GENSCAN 1.0	Date run:  2-Nov-116	Time: 22:09:08

Sequence gi568815586f:118881883_119256698 : 374816 bp : 43.66% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA -    976    971    6                               1.05
 1.03 Term -   7517   7271  247  1  1   65   36   193 0.808   7.06
 1.02 Intr -   9599   9507   93  1  0   80  115    31 0.223   4.08
 1.01 Init -  22865  22462  404  2  2   60   39   175 0.122   5.90
 1.00 Prom -  25974  25935   40                              -2.56

 2.00 Prom +  34701  34740   40                              -3.26
 2.01 Init +  35073  35125   53  2  2   75   80    26 0.286   1.13
 2.02 Intr +  38316  38365   50  0  2  119   84    43 0.653   5.32
 2.03 Intr +  69277  69484  208  2  1   51   86    88 0.117   3.04
 2.04 Intr +  70554  70575   22  0  1  111   83    -5 0.070  -1.15
 2.05 Intr +  99956 100131  176  1  2   31   90   224 0.222  15.64
 2.06 Intr + 108843 108879   37  0  1   74   77     6 0.047  -3.64
 2.07 Intr + 110464 110551   88  0  1   82   99    57 0.132   5.74
 2.08 Term + 123068 123180  113  0  2   70   41   104 0.325   2.62
 2.09 PlyA + 123185 123190    6                               1.05

 3.04 PlyA - 125595 125590    6                               1.05
 3.03 Term - 144250 144067  184  0  1   96   45   115 0.837   5.02
 3.02 Intr - 148009 147812  198  0  0   33   70   126 0.633   3.77
 3.01 Init - 170368 170304   65  1  2   46   64    54 0.065  -0.58
 3.00 Prom - 172736 172697   40                              -0.76

 4.04 PlyA - 173640 173635    6                               1.05
 4.03 Term - 194321 193428  894  2  0   -3   34  2689 0.997 246.81
 4.02 Intr - 197781 197716   66  0  0  106   66    32 0.737   1.90
 4.01 Init - 211258 211193   66  1  0   77  100    54 0.418   6.57
 4.00 Prom - 223422 223383   40                              -2.46

 5.02 PlyA - 223706 223701    6                              -0.45
 5.01 Sngl - 224711 224226  486  2  0   60   39   210 0.931   9.37
 5.00 Prom - 226641 226602   40                              -5.26

 6.00 Prom + 231799 231838   40                              -3.46
 6.01 Init + 232261 232268    8  0  2   85   40     0 0.574  -4.64
 6.02 Intr + 232396 232482   87  1  0  109   94    85 0.977  10.29
 6.03 Intr + 235055 235126   72  2  0   93   72    80 0.754   5.42
 6.04 Intr + 237823 238029  207  1  0  -35   82   160 0.420   1.29
 6.05 Intr + 238368 238394   27  0  0  142  110    13 0.786   6.13
 6.06 Intr + 243499 243597   99  1  0  111   91    32 0.716   5.03
 6.07 Intr + 248796 248952  157  0  1   98   86    52 0.158   6.01
 6.08 Intr + 263409 263803  395  2  2  133   86   151 0.167  12.85
 6.09 Intr + 269135 269338  204  2  0   84  113    61 0.046   6.52
 6.10 Intr + 271678 271767   90  1  0   90   86    43 0.046   3.41
 6.11 Intr + 272361 272501  141  0  0  106   94   123 0.997  14.17
 6.12 Term + 274613 274916  304  2  1  128   42   239 0.994  17.94
 6.13 PlyA + 276290 276295    6                               1.05

 7.00 Prom + 285532 285571   40                              -4.26
 7.01 Init + 297431 297797  367  1  1  121  119   166 0.970  20.19
 7.02 Intr + 305143 305206   64  2  1  123  100    68 0.835   9.28
 7.03 Term + 311817 311976  160  0  1   76   50   142 0.720   6.61
 7.04 PlyA + 312261 312266    6                              -3.44

 8.00 Prom + 312503 312542   40                              -5.76
 8.01 Init + 312968 313680  713  1  2   97   -2   576 0.469  43.88
 8.02 Term + 319307 319313    7  2  1  111   47     0 0.050  -4.46
 8.03 PlyA + 319674 319679    6                               1.05

 9.04 PlyA - 319687 319682    6                               1.05
 9.03 Term - 320058 319880  179  1  2   82   37    97 0.047   1.85
 9.02 Intr - 342933 342861   73  0  1   97   64    37 0.147   1.18
 9.01 Init - 350123 349980  144  2  0   73   94   114 0.376  10.62

