Result of FASTA (ccds) for pF1KA1464
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1464, 620 aa
  1>>>pF1KA1464 620 - 620 aa - 620 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4368+/-0.000875; mu= 0.9762+/- 0.053
 mean_var=210.6540+/-42.453, 0's: 0 Z-trim(113.9): 23  B-trim: 11 in 1/53
 Lambda= 0.088367
 statistics sampled from 14447 (14460) to 14447 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.444), width:  16
 Scan time:  4.260

The best scores are:                                      opt bits E(32554)
CCDS32469.1 RANBP10 gene_id:57610|Hs108|chr16      ( 620) 4229 551.8 9.5e-157
CCDS4529.1 RANBP9 gene_id:10048|Hs108|chr6         ( 729) 2815 371.6  2e-102
CCDS81999.1 RANBP10 gene_id:57610|Hs108|chr16      ( 594) 1748 235.5 1.5e-61


>>CCDS32469.1 RANBP10 gene_id:57610|Hs108|chr16           (620 aa)
 initn: 4229 init1: 4229 opt: 4229  Z-score: 2927.6  bits: 551.8 E(32554): 9.5e-157
Smith-Waterman score: 4229; 100.0% identity (100.0% similar) in 620 aa overlap (1-620:1-620)

               10        20        30        40        50        60
pF1KA1 MAAATADPGAGNPQPGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQQETPLPRSWSPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAAATADPGAGNPQPGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQQETPLPRSWSPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 DKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 GLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 FYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 VHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 LVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 SYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 SSPSSVNYSESNSTDSTKSQHHSSTSNQETSDSEMEMEAEHYPNGVLGSMSTRIVNGAYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSPSSVNYSESNSTDSTKSQHHSSTSNQETSDSEMEMEAEHYPNGVLGSMSTRIVNGAYK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 HEDLQTDESSMDDRHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HEDLQTDESSMDDRHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 DAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLR
              550       560       570       580       590       600

              610       620
pF1KA1 LMARAGLGSCSFARVDDYLH
       ::::::::::::::::::::
CCDS32 LMARAGLGSCSFARVDDYLH
              610       620

>>CCDS4529.1 RANBP9 gene_id:10048|Hs108|chr6              (729 aa)
 initn: 2826 init1: 2002 opt: 2815  Z-score: 1952.3  bits: 371.6 E(32554): 2e-102
Smith-Waterman score: 2835; 66.3% identity (81.2% similar) in 658 aa overlap (3-620:93-729)

                                           10         20        30 
pF1KA1                             MAAATADPGAGNPQP-GDSSGGGAGGGLPSPG
                                     :..: :..: : : : ..: : .:: :.:.
CCDS45 AAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPTPA
             70        80        90       100       110       120  

                                   40        50        60        70
pF1KA1 ---------------------EQELSRRLQRLYPAVNQQETPLPRSWSPKDKYNYIGLSQ
                            :.::.:::.::::::..::::::::::::::..::::::
CCDS45 LVAGSSAAAPFPHGDSALNEQEKELQRRLKRLYPAVDEQETPLPRSWSPKDKFSYIGLSQ
            130       140       150       160       170       180  

               80        90       100       110       120       130
pF1KA1 GNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMN
       .:::::::::::. ::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMN
            190       200       210       220       230       240  

              140       150       160       170       180       190
pF1KA1 RLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLG
       :::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS45 RLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLG
            250       260       270       280       290       300  

              200       210       220       230       240       250
pF1KA1 IAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARL
       ::::::: :::::::::::::.:::::::.::.:::::::::::.:.:. .  :::. : 
CCDS45 IAFTDLPPNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDRE
            310       320       330       340       350       360  

              260       270       280       290       300       310
pF1KA1 GEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEA
       ::::...:.::::::::::::::: :::: :.  . :: :::::::.:::::: ::.:::
CCDS45 GEWQTMIQKMVSSYLVHHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEA
            370       380       390       400       410       420  

              320       330       340       350       360          
pF1KA1 IETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYP------G
       :::::..::.:::.:::::: :: :::.::::::::::: :..::::::::::      .
CCDS45 IETTQQLYPSLLERNPNLLFTLKVRQFIEMVNGTDSEVRCLGGRSPKSQDSYPVSPRPFS
            430       440       450       460       470       480  

