Result of FASTA (ccds) for pF1KA1741
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1741, 1729 aa
  1>>>pF1KA1741 1729 - 1729 aa - 1729 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.9142+/-0.00117; mu= -9.0550+/- 0.070
 mean_var=467.8713+/-96.416, 0's: 0 Z-trim(115.1): 31  B-trim: 159 in 1/51
 Lambda= 0.059294
 statistics sampled from 15618 (15645) to 15618 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.481), width:  16
 Scan time:  8.190

The best scores are:                                      opt bits E(32554)
CCDS7951.1 TNKS1BP1 gene_id:85456|Hs108|chr11      (1729) 11842 1028.9       0


>>CCDS7951.1 TNKS1BP1 gene_id:85456|Hs108|chr11           (1729 aa)
 initn: 11842 init1: 11842 opt: 11842  Z-score: 5490.1  bits: 1028.9 E(32554):    0
Smith-Waterman score: 11842; 100.0% identity (100.0% similar) in 1729 aa overlap (1-1729:1-1729)

               10        20        30        40        50        60
pF1KA1 MKVSTLRESSAMASPLPREMEEELVPTGSEPGDTRAKPPVKPKPRALPAKPALPAKPSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MKVSTLRESSAMASPLPREMEEELVPTGSEPGDTRAKPPVKPKPRALPAKPALPAKPSLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 VPVGPRPPRGPLAELPSARKMNMLAGPQPYGGSKRPLPFAPRPAVEASTGGEATQETGKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 VPVGPRPPRGPLAELPSARKMNMLAGPQPYGGSKRPLPFAPRPAVEASTGGEATQETGKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 EAGKEEPPPLTPPARCAAPGGVRKAPAPFRPASERFAATTVEEILAKMEQPRKEVLASPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 EAGKEEPPPLTPPARCAAPGGVRKAPAPFRPASERFAATTVEEILAKMEQPRKEVLASPD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 RLWGSRLTFNHDGSSRYGPRTYGTTTAPRDEDGSTLFRGWSQEGPVKSPAECREEHSKTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 RLWGSRLTFNHDGSSRYGPRTYGTTTAPRDEDGSTLFRGWSQEGPVKSPAECREEHSKTP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 EERSLPSDLAFNGDLAKAASSELPADISKPWIPSSPAPSSENGGPASPGLPAEASGSGPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 EERSLPSDLAFNGDLAKAASSELPADISKPWIPSSPAPSSENGGPASPGLPAEASGSGPG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 SPHLHPPDKSSPCHSQLLEAQTPEASQASPCPAVTPSAPSAALPDEGSRHTPSPGLPAEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SPHLHPPDKSSPCHSQLLEAQTPEASQASPCPAVTPSAPSAALPDEGSRHTPSPGLPAEG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 APEAPRPSSPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTRTFPSGGEEEAKGDAHLRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 APEAPRPSSPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTRTFPSGGEEEAKGDAHLRP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 TSLVQRRFSEGVLQSPSQDQEKLGGSLAALPQGQGSQLALDRPFGAESNWSLSQSFEWTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 TSLVQRRFSEGVLQSPSQDQEKLGGSLAALPQGQGSQLALDRPFGAESNWSLSQSFEWTF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 PTRPSGLGVWRLDSPPPSPITEASEAAEAAEAGNLAVSSREEGVSQQGQGAGSAPSGSGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 PTRPSGLGVWRLDSPPPSPITEASEAAEAAEAGNLAVSSREEGVSQQGQGAGSAPSGSGS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 SWVQGDDPSMSLTQKGDGESQPQFPAVPLEPLPTTEGTPGLPLQQAEERYESQEPLAGQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SWVQGDDPSMSLTQKGDGESQPQFPAVPLEPLPTTEGTPGLPLQQAEERYESQEPLAGQE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 SPLPLATREAALPILEPVLGQEQPAAPDQPCVLFADAPEPGQALPVEEEAVTLARAETTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SPLPLATREAALPILEPVLGQEQPAAPDQPCVLFADAPEPGQALPVEEEAVTLARAETTQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 ARTEAQDLCRASPEPPGPESSSRWLDDLLASPPPSGGGARRGAGAELKDTQSPSTCSEGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 ARTEAQDLCRASPEPPGPESSSRWLDDLLASPPPSGGGARRGAGAELKDTQSPSTCSEGL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 LGWSQKDLQSEFGITGDPQPSSFSPSSWCQGASQDYGLGGASPRGDPGLGERDWTSKYGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 LGWSQKDLQSEFGITGDPQPSSFSPSSWCQGASQDYGLGGASPRGDPGLGERDWTSKYGQ
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 GAGEGSTREWASRCGIGQEEMEASSSQDQSKVSAPGVLTAQDRVVGKPAQLGTQRSQEAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 GAGEGSTREWASRCGIGQEEMEASSSQDQSKVSAPGVLTAQDRVVGKPAQLGTQRSQEAD
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 VQDWEFRKRDSQGTYSSRDAELQDQEFGKRDSLGTYSSRDVSLGDWEFGKRDSLGAYASQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 VQDWEFRKRDSQGTYSSRDAELQDQEFGKRDSLGTYSSRDVSLGDWEFGKRDSLGAYASQ
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 DANEQGQDLGKRDHHGRYSSQDADEQDWEFQKRDVSLGTYGSRAAEPQEQEFGKSAWIRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 DANEQGQDLGKRDHHGRYSSQDADEQDWEFQKRDVSLGTYGSRAAEPQEQEFGKSAWIRD
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA1 YSSGGSSRTLDAQDRSFGTRPLSSGFSPEEAQQQDEEFEKKIPSVEDSLGEGSRDAGRPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 YSSGGSSRTLDAQDRSFGTRPLSSGFSPEEAQQQDEEFEKKIPSVEDSLGEGSRDAGRPG
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA1 ERGSGGLFSPSTAHVPDGALGQRDQSSWQNSDASQEVGGHQERQQAGAQGPGSADLEDGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 ERGSGGLFSPSTAHVPDGALGQRDQSSWQNSDASQEVGGHQERQQAGAQGPGSADLEDGE
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA1 MGKRGWVGEFSLSVGPQREAAFSPGQQDWSRDFCIEASERSYQFGIIGNDRVSGAGFSPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MGKRGWVGEFSLSVGPQREAAFSPGQQDWSRDFCIEASERSYQFGIIGNDRVSGAGFSPS
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA1 SKMEGGHFVPPGKTTAGSVDWTDQLGLRNLEVSSCVGSGGSSEARESAVGQMGWSGGLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SKMEGGHFVPPGKTTAGSVDWTDQLGLRNLEVSSCVGSGGSSEARESAVGQMGWSGGLSL
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA1 RDMNLTGCLESGGSEEPGGIGVGEKDWTSDVNVKSKDLAEVGEGGGHSQARESGVGQTDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 RDMNLTGCLESGGSEEPGGIGVGEKDWTSDVNVKSKDLAEVGEGGGHSQARESGVGQTDW
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA1 SGVEAGEFLKSRERGVGQADWTPDLGLRNMAPGAVCSPGESKELGVGQMDWGNNLGLRDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SGVEAGEFLKSRERGVGQADWTPDLGLRNMAPGAVCSPGESKELGVGQMDWGNNLGLRDL
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KA1 EVTCDPDSGGSQGLRGCGVGQMDWTQDLAPQNVELFGAPSEAREHGVGGVSQCPEPGLRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 EVTCDPDSGGSQGLRGCGVGQMDWTQDLAPQNVELFGAPSEAREHGVGGVSQCPEPGLRH
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
pF1KA1 NGSLSPGLEARDPLEARELGVGETSGPETQGEDYSSSSLEPHPADPGMETGEALSFGASP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 NGSLSPGLEARDPLEARELGVGETSGPETQGEDYSSSSLEPHPADPGMETGEALSFGASP
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
pF1KA1 GRCPARPPPSGSQGLLEEMLAASSSKAVARRESAASGLGGLLEEEGAGAGAAQEEVLEPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 GRCPARPPPSGSQGLLEEMLAASSSKAVARRESAASGLGGLLEEEGAGAGAAQEEVLEPG
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
pF1KA1 RDSPPSWRPQPDGEASQTEDVDGTWGSSAARWSDQGPAQTSRRPSQGPPARSPSQDFSFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 RDSPPSWRPQPDGEASQTEDVDGTWGSSAARWSDQGPAQTSRRPSQGPPARSPSQDFSFI
             1510      1520      1530      1540      1550      1560