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 268848 268895   48  2  0   91   80    30 0.865   3.47
S.002 Intr + 269135 269302  168  1  0   84   86   133 0.940  12.84


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:118881883_119256698|GENSCAN_predicted_peptide_1|247_aa
MSELPFTIATRRIKHLGIQLTRDVKDLFKKNYKPLLNEIKKDTNKWKNIPCSWIGRINIM
KMAILPKVIYRFNAIPIKLPKIFFTALEKTTLKFVWNQKRACIAKIILSKKNKAGDITLP
DFKLYYKATVTKTACLPYGSVSYVWRTHVCLFADVSLVLRRGLGIWVGRPKALSNDAAND
HNNNDGTKDSVHEFVSYYMPRIKNSIQTYFSQPGQPNQSEWMLAANNQHSYTNAYQLNIS
PAWHICQ

>gi568815586f:118881883_119256698|GENSCAN_predicted_CDS_1|744_bp
atgagtgaactcccattcacaattgctacaaggagaataaaacacctaggaatacaactt
acaagagatgtgaaggacctcttcaagaagaattacaaaccactgctcaatgaaataaag
aaggacacaaacaagtggaagaatattccatgctcatggataggaagaatcaatatcatg
aaaatggccatactgcccaaggtaatttatagattcaatgccattcccatcaagctacca
aagattttcttcacagcattggagaaaactactttaaagttcgtatggaaccaaaaaaga
gcctgcattgccaagataatcctaagcaaaaagaacaaggctggagacatcacgctacct
gacttcaaactatactacaaggctacagtaaccaaaacagcatgtcttccctatggaagc
gtaagctatgtatggaggacccatgtctgcttgttcgctgatgtatccctggtgcttaga
agaggacttggaatatgggtggggagaccaaaggcgctcagcaatgatgctgcaaatgat
cataataataatgatggcactaaagacagcgtccacgaatttgtctcttactacatgcca
cgtatcaagaacagtattcaaacatatttttcacaaccaggacaacccaaccagtcagag
tggatgctagctgcaaataaccagcacagctataccaatgcctaccagctgaacatcagt
ccagcatggcatatctgtcaataa

>gi568815586f:118881883_119256698|GENSCAN_predicted_peptide_2|248_aa
MEAHSPTTLRELKEAKCGFCLIMDSETELLTFVALNMDIISVLKTFACFSLVQKSNSWKA
FQNRQMSSKPLEMIFEGAQCQLSTLENSHPHALSTAASARTSVYSSLLDFYHFGQRPGRP
GPFGLAMASVQQGEKQLFEKFWRGTFKAVATPRPESIIVASITARKPLPRPRRTSLKSTS
DHGLLWHLLPTHSSGYPDKMSIRTQPVPSRAGAPNWFTQRRLKQAASSITVPVASDFGVS
DTTKTYLK

>gi568815586f:118881883_119256698|GENSCAN_predicted_CDS_2|747_bp
atggaggcccacagtccaacaaccctcagagaactaaaggaagccaaatgtgggttctgc
ctaataatggattcagaaacagaacttcttacctttgtggcattaaatatggacatcatt
agtgtcctgaagacttttgcctgtttctcattagttcagaagagtaattcttggaaagca
tttcagaacagacagatgagcagcaaacccttggaaatgatttttgagggtgcccagtgc
cagctttctacccttgagaactcccaccctcatgctctgtctactgctgcttctgcaagg
acatcagtgtattcctcattactagatttttaccactttggacagcgccccggacgcccc
ggcccctttgggttggcgatggcgagcgttcagcaaggcgagaagcagctttttgagaag
ttctggcgaggaaccttcaaagcggtggccaccccccgtcccgagagcatcattgtcgcc
agtatcacggcccgcaagccgctgccaagacccagaagaacctctttgaaaagcacatca
gaccatggtctcctgtggcacctgctgcccacccactcgtctgggtatcctgacaagatg
tccatccgcacccagcctgtgcctagcagagcaggggcacccaactggttcacccagaga
agattaaaacaggctgctagcagcatcacagttcctgtggcttcagatttcggtgtttct
gataccacaaaaacctatttgaaataa

>gi568815586f:118881883_119256698|GENSCAN_predicted_peptide_3|148_aa
MGTVHIHESSHSCHGDYSKHSRIRSYQIYLVLSAYCVSDPAMSAFNPRLPLPGGEGDLCD
VILAYSASSITIKTCFITAGRNKRVGEEIKPNPDVVAMRIYRPDLQPQRAPGPPMWSPDL
VEDQTSHRLLPANGSVAVTLRQGHIGLH

