Result of FASTA (ccds) for pF1KA1803
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1803, 1412 aa
  1>>>pF1KA1803 1412 - 1412 aa - 1412 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8533+/-0.00127; mu= 2.0581+/- 0.074
 mean_var=382.8464+/-97.786, 0's: 0 Z-trim(110.0): 218  B-trim: 652 in 1/52
 Lambda= 0.065548
 statistics sampled from 11046 (11282) to 11046 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.347), width:  16
 Scan time:  4.420

The best scores are:                                      opt bits E(32554)
CCDS35096.1 ZNF462 gene_id:58499|Hs108|chr9        (2506) 5972 581.4 1.1e-164


>>CCDS35096.1 ZNF462 gene_id:58499|Hs108|chr9             (2506 aa)
 initn: 5908 init1: 5908 opt: 5972  Z-score: 3070.0  bits: 581.4 E(32554): 1.1e-164
Smith-Waterman score: 9203; 95.7% identity (95.7% similar) in 1412 aa overlap (1-1412:1156-2506)

                                             10        20        30
pF1KA1                               MMRGVEGPQGSPRPPAPIQQLNRSSSERDG
                                     ::::::::::::::::::::::::::::::
CCDS35 VVGVLVHYQKRHPEIKVTAKYIRQAPPTAAMMRGVEGPQGSPRPPAPIQQLNRSSSERDG
        1130      1140      1150      1160      1170      1180     

               40        50        60        70        80        90
pF1KA1 PPVENEMFFCQHCDYGNRTVKGVLIHYQKKHRDFKANADVIRQHTATIRSLCDRNQKKPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PPVENEMFFCQHCDYGNRTVKGVLIHYQKKHRDFKANADVIRQHTATIRSLCDRNQKKPA
        1190      1200      1210      1220      1230      1240     

              100       110       120       130       140       150
pF1KA1 SCVLVSPSNLERDKTKLRALKCRQCSYTSPYFYALRKHIKKDHPALKATVTSIMRWAFLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SCVLVSPSNLERDKTKLRALKCRQCSYTSPYFYALRKHIKKDHPALKATVTSIMRWAFLD
        1250      1260      1270      1280      1290      1300     

              160       170       180       190       200       210
pF1KA1 GLIEAGYHCEWCIYSHTEPNGLLLHYQRRHPEHYVDYTYMATKLWAGPDPSPPSLTMPAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GLIEAGYHCEWCIYSHTEPNGLLLHYQRRHPEHYVDYTYMATKLWAGPDPSPPSLTMPAE
        1310      1320      1330      1340      1350      1360     

              220       230       240       250       260       270
pF1KA1 AKTYRCRDCVFEAVSIWDITNHYQAFHPWAMNGDESVLLDIIKEKDAVEKPILSSEELAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AKTYRCRDCVFEAVSIWDITNHYQAFHPWAMNGDESVLLDIIKEKDAVEKPILSSEELAG
        1370      1380      1390      1400      1410      1420     

              280       290       300       310       320       330
pF1KA1 PVNCENSIPTPFPEQEAECPEDARLSPEKSLQLASANPAISSTPYQCTVCQSEYNNLHGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PVNCENSIPTPFPEQEAECPEDARLSPEKSLQLASANPAISSTPYQCTVCQSEYNNLHGL
        1430      1440      1450      1460      1470      1480     

              340       350       360       370       380       390
pF1KA1 LTHYGKKHPGMKVKAADFAQDIDINPGAVYKCRHCPYINTRIHGVLTHYQKRHPSIKVTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LTHYGKKHPGMKVKAADFAQDIDINPGAVYKCRHCPYINTRIHGVLTHYQKRHPSIKVTA
        1490      1500      1510      1520      1530      1540     

              400       410       420       430       440       450
pF1KA1 EDFVHDVEQSADISQNDVEETSRIFKQGYGAYRCKLCPYTHGTLEKLKIHYEKYHNQPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EDFVHDVEQSADISQNDVEETSRIFKQGYGAYRCKLCPYTHGTLEKLKIHYEKYHNQPEF
        1550      1560      1570      1580      1590      1600     

              460       470       480       490       500       510
pF1KA1 DVFSQSPPKLPVPLEPEMTTEVSPSQVSITEEEVGEEPVSTSHFSTSHLVSHTVFRCQLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DVFSQSPPKLPVPLEPEMTTEVSPSQVSITEEEVGEEPVSTSHFSTSHLVSHTVFRCQLC
        1610      1620      1630      1640      1650      1660     

              520       530       540       550       560       570
pF1KA1 KYFCSTRKGIARHYRIKHNNVRAQPEGKNNLFKCALCAYTNPIRKGLAAHYQKRHDIDAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KYFCSTRKGIARHYRIKHNNVRAQPEGKNNLFKCALCAYTNPIRKGLAAHYQKRHDIDAY
        1670      1680      1690      1700      1710      1720     

              580       590       600       610       620       630
pF1KA1 YTHCLAASRTISDKPNKVIIPSPPKDDSPQLSEELRRAVEKKKCSLCSFQSFSKKGIVSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YTHCLAASRTISDKPNKVIIPSPPKDDSPQLSEELRRAVEKKKCSLCSFQSFSKKGIVSH
        1730      1740      1750      1760      1770      1780     

