Result of FASTA (ccds) for pF1KA1452
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1452, 708 aa
  1>>>pF1KA1452 708 - 708 aa - 708 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9829+/-0.00091; mu= 13.0890+/- 0.055
 mean_var=123.3482+/-24.226, 0's: 0 Z-trim(109.6): 15  B-trim: 0 in 0/52
 Lambda= 0.115480
 statistics sampled from 10965 (10971) to 10965 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.337), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS10605.1 POLR3E gene_id:55718|Hs108|chr16       ( 708) 4721 798.1       0
CCDS73845.1 POLR3E gene_id:55718|Hs108|chr16       ( 672) 4489 759.4 3.9e-219
CCDS58434.1 POLR3E gene_id:55718|Hs108|chr16       ( 672) 4410 746.2 3.6e-215
CCDS58432.1 POLR3E gene_id:55718|Hs108|chr16       ( 687) 4318 730.9 1.5e-210
CCDS58433.1 POLR3E gene_id:55718|Hs108|chr16       ( 666) 4312 729.9 2.9e-210


>>CCDS10605.1 POLR3E gene_id:55718|Hs108|chr16            (708 aa)
 initn: 4721 init1: 4721 opt: 4721  Z-score: 4256.2  bits: 798.1 E(32554):    0
Smith-Waterman score: 4721; 100.0% identity (100.0% similar) in 708 aa overlap (1-708:1-708)

               10        20        30        40        50        60
pF1KA1 MANEEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MANEEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 SPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 LGPSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LGPSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 TQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 MLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 RRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 GTDSFNGHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GTDSFNGHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 GISDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GISDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKN
              610       620       630       640       650       660

              670       680       690       700        
pF1KA1 YRVRRNMIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YRVRRNMIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS
              670       680       690       700        

>>CCDS73845.1 POLR3E gene_id:55718|Hs108|chr16            (672 aa)
 initn: 4489 init1: 4489 opt: 4489  Z-score: 4047.6  bits: 759.4 E(32554): 3.9e-219
Smith-Waterman score: 4489; 100.0% identity (100.0% similar) in 672 aa overlap (37-708:1-672)

         10        20        30        40        50        60      
pF1KA1 DPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLN
                                     ::::::::::::::::::::::::::::::
CCDS73                               MTYDDIPHLSAKIKPKQQKVELEMAIDTLN
                                             10        20        30

         70        80        90       100       110       120      
pF1KA1 PNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHL
               40        50        60        70        80        90

        130       140       150       160       170       180      
pF1KA1 TPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRPESEQAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRPESEQAR
              100       110       120       130       140       150

        190       200       210       220       230       240      
pF1KA1 QRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYL
              160       170       180       190       200       210

        250       260       270       280       290       300      
pF1KA1 MMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSID
              220       230       240       250       260       270

        310       320       330       340       350       360      
pF1KA1 SVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWV
              280       290       300       310       320       330

        370       380       390       400       410       420      
pF1KA1 VRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGI
              340       350       360       370       380       390

        430       440       450       460       470       480      
pF1KA1 QAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQL
              400       410       420       430       440       450

        490       500       510       520       530       540      
pF1KA1 RVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFN
              460       470       480       490       500       510

        550       560       570       580       590       600      
pF1KA1 GHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRM
              520       530       540       550       560       570

        610       620       630       640       650       660      
pF1KA1 LQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRN
              580       590       600       610       620       630

        670       680       690       700        
pF1KA1 MIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS
       ::::::::::::::::::::::::::::::::::::::::::
CCDS73 MIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS
              640       650       660       670  

>>CCDS58434.1 POLR3E gene_id:55718|Hs108|chr16            (672 aa)
 initn: 4408 init1: 4408 opt: 4410  Z-score: 3976.5  bits: 746.2 E(32554): 3.6e-215
Smith-Waterman score: 4410; 99.0% identity (99.4% similar) in 669 aa overlap (40-708:5-672)

      10        20        30        40        50        60         
pF1KA1 VQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNY
                                     .: : .  .:::::::::::::::::::::
CCDS58                           MANEEDDP-VVQEIKPKQQKVELEMAIDTLNPNY
                                          10        20        30   

      70        80        90       100       110       120         
pF1KA1 CRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 CRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPL
            40        50        60        70        80        90   

     130       140       150       160       170       180         
pF1KA1 HGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 HGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRR
           100       110       120       130       140       150   

     190       200       210       220       230       240         
pF1KA1 VQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMML
           160       170       180       190       200       210   

     250       260       270       280       290       300         
pF1KA1 MPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVA
           220       230       240       250       260       270   

     310       320       330       340       350       360         
pF1KA1 VLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRK
           280       290       300       310       320       330   

     370       380       390       400       410       420         
pF1KA1 EVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAK
           340       350       360       370       380       390   

     430       440       450       460       470       480         
pF1KA1 LEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVP
           400       410       420       430       440       450   

     490       500       510       520       530       540         
pF1KA1 AVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 AVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHP
           460       470       480       490       500       510   

     550       560       570       580       590       600         
pF1KA1 PQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQD
           520       530       540       550       560       570   

     610       620       630       640       650       660         
pF1KA1 TVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQ
           580       590       600       610       620       630   

     670       680       690       700        
pF1KA1 SRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS
       :::::::::::::::::::::::::::::::::::::::
CCDS58 SRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS
           640       650       660       670  

>>CCDS58432.1 POLR3E gene_id:55718|Hs108|chr16            (687 aa)
 initn: 4318 init1: 4318 opt: 4318  Z-score: 3893.5  bits: 730.9 E(32554): 1.5e-210
Smith-Waterman score: 4533; 97.0% identity (97.0% similar) in 708 aa overlap (1-708:1-687)

               10        20        30        40        50        60
pF1KA1 MANEEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MANEEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 SPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 LGPSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LGPSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 TQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 MLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 RRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 GTDSFNGHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GTDSFNGHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 GISDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKN
       ::::::::::::::::::::::::::::::::::::::::::::::::            
CCDS58 GISDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQ------------
              610       620       630       640                    

              670       680       690       700        
pF1KA1 YRVRRNMIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS
                :::::::::::::::::::::::::::::::::::::::
CCDS58 ---------SRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS
               650       660       670       680       

>>CCDS58433.1 POLR3E gene_id:55718|Hs108|chr16            (666 aa)
 initn: 4312 init1: 4312 opt: 4312  Z-score: 3888.3  bits: 729.9 E(32554): 2.9e-210
Smith-Waterman score: 4357; 94.1% identity (94.1% similar) in 708 aa overlap (1-708:1-666)

               10        20        30        40        50        60
pF1KA1 MANEEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MANEEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 SPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 LGPSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LGPSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 TQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 MLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 RRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 GTDSFNGHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GTDSFNGHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 GISDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKN
       ::::::::::::::::::::::::::::::::::::::::::::::::            
CCDS58 GISDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQ------------
              610       620       630       640                    

              670       680       690       700        
pF1KA1 YRVRRNMIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS
                                     ::::::::::::::::::
CCDS58 ------------------------------DCCVSYGGMWYLKGTVQS
                                    650       660      




708 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:12:32 2016 done: Wed Nov  2 21:12:33 2016
 Total Scan time:  2.650 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com