>gi568815586f:118881883_119256698|GENSCAN_predicted_CDS_3|447_bp
atgggaacagtccacatccacgagagcagccacagttgccacggtgattattctaaacac
agcagaattcgctcctaccagatttacctggtgctgtctgcctactgtgtctctgaccct
gccatgtctgcatttaatccaaggctcccattacctggaggagaaggggatctgtgtgat
gtgattttggcatattcggcaagttccatcaccatcaaaacatgttttatcactgcagga
agaaacaaacgtgtaggagaagaaataaaaccaaacccagatgtggtggccatgagaatc
taccgcccagatcttcaaccacagagggcaccaggacctccaatgtggagccctgacctt
gtggaagatcaaacctcccacaggttgcttccagccaatggctcggtggccgtgactcta
aggcagggacacataggactccactga

>gi568815586f:118881883_119256698|GENSCAN_predicted_peptide_4|341_aa
MEYYCEGLAILNWVIREALIEKYNSQLSRQSVRPQGKAKCAMRQLSLSSLSLSSSLSSSS
SLFPLSSSSFIVTILITIVIVTIIIIIITITTITIITIIITITTIIIIATITTIISTIIT
ITTTTIIITTIIITITTIIIIITIIATIIITTTIIITTTIINIIIIITITIITVIITIII
TIIAIIITTIITIIITTIIITITTIINITIITIFIITIITIIITIIATIIIIITTIIITI
TTIINIIIIIITIITIIITIIITIIATIITIITTIIITITTIIITISTIIITIITIIITI
IIITVIITIIIIIIIILTIITIIIVIIIIQSRSHADAISSY

>gi568815586f:118881883_119256698|GENSCAN_predicted_CDS_4|1026_bp
atggaatactactgcgaggggcttgcaattttaaactgggtaatcagagaagccctcatt
gagaagtacaactcacaactctcccgacaaagtgtgcgaccacagggcaaggctaagtgt
gcaatgcggcagctgtcattgtcatcactgtcattatcatcatcattgtcatcatcatca
tcattattcccattgtcatcatcatcattcattgtcactatcctcatcaccattgttatc
gtcaccatcattattattatcattaccattactaccatcaccatcatcactatcatcatc
accatcaccaccatcatcatcatcgccaccatcaccaccatcatcagcaccatcatcacc
atcaccaccaccaccatcatcattaccaccatcatcatcaccatcaccaccatcatcatc
atcatcaccatcatcgctaccatcatcatcactactaccatcatcatcaccaccaccatc
atcaacatcatcatcatcatcaccatcaccatcatcaccgttatcatcaccatcatcatc
accatcatcgctatcatcatcaccaccatcatcaccatcatcattaccaccatcatcatc
accatcaccaccatcatcaacatcaccatcatcaccatcttcatcatcaccatcatcacc
atcatcatcaccatcatcgctaccatcatcatcatcattaccactatcatcatcaccatc
accaccatcatcaacatcatcatcatcatcatcaccatcatcaccattatcatcaccatc
atcatcaccatcattgctaccattatcaccatcattaccaccatcatcatcaccatcacc
accatcatcatcaccatcagcaccatcatcatcaccatcatcaccatcatcatcaccatc
atcatcattactgtcatcatcaccatcattatcatcatcatcatcatcctcaccatcatt
accatcataatcgtcatcatcatcatccagtccagatcccatgctgatgcaataagtagt
tattaa

>gi568815586f:118881883_119256698|GENSCAN_predicted_peptide_5|161_aa
MSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWIGRINIM
KMAILPKVIYRFNAIPIKLPMTFSTELEKTTLKFIWNQKRARIAKTILSQKNKTGGITLP
DFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEITHTSTTI

>gi568815586f:118881883_119256698|GENSCAN_predicted_CDS_5|486_bp
atgagtgaactcccattcacaattgcttcaaagagaataaaatatctaggaatccaactt
acaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaa
gaggacacaaacaaatggaagaacattccatgctcatggataggaagaatcaatatcatg
aaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctacca
atgactttttccacagaactggaaaaaactactttaaagttcatatggaaccaaaaaaga
gcccgcattgccaagacaatcctaagccaaaagaacaaaactggaggcatcacgctacct
gacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaac
agagatatagaccaatggaatagaacagagccctcagaaataacacacacgtctacaacc
atttga