              640       650       660       670       680       690
pF1KA1 YMKRHPGVFPKKQHASKLGGYFTAVYADEHEKPTLMEEEERGNFEKAEVEGEAQEIEWLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YMKRHPGVFPKKQHASKLGGYFTAVYADEHEKPTLMEEEERGNFEKAEVEGEAQEIEWLP
        1790      1800      1810      1820      1830      1840     

              700       710       720       730       740       750
pF1KA1 FRCIKCFKLSFSTAELLCMHYTDHHSRDLKRDFIILGNGPRLQNSTYQCKHCDSKLQSTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 FRCIKCFKLSFSTAELLCMHYTDHHSRDLKRDFIILGNGPRLQNSTYQCKHCDSKLQSTA
        1850      1860      1870      1880      1890      1900     

              760       770       780       790       800       810
pF1KA1 ELTSHLNIHNEEFQKRAKRQERRKQLLSKQKYADGAFADFKQERPFGHLEEVPKIKERKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ELTSHLNIHNEEFQKRAKRQERRKQLLSKQKYADGAFADFKQERPFGHLEEVPKIKERKV
        1910      1920      1930      1940      1950      1960     

              820       830       840       850       860       870
pF1KA1 VGYKCKFCVEVHPTLRAICNHLRKHVQYGNVPAVSAAVKQEADDPAHLFLDGLEAAKDAS
       :::::::::::::::::::::::::::::::::::::::                     
CCDS35 VGYKCKFCVEVHPTLRAICNHLRKHVQYGNVPAVSAAVK---------------------
        1970      1980      1990      2000                         

              880       890       900       910       920       930
pF1KA1 GALVGRVDGEHCLLDGMLEDETRPGGYHCSQCDRVLMSMQGLRSHERSHLALAMFTREDK
                                               ::::::::::::::::::::
CCDS35 ----------------------------------------GLRSHERSHLALAMFTREDK
                                                 2010      2020    

              940       950       960       970       980       990
pF1KA1 YSCQYCSFVSAFRHNLDRHMQTHHGHHKPFRCKLCSFKSSYNSRLKTHILKAHAGEHAYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YSCQYCSFVSAFRHNLDRHMQTHHGHHKPFRCKLCSFKSSYNSRLKTHILKAHAGEHAYK
         2030      2040      2050      2060      2070      2080    

             1000      1010      1020      1030      1040      1050
pF1KA1 CSWCSFSTMTISQLKEHSLKVHGKALTLPRPRIVSLLSSHSHHSSQKATPAEEVEDSNDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 CSWCSFSTMTISQLKEHSLKVHGKALTLPRPRIVSLLSSHSHHSSQKATPAEEVEDSNDS
         2090      2100      2110      2120      2130      2140    

             1060      1070      1080      1090      1100      1110
pF1KA1 SYSEPPDVQQQLNHYQSAALARNNSRVSPVPLSGAAAGTEQKTEAVLHCEFCEFSSGYIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SYSEPPDVQQQLNHYQSAALARNNSRVSPVPLSGAAAGTEQKTEAVLHCEFCEFSSGYIQ
         2150      2160      2170      2180      2190      2200    

             1120      1130      1140      1150      1160      1170
pF1KA1 SIRRHYRDKHGGKKLFKCKDCSFYTGFKSAFTMHVEAGHSAVPEEGPKDLRCPLCLYHTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SIRRHYRDKHGGKKLFKCKDCSFYTGFKSAFTMHVEAGHSAVPEEGPKDLRCPLCLYHTK
         2210      2220      2230      2240      2250      2260    

             1180      1190      1200      1210      1220      1230
pF1KA1 YKRNMIDHIVLHREERVVPIEVCRSKLSKYLQGVVFRCDKCTFTCSSDESLQQHIEKHNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YKRNMIDHIVLHREERVVPIEVCRSKLSKYLQGVVFRCDKCTFTCSSDESLQQHIEKHNE
         2270      2280      2290      2300      2310      2320    

             1240      1250      1260      1270      1280      1290
pF1KA1 LKPYKCQLCYYETKHTEELDSHLRDEHKVSRNFELVGRVNLDQLEQMKEKMESSSSDDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LKPYKCQLCYYETKHTEELDSHLRDEHKVSRNFELVGRVNLDQLEQMKEKMESSSSDDED
         2330      2340      2350      2360      2370      2380    

             1300      1310      1320      1330      1340      1350
pF1KA1 KEEEMNSKAEDRELMRFSDHGAALNTEKRFPCEFCGRAFSQGSEWERHVLRHGMALNDTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KEEEMNSKAEDRELMRFSDHGAALNTEKRFPCEFCGRAFSQGSEWERHVLRHGMALNDTK
         2390      2400      2410      2420      2430      2440    

             1360      1370      1380      1390      1400      1410
pF1KA1 QVSREEIHPKEIMENSVKMPSIEEKEDDEAIGIDFSLKNETVAICVVTADKSLLENAEAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QVSREEIHPKEIMENSVKMPSIEEKEDDEAIGIDFSLKNETVAICVVTADKSLLENAEAK
         2450      2460      2470      2480      2490      2500    

         
pF1KA1 KE
       ::
CCDS35 KE
         




1412 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:03:54 2016 done: Wed Nov  2 22:03:55 2016
 Total Scan time:  4.420 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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