCTPYNADFDGDEMN
        :: ::. .::..:.::::.::. ::.:: ::. :. ...:..   :  :::::::::::
CCDS42 KIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN
         540       550       560       570       580       590     

        510       520       530       540       550       560      
pF1KB4 LHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQ
        :.::.: ..::: ::  :  . ..:..:.:: . ::: ....  .: .  :: : .  .
CCDS42 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYME
         600       610       620       630       640       650     

        570       580       590       600          610       620   
pF1KB4 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR---PSDDNPVRANLRTK--G
       ..   :.  :.  .:.:  :.::::  ::::::. :..:    : :  :.  . ..:  :
CCDS42 LVYRGLT--DKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITG
         660         670       680       690       700       710   

                     630        640       650       660       670  
pF1KB4 KQYC--------GKGED-LCANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWG
       : .         : . : .:  .: : :...::. : .::.  :: :  .. .   . .:
CCDS42 KAWVKETPRSVPGFNPDSMC--ESQVIIREGELLCGVLDKAHYGS-SAYGLVHCCYEIYG
           720       730         740       750        760       770

            680       690        700         710         720       
pF1KB4 QNEAADAMSRLARLAPVYLS-NRGFSIGIGD--VTPGQGLLKAKY--ELLNAGYKKCDEY
        . .. ... ::::  .::.  :::..:. :  : :   . . .   :  . : .     
CCDS42 GETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAA
              780       790       800       810       820       830

          730           740       750          760            770  
pF1KB4 I---EALN----TGKLQQQPGCTAEETLEALILK---ELSVIRDHAGSACL-----RELD
       .   :: .     :: :.      .. .. . ::   :..   .. ..::.     :.. 
CCDS42 LNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFP
              840       850       860       870       880       890

            780       790       800       810       820       830  
pF1KB4 KSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKG
       . ::   :.  :.::: .:  :.   .::  . : : :    ..::: :: .   : : :
CCDS42 E-NSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGG
               900       910       920       930       940         

            840       850       860       870       880       890  
pF1KB4 FVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRS
       ::.. : .:. : ::::: ::::::::::::::...::.:: ..: :: :  :::::::.
CCDS42 FVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRD
     950       960       970       980       990      1000         

            900       910       920       930                 940  
pF1KB4 STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCP--------SEP--ALSK
       : :...::.:: ::::    .   .: .:  . .: ....           ..:  :: .
CCDS42 SDGSVVQFLYGEDGLDIPKTQFL-QPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHH
    1010      1020      1030       1040      1050      1060        

            950            960       970                  980      
pF1KB4 NELILTTES-----IMKKSEFLCCQDSFLQEIKKFIK-----------GVSEKIK-----
        . :   .:     ..... ::  ... .::  : .:           :..: ..     
CCDS42 FRAIKKWQSKHPNTLLRRGAFLSYSQK-IQEAVKALKLESENRNGRSPGTQEMLRMWYEL
     1070      1080      1090       1100      1110      1120       

               990            1000                   1010          
pF1KB4 --KTRDKYGINDNGTTEPRV------LY----------QLDRITP---TQVEKFLETCR-
         ..: ::  .  .  .: .      .:          ..:  .    .:.::  :  . 
CCDS42 DEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKSEL
      1130      1140      1150      1160      1170      1180       

      1020              1030      1040      1050      1060         
pF1KB4 --D--------KYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPR
         :        :..:.  ::: ::: : :::::::.:::::.:::::: . ::.:::.::
CCDS42 SLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPR
      1190      1200      1210      1220      1230      1240       

    1070       1080       1090      1100      1110      1120       
pF1KB4 IKEIIN-ASKAISTPIITAQ-LDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCF
       ..::.  ::  :.::....  :.       .. .: .. .. :::. . :.         
CCDS42 LREILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEE
      1250      1260      1270      1280      1290      1300       

      1130      1140      1150      1160      1170      1180       
pF1KB4 ILVKLSLERIRLLRLEVNAETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSSMYY
                                                                   
CCDS42 KQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKKNNKASAFRNV
      1310      1320      1330      1340      1350      1360       




1390 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:53:40 2016 done: Wed Nov  2 22:53:41 2016
 Total Scan time:  4.070 Total Display time:  0.110

Function used was FASTA [36.3.4 Apr, 2011]
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