GENSCAN 1.0	Date run:  2-Nov-116	Time: 21:35:12

Sequence gi568815589f:129953933_130235118 : 281186 bp : 48.04% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.10 PlyA -   1628   1623    6                               1.05
 1.09 Term -   3022   2879  144  1  0   35   38    96 0.825  -2.79
 1.08 Intr -   3532   3428  105  1  0   78  100   126 0.894  13.21
 1.07 Intr -   4621   4559   63  1  0  121   84    79 0.999   9.71
 1.06 Intr -   8298   8150  149  1  2   37   92    74 0.046   2.65
 1.05 Intr -  12407  12305  103  2  1   68   89     9 0.011  -1.25
 1.04 Intr -  24680  24533  148  1  1   83   63   156 0.748  12.84
 1.03 Intr -  25442  25386   57  1  0  104   55    67 0.861   3.00
 1.02 Intr -  41026  40911  116  1  2   94  111    52 0.781   7.35
 1.01 Init -  62539  62393  147  1  0   85  119    75 0.992  10.41
 1.00 Prom -  64354  64315   40                              -4.56

 2.02 PlyA -  64629  64624    6                               1.05
 2.01 Sngl -  88991  88422  570  2  0   53   36   240 0.805   9.46
 2.00 Prom -  91282  91243   40                              -5.96

 3.00 Prom +  91562  91601   40                              -7.36
 3.01 Init + 100001 100141  141  1  0  102   98   164 0.996  16.93
 3.02 Intr + 121704 121817  114  2  0   67   93   132 0.784  12.24
 3.03 Intr + 122480 122530   51  1  0   66  105    27 0.706   1.30
 3.04 Intr + 123367 123446   80  0  2   89   80    -7 0.688  -3.05
 3.05 Intr + 125698 125837  140  1  2   62   92   136 0.951  11.51
 3.06 Intr + 129633 129670   38  1  2   89  116    10 0.773   1.88
 3.07 Intr + 136944 137051  108  2  0   97   76    20 0.605   2.18
 3.08 Intr + 146724 146770   47  2  2   90   95     9 0.423  -0.99
 3.09 Intr + 147174 147291  118  0  1  102   98   113 0.999  14.17
 3.10 Intr + 150488 150618  131  1  2   75   89   114 0.884   9.69
 3.11 Intr + 162658 162773  116  1  2    7   94   120 0.001   4.59
 3.12 Intr + 165268 165635  368  2  2   63   55   102 0.002  -0.73
 3.13 Intr + 168693 168774   82  2  1  118   97   -11 0.496   2.01
 3.14 Intr + 170983 171032   50  2  2  110  111     3 0.604   3.20
 3.15 Intr + 173551 173634   84  0  0   97  101   -19 0.479   0.32
 3.16 Intr + 174708 174829  122  2  2   39   49    96 0.659   0.09
 3.17 Term + 181093 181189   97  1  1   92   48   178 0.773  11.64
 3.18 PlyA + 184055 184060    6                               1.05

 4.07 PlyA - 190395 190390    6                               1.05
 4.06 Term - 197221 197114  108  1  0  139   46    80 0.968   7.41
 4.05 Intr - 202626 202591   36  0  0   74   82    54 0.017   1.86
 4.04 Intr - 205093 204948  146  2  2   78   82    58 0.022   4.20
 4.03 Intr - 218197 218009  189  2  0   55   74   133 0.234   8.16
 4.02 Intr - 221576 221484   93  0  0   41   82    73 0.133   1.94
 4.01 Init - 223442 223145  298  2  1   89   58   143 0.342   7.19
 4.00 Prom - 224105 224066   40                              -7.76

 5.00 Prom + 226485 226524   40                              -7.06
 5.01 Init + 226925 226992   68  1  2  111   97    65 0.179   8.26
 5.02 Intr + 233614 233692   79  1  1   83   38    57 0.029  -0.25
 5.03 Intr + 238482 238647  166  2  1   89   69    63 0.447   4.03
 5.04 Intr + 247026 247050   25  1  1  106   89    29 0.560   1.88
 5.05 Intr + 254035 254232  198  1  0   64   25   128 0.256   2.57
 5.06 Intr + 263900 264038  139  2  1  105  105   259 0.975  29.77
 5.07 Intr + 265793 265919  127  1  1  111   71   151 0.897  15.95
 5.08 Intr + 268718 268806   89  0  2   75   69   248 0.991  21.29
 5.09 Intr + 269150 269227   78  1  0  115  100   145 0.997  18.15
 5.10 Term + 272457 272555   99  2  0  123   37   181 0.870  14.63
 5.11 PlyA + 274633 274638    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -   8350   8150  201  1  0   66   92   101 0.838   7.31
S.002 Term -  58501  58430   72  1  0   54   55   119 0.917   3.11