             1570      1580      1590      1600      1610      1620
pF1KA1 EDTEILDSAMYRSRANLGRKRGHRAPVIRPGGTLGLSEAADSDAHLFQDSTEPRASRVPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 EDTEILDSAMYRSRANLGRKRGHRAPVIRPGGTLGLSEAADSDAHLFQDSTEPRASRVPS
             1570      1580      1590      1600      1610      1620

             1630      1640      1650      1660      1670      1680
pF1KA1 SDEEVVEEPQSRRTRMSLGTKGLKVNLFPGLSPSALKAKLRPRNRSAEEGELAESKSSQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SDEEVVEEPQSRRTRMSLGTKGLKVNLFPGLSPSALKAKLRPRNRSAEEGELAESKSSQK
             1630      1640      1650      1660      1670      1680

             1690      1700      1710      1720         
pF1KA1 ESAVQRSKSCKVPGLGKPLTLPPKPEKSSGSEGSSPNWLQALKLKKKKV
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 ESAVQRSKSCKVPGLGKPLTLPPKPEKSSGSEGSSPNWLQALKLKKKKV
             1690      1700      1710      1720         




1729 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:57:18 2016 done: Wed Nov  2 21:57:19 2016
 Total Scan time:  8.190 Total Display time:  0.140

Function used was FASTA [36.3.4 Apr, 2011]
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