          370       380                390       400       410     
pF1KA1 SPSLSPRHGPSSSHMHN--TGADSP-------SCSNGVASTKSKQNHSKYPAPSSSSSSS
       :::.:: ::    ..::  .:  :        :::::: :.:..:.. .           
CCDS45 SPSMSPSHG---MNIHNLASGKGSTAHFSGFESCSNGVISNKAHQSYCH-----------
            490          500       510       520                   

         420       430       440       450       460       470     
pF1KA1 SSSSSSSPSSVNYSESNSTDSTKSQHHSSTSNQETSDSEMEMEAEHYPNGVLGSMSTRIV
         :.. . :..:  : :: . ..::.     :. ::. ...::..:: :::  . :. ..
CCDS45 --SNKHQSSNLNVPELNSINMSRSQQ----VNNFTSN-DVDMETDHYSNGVGETSSNGFL
        530       540       550            560       570       580 

         480          490       500       510       520       530  
pF1KA1 NGAYKHEDLQTD---ESSMDDRHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKN
       ::. ::.  . :   :  .:. . :::::::.::: ::.: :::::::.:::: :. :::
CCDS45 NGSSKHDHEMEDCDTEMEVDSSQLRRQLCGGSQAAIERMIHFGRELQAMSEQLRRDCGKN
             590       600       610       620       630       640 

            540       550       560       570       580       590  
pF1KA1 LAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLAL
        :. .::.::::::::::::. :::.:::::::::::.::::::::..:::::::: ::.
CCDS45 TANKKMLKDAFSLLAYSDPWNSPVGNQLDPIQREPVCSALNSAILETHNLPKQPPLALAM
             650       660       670       680       690       700 

            600       610       620
pF1KA1 GQASECLRLMARAGLGSCSFARVDDYLH
       :::..:: ::::.:.:::.:: :.::::
CCDS45 GQATQCLGLMARSGIGSCAFATVEDYLH
             710       720         

>>CCDS81999.1 RANBP10 gene_id:57610|Hs108|chr16           (594 aa)
 initn: 2971 init1: 1746 opt: 1748  Z-score: 1218.5  bits: 235.5 E(32554): 1.5e-61
Smith-Waterman score: 3609; 86.8% identity (86.8% similar) in 650 aa overlap (1-620:1-594)

               10        20        30        40        50        60
pF1KA1 MAAATADPGAGNPQPGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQQETPLPRSWSPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MAAATADPGAGNPQPGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQQETPLPRSWSPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 DKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 GLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTC
       ::::::::::::::                                              
CCDS81 GLSAQGVNMNRLPG----------------------------------------------
              130                                                  

              190       200       210       220       230       240
pF1KA1 FYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGT
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ----------IAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGT
                    140       150       160       170       180    

              250       260       270       280       290       300
pF1KA1 VHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQK
          190       200       210       220       230       240    

              310       320       330       340       350       360
pF1KA1 LVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQD
          250       260       270       280       290       300    

              370       380       390       400       410       420
pF1KA1 SYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVASTKSKQNHSKYPAPSSSSSSSSSSSS
          310       320       330       340       350       360    

              430       440       450                              
pF1KA1 SSPSSVNYSESNSTDSTKSQHHSSTSNQETS-----------------------------
       :::::::::::::::::::::::::::::::                             
CCDS81 SSPSSVNYSESNSTDSTKSQHHSSTSNQETSNPWLQLERRPNQAAPTTPPGPTPTSTPPH
          370       380       390       400       410       420    

              460       470       480       490       500       510
pF1KA1 -DSEMEMEAEHYPNGVLGSMSTRIVNGAYKHEDLQTDESSMDDRHPRRQLCGGNQAATER
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SDSEMEMEAEHYPNGVLGSMSTRIVNGAYKHEDLQTDESSMDDRHPRRQLCGGNQAATER
          430       440       450       460       470       480    

              520       530       540       550       560       570
pF1KA1 IILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 IILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCA
          490       500       510       520       530       540    

              580       590       600       610       620
pF1KA1 ALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFARVDDYLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFARVDDYLH
          550       560       570       580       590    




620 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:13:13 2016 done: Wed Nov  2 21:13:14 2016
 Total Scan time:  4.260 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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