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589f:129953933_130235118|GENSCAN_predicted_peptide_1|343_aa
MPGLSKYFQRTSRLVVQYVLTDSGGCDESGIVKKKLMLELPEQCQEHLLDQFDNLEKHTQ
WGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNE
MNDYAGQHEVISENMASQIIVDLARYVQELKQERKSWHWHPAVPQTGQAPSHSEHLHLLC
LRLGGYSSDPCLTGLEEPSRNFTDEELLRLAACGALPDWSCALWSKDPANLYHLSEEKLQ
NFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKPQKA
LHGESFSFCVNHCGDQKLKCGESSVLEFETFYLLSHQGDKVET

>gi568815589f:129953933_130235118|GENSCAN_predicted_CDS_1|1032_bp
atgcccggcctcagcaaatattttcaaaggacatctagattggtagtgcagtatgtcttg
actgatagtgggggatgtgatgaatcaggtattgtgaagaagaaactcatgttagaacta
cctgaacaatgccaagagcacctcctggatcagtttgacaacttagaaaaacacacacag
tggggaattgatattcttgagaaatatatcaagtttgtgaaagaaaggacagagattgaa
ctcagctatgcaaagcaactcaggaatctttcaaagaagtaccaacctaaaaagaactcg
aaggaggaagaagaatacaagtatacgtcatgtaaagctttcatttccaacctgaacgaa
atgaatgattacgcagggcagcatgaagttatctccgagaacatggcatcacagatcatt
gtggacttggcacgctatgttcaggaactgaaacaggagaggaaatcatggcactggcat
ccagctgttcctcaaacagggcaagccccttcacactcagagcatctgcacttgctctgc
ctgcggcttggagggtattcctcagacccttgcctcacagggctggaggagccttccagg
aatttcacagatgaggaacttctgaggttagctgcatgcggggcactgcctgactggagc
tgtgccctttggtccaaggacccagccaacctgtatcatctcagtgaggagaagctgcag
aactttcacgatggccgtaaagcacagcagcacatcgagacttgctggaagcagcttgaa
tctagtaaaaggcgatttgaacgcgattgcaaagaggcggacagggcgcagcagtacttt
gagaaaatggacgctgacatcaatgtcacaaaagcggatgttgaaaagccacaaaaggcg
ctacatggggaatcattttcattttgtgtcaaccattgtggggaccagaagctcaagtgt
ggggaatcttcggtgttagaatttgagacgttttatctgttgagtcaccagggtgataaa
gtggagacttag

>gi568815589f:129953933_130235118|GENSCAN_predicted_peptide_2|189_aa
MRGARCVSPRPGEGARAALLGGGEGALVGVLAAWGGGGVPMPLVRLGPSRRCGPACPSEA
RGVGAGPRRPEERRGRASLSPAPRSGPCVSGRALIPRGEPRMPGEGRDRAWGRGGPGCAA
LRWVSGRPGREFCPGSAEALADRALPRERGGRGERRGSGFGVLGRECGLRSGGEDFWPVA
APGALVLSG

>gi568815589f:129953933_130235118|GENSCAN_predicted_CDS_2|570_bp
atgcggggcgcgcgctgcgtttccccgcggcctggggagggggcgcgggccgcgctgctg
ggcggaggcgagggcgcgctggtcggggtcctcgcggcctggggaggaggcggggttcca
atgcccctcgtccgccttggcccgagcaggaggtgcgggccggcttgtccttcggaggcg
aggggagttggtgcgggtccccggcggcctgaggaacggcgcgggcgggcctccctgtcc
ccggcgccccggagcgggccgtgtgtgtcgggccgagccctaatcccccggggcgagccg
cggatgcccggggagggccgggaccgggcgtgggggcgtggaggccccggctgcgcggcg
ctgcgttgggtctcggggcgccccggccgcgagttctgtcctggctccgcggaggcgctg
gcggatcgggcacttccccgggagcggggcggccggggcgagcgccgggggtcgggtttt
ggggtgctggggcgagagtgcggtcttcgctctggaggcgaggacttctggcccgtggcg
gctccgggcgcacttgttctttcggggtag