>gi568815586f:118881883_119256698|GENSCAN_predicted_peptide_6|596_aa
MRCASHDKDLTPPPSSRGKKKKKKSTRKKRRRSSSYSPSPVKKKKKKSSKKHKRRSKSST
CGSWLSHDDDGDDEDEEEEECTTREREDEMENGGGERQKTLSTFSLSSLIQDRFTDSFGG
GLEHRSFSKKRRHRSRSRPRKSHRHRHHRCPSRSQSSESRPSSCESRHRGRSPEEGQKSR
RRHSRRCSKTLCKDSPEAQSSRPPSQPLQMLGYLSARGVCIMTVNISWLFRNSPWAQRSA
VSNGSFCFQITGSGSAADLFTKTASPLTTSRGRSQEYDSGNDTSSPPSTQTSSARSRGQE
KGSPSGGLSKSRELNSGNTSDSGNSFTTSSPQNKGAMLENLSPTSRGRESRGFQSPCLEC
AEVKKSSLVPSTARSSPMKGCSRSSSYASTRSSSHSSRSPNPRASPRYTQSRSTSSEKSY
SSKSGKRSPPSRSSRSRRSPSYSRYSPSRERDPKYSEKDSQQRERERARRRRRSYSPMRK
RRRDSPSHLEARRITSARKRPIPYYRPSPSSSGSLSSTSSWYSSSSSRSASRSYSRSRSR
SRSRRRSRTRTSSSSSSRSPSPGSRSRSRSRSRSRSRSRSQSRSYSSADSYSSTRR

>gi568815586f:118881883_119256698|GENSCAN_predicted_CDS_6|1791_bp
atgaggtgtgcctctcatgacaaagacttgacaccaccaccttcctccaggggaaagaag
aaaaagaagaaatccactcggaagaagagaaggaggtcctcatcctatagcccatcgcct
gtcaagaaaaagaagaagaaaagttccaagaaacacaagcgacgcagtaagagttccaca
tgtggaagctggctgtctcatgatgatgacggtgatgatgaggatgaggaggaggaggaa
tgcacaacaagggagagagaagatgagatggagaatggaggaggggaaaggcagaagact
ctctctacgttctccttatccagcctcatccaggacagatttactgacagttttggggga
ggattggagcaccggtcattctccaagaagagaaggcacagatctcgaagccggccccga
aagtctcaccgccaccgccatcaccgctgcccctcgcggtcccagagctcggagtcccgc
ccctcaagctgtgagagcaggcaccgcggccggtcccctgaggaagggcagaagtcccgc
cgaaggcactcccgccgctgctccaagaccctctgcaaggacagccctgaggcccagtcc
agtcgcccgcccagtcaacccctccagatgcttggctacctgtcagccaggggtgtatgc
atcatgacggtaaacatttcttggttatttagaaacagcccatgggcccagcgctcagca
gtgtccaacgggtctttttgctttcagatcactgggtcggggtctgctgctgacctcttt
accaaaacagccagcccgctcaccacctcgcgaggacgttcccaggagtacgactcagga
aatgacacgtcctcgccaccctccacgcaaaccagctcagccaggtctcggggccaggag
aaggggagccccagtgggggcttgagcaagagccgggagctcaacagtggcaacacctct
gattcagggaactccttcaccacctcctcaccccagaacaagggggccatgttggagaat
ctctcccccaccagcaggggcagagagtcaaggggatttcagtcaccgtgtctggaatgt
gccgaagtgaagaagtccagtttggtcccatccacagcccggagctcacccatgaaaggg
tgttcccgcagctcctcctatgccagcacccgatcctccagtcactcgtcccgatcccca
aatcccagggcttcccccaggtacacccaaagccgatccacctcttctgaaaaaagctat
tcctccaagtctggcaagaggagcccgcccagcagaagctctaggtcccgccgcagccct
agctactcccgctacagccccagcagggagcgggatcccaaatacagtgagaaggactcg
cagcagcgggagcgcgagcgagcgcgtcggagacgtcggtcctactcgcctatgagaaag
cgccggagagactccccgagccacctggaggcccggaggataaccagtgcccggaaacgc
cccatcccctactatcggcccagcccctcctcatccggcagcctcagcagcacctcctcc
tggtacagcagcagcagtagccgctcggccagccgcagctactcccggagccggagtcgg
agccggagccggagacggagccggacccgcacgagcagcagctctagctcccgcagccct
agtccgggctcccgcagccggagccggagcaggagccggagccggagccggagcaggagc
cagagccggagctacagctcagcagacagctactccagcacgaggcgctaa