>gi568815589f:129953933_130235118|GENSCAN_predicted_peptide_3|628_aa
MAALAPVGSPASRGPRLAAGLRLLPMLGLLQLLAEPGLGRVHHLALKDDVRHKVHLNTFG
FFKDGYMVVNVSSLSLNEPEDKDVTIGFSLDRTKNDGFSSYLDEDVNYCILKKQSVSVTL
LILDISRSEVRVKSPPEAGTQLPKIIFSRDEKVLGQSQEPNVNPASAGNQTQKTQDGGKS
KRSTVDSKFFFNISTDDQEGLYSLYFHKCLGKELPSDKFTFSLDGFPIEGWAVVYYITHL
LKGALLFITIALIGTGWAFIKHILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYG
LWKDSLFLVDLLCCGAILFPVVWLRLAEKQERLTGAESEISVALCTPPSRVPLVHYGSRI
EERAPPLLGILTHPMHMAALLAGEPRRPGSPQVPICSSFTHWILARGGSRCDTVYATFGI
GLILYDTNTVMASSQLLTASQLLSVYYPINSPATLRAGIVTSALTGEETEAQRGLADLSE
ATQPDSSCPGGRGCSCRVYCCIPGPGSELGLAAINLAKLKLFRHYYVLIVCYIYFTRIIA
FLLKLAVPFQWKWLYQLLDETATLVFFVLTGYKFRPASDNPYLQLSQEEEDLEMESVVTT
SGVMESMKKVKKVTNGSVEPQGEWEGAV

>gi568815589f:129953933_130235118|GENSCAN_predicted_CDS_3|1887_bp
atggccgctctggcgcccgtcggctcccccgcctcccgcggtcctaggctggccgcgggc
ctccggctgctcccaatgctgggtttgctgcagttgctggccgagcctggcctgggccgc
gtccatcacctggcactcaaggatgatgtgaggcataaagttcatctgaacacctttggc
ttcttcaaggatgggtacatggtggtgaatgtcagtagcctctcactgaatgagcctgaa
gacaaggatgtgactattggatttagcctagaccgtacaaagaatgatggcttttcttct
tacctggatgaagatgtgaattactgtattttaaagaaacagtctgtctctgtcaccctt
ttaatcctagacatctccagaagtgaggtaagagtaaagtctccaccagaagctggtacc
cagttaccaaagatcatcttcagcagggatgagaaagtccttggtcagagccaggagcct
aatgttaaccctgcttcagcaggcaaccagacccagaagacacaagatggtggaaagtct
aaaagaagtacagtggattcaaagtttttctttaacatcagcactgatgaccaagaaggc
ctttacagtctttattttcataaatgccttggaaaagaattgccaagtgacaagtttaca
ttcagccttgatggcttccctatcgaaggctgggctgttgtgtactacataactcacctt
ttgaaaggggcgctactcttcatcaccattgcactcattggcactggctgggctttcatt
aagcacatcctttctgataaagacaaaaagatcttcatgattgtcattccactccaggtc
ctggcaaatgtagcctacatcatcatagagtccaccgaggagggcacgactgaatatggc
ttgtggaaggactctctatttctggtcgacctgttgtgttgtggtgccatcctcttccca
gtggtgtggctgcggctggcagagaaacaggagagactgacgggagctgagtctgagatc
agcgtggccctttgcacaccaccttctcgggtgcctttggtgcattatggctctagaatc
gaagagcgggctccacccctgctcggcatcctgactcatcctatgcatatggcagcgctg
cttgcaggagagcccaggcgccctggcagcccccaggtccccatttgttccagttttact
cactggattcttgccagaggtggcagccgctgtgacacagtatatgctacatttggtatt
gggctaatcctatatgacactaacactgtcatggcaagtagccaactgctcactgcgagc
cagctgctttctgtgtactatcccattaattccccagcaaccctaagggcgggcatcgtt
acttctgccttaacaggtgaagaaaccgaggctcagagagggttagctgacttatcggag
gccacacagccagatagcagctgccccgggggcagaggctgcagctgtcgtgtatactgc
tgtatcccagggcctggctcagagttggggcttgctgctattaacttagcaaagctgaaa
cttttcagacattattacgtcttgattgtgtgttacatatacttcactaggatcattgca
tttctcctcaaactcgctgttccattccagtggaagtggctctaccagctcctggatgaa
acggccacactggtcttctttgttctaacggggtataaattccgtccggcttcagataac
ccctacctacaactttctcaggaagaagaagacttggaaatggagtccgttgtgacaaca
tctggggtgatggaaagtatgaagaaagtcaagaaggtgaccaacggctccgtggagccc
cagggcgagtgggaaggcgccgtgtga

>gi568815589f:129953933_130235118|GENSCAN_predicted_peptide_4|289_aa
MVSSDCLLKAAAWPTLVEQSWVGSDDQRIFLTLEEGALMGPRTVHNQRHPRTQLLTPTWS
QGPVLCSGSQRRQPWAPALHLLLCAGTILGIREKAEESQGPPSAAQTRVKDANSWAPARP
KESEIREGSPALALRPPPRRGGPGRSDVNEARSRPGDIHSFDTDSWGAGDTAAHGTGVPQ
PSQGGQGAVRDAAGHWGCPPHTGETLTWGHPQASEPGDGAPCEDQMAFNADRRYRDLLGM
KQLPFGNDMKSILKNSAPTLSGEPPQMLQGDCEDPQAPRRLVCSFCQGV

>gi568815589f:129953933_130235118|GENSCAN_predicted_CDS_4|870_bp
atggtctccagtgactgcctcctgaaggcagcagcttggcccaccctggttgagcagagt
tgggtggggagtgatgatcagagaatattcctcaccctagaggaaggggccctcatgggc
cccaggacagtccacaaccagagacacccaagaacccaactgctgaccccaacctggagc
cagggacccgtcctctgctcggggtcacagaggcgtcagccgtgggctcctgccctccac
ctgctcctgtgtgccggcaccattctgggcattagggaaaaggcagaggagagtcaagga
ccaccatctgcagcacaaacacgtgtcaaggatgcaaattcctgggccccagccagacct
aaagaatcggaaatccgggagggcagcccagccctggcgctccggcccccgccgcggcgg
ggagggcccggaagatcggatgtgaatgaggccaggtcccggcccggagacattcattca
ttcgacacggattcatggggtgccggggacacggcggcccacgggacaggagtgccccag
ccctcgcagggcgggcagggggctgtgcgggatgcggcaggtcactgggggtgtccaccc
cacactggggaaaccctgacctgggggcacccccaagccagtgaaccaggggacggggct
ccttgcgaggaccagatggcatttaacgctgataggcgctatcgtgacctcctgggcatg
aaacagctgccctttggcaatgacatgaagtccatccttaagaattctgccccaacatta
tctggggagcccccccagatgctccagggagactgtgaagaccctcaggctccccgacgc
ctcgtgtgctccttctgtcagggtgtttga

>gi568815589f:129953933_130235118|GENSCAN_predicted_peptide_5|355_aa
MEGLCGGPAGLVAGLFCVWLLAWSRSALVQLRGQTSVFRKQIHCILGGEPSRGLLFLDTG
PVVVGNEALQTLIYLLPEGHFVERGSWGAWRSQELTSFVGQRGEVTEKEVQQCSCSLEPN
SPSWKIRNHNEGCLRNGRSQACKGDCELCNHLESDEGIILSGDSRVHTVIGHQSMMEKMY
KGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSV
TSRGTLDEKLRCKSCPLGPVWQQLEGPGAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNT
VELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQALSLYDGLV

>gi568815589f:129953933_130235118|GENSCAN_predicted_CDS_5|1068_bp
atggagggcctctgtggtggcccggctgggttggtggccggattgttctgtgtctggctc
ctggcttggagccgttctgccctggtgcagctcaggggccagacctcggtgtttcggaag
cagatccactgcattctgggaggggagccctctcgggggctgctcttcctggacacgggg
cctgtcgttgtgggaaatgaggcgctccagaccctcatttacttgttgcctgaaggtcac
tttgtggagcgtgggagctggggggcctggaggtctcaggagttgacctctttcgtggga
cagagaggggaggttaccgagaaggaggtccagcagtgttcctgctcacttgagcccaat
tcaccgtcgtggaagatcaggaaccacaatgagggctgcttaagaaatggcagatcccag
gcctgtaaaggtgactgtgagctctgtaatcacctggaaagtgatgagggcattatcctg
agtggagacagcagggtacacaccgtcatcgggcaccagtccatgatggaaaaaatgtac
aaaggcttcatcaaggactgccccagtgggcagctggatgcggcaggcttccagaagatc
tacaagcaattcttcccgttcggagaccccaccaagtttgccacatttgttttcaacgtc
tttgatgaaaacaaggacgggcgaattgagttctccgagttcatccaggcgctgtcggtg
acctcacggggaaccctggatgagaagctacggtgtaagtcctgcccccttggccctgtg
tggcagcagctggagggcccaggggccttcaagctctacgacttggacaatgatggctac
atcaccaggaatgagatgctggacattgtggatgccatttaccagatggtggggaatacc
gtggagctcccagaggaggagaacactcctgagaagagggtggaccggatctttgccatg
atggataagaatgccgacgggaagctgaccctgcaggagttccaggagggttccaaggca
gacccgtccattgtgcaggcgctgtccctctacgacgggctggtatag