>gi568815586f:118881883_119256698|GENSCAN_predicted_peptide_7|196_aa
MADGQMPFSCHYPSRLRRDPFRDSPLSSRLLDDGFGMDPFPDDLTASWPDWALPRLSSAW
PGTLRSGMVPRGPTATARFGVPAEGRTPPPFPGEPWKVCVNVHSFKPEELMVKTKDGYVE
VSGKHEEKQQEGGIVSKNFTKKIQLPAEVDPVTVFASLSPEGLLIIEAPQVPPYSTFGES
SFNNELPQDSQEVTCT

>gi568815586f:118881883_119256698|GENSCAN_predicted_CDS_7|591_bp
atggctgacggtcagatgcccttctcctgccactacccaagccgcctgcgccgagacccc
ttccgggactctcccctctcctctcgcctgctggatgatggctttggcatggaccccttc
ccagacgacttgacagcctcttggcccgactgggctctgcctcgtctctcctccgcctgg
ccaggcaccctaaggtcgggcatggtgccccggggccccactgccaccgccaggtttggg
gtgcctgccgagggcaggacccccccacccttccctggggagccctggaaagtgtgtgtg
aatgtgcacagcttcaagccagaggagttgatggtgaagaccaaagatggatacgtggag
gtgtctggcaaacatgaagagaaacagcaagaaggtggcattgtttctaagaacttcaca
aagaaaatccagcttcctgcagaggtggatcctgtgacagtatttgcctcactttcccca
gagggtctgctgatcatcgaagctccccaggtccctccttactcaacatttggagagagc
agtttcaacaacgagcttccccaggacagccaggaagtcacctgtacctga

>gi568815586f:118881883_119256698|GENSCAN_predicted_peptide_8|239_aa
MPKGGRKGGHKGWARQYRSPEEIDVQLQAEKQKAREEEEQKEGGDGAAGDPKKEKKSLDS
DESEDEEDDYQQNRKGVEGLFNIENPNQVAQTTKKVTQLYLDGPKELSRREREEIEKQKA
KERYMKMHLAGKTEQAKADLARWPSSGNSGRRLPGRRKRKGKQKMMPHCQENECSRSPCI
SNRDPWEEMPGTWAALPGPLLCLAHPVPWRRRNSPSWPGAPHGLGPPLHFGTEIVWGML

>gi568815586f:118881883_119256698|GENSCAN_predicted_CDS_8|720_bp
atgcctaaaggagggagaaagggaggccacaaaggctgggcgaggcagtataggagccct
gaggagatcgacgtacagctgcaggctgagaagcagaaggccagggaagaagaggagcaa
aaagaaggtggagatggggctgcaggtgaccccaaaaaggagaagaaatctctagactca
gatgagagtgaggatgaagaagatgactaccagcaaaaccgcaaaggcgttgaagggctc
ttcaacatcgagaaccccaaccaggtggcacagacaaccaaaaaggtcacacaactgtat
ctggatgggccaaaggagctttcgaggagagaacgagaagagattgagaagcagaaggca
aaagagcgttacatgaaaatgcacttggccgggaagacagagcaagccaaggctgacctg
gcccgctggccatcatccggaaacagcgggaggaggctgcccggaagaaggaagaggaaa
ggaaagcaaaagatgatgccacattgtcaggaaaacgaatgcagtcgctctccctgtata
agtaaccgcgacccatgggaggagatgccggggacctgggccgcgctgccaggacctctg
ctgtgtctcgcccaccctgtgccctggcgccgccgcaacagcccctcgtggccaggagcc
ccccatggcctggggcctcctcttcattttggcacagaaattgtttgggggatgttgtga

>gi568815586f:118881883_119256698|GENSCAN_predicted_peptide_9|131_aa
MRRMERRERDREEEEEERRRKKEEENEKKKEDDKEKEGEEGGGRRERQQRQPVLGLKHAA
KANAISSFPAQRGQIKSSLYITIGSQLARRQLGGGGGVLRIKLCQSWVKAGGCKKVLGIS
SPSIIKVRAQE

>gi568815586f:118881883_119256698|GENSCAN_predicted_CDS_9|396_bp
atgaggaggatggagaggagggaaagggatagagaggaggaagaagaagaaagaaggagg
aagaaggaggaggagaatgagaagaagaaggaagatgacaaggagaaggagggggaggag
ggaggaggaaggagggagaggcagcagagacagccagtcctggggctcaaacatgcagcc
aaggcaaacgccatctcctccttcccagcacagcgaggtcaaatcaagtcatctctatac
atcaccattggcagccagctggctagaaggcagttgggagggggtggaggtgtgctgcgg
ataaagctctgtcagagctgggtcaaggcagggggctgcaagaaggttctgggcatctcc
tctcccagtatcatcaaagtgagagctcaggaataa