Result of FASTA (ccds) for pF1KA1404
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1404, 1918 aa
  1>>>pF1KA1404 1918 - 1918 aa - 1918 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3424+/-0.00149; mu= 17.4897+/- 0.091
 mean_var=213.6339+/-40.146, 0's: 0 Z-trim(107.4): 104  B-trim: 59 in 2/49
 Lambda= 0.087748
 statistics sampled from 9474 (9571) to 9474 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.294), width:  16
 Scan time:  4.980

The best scores are:                                      opt bits E(32554)
CCDS13417.1 ZNFX1 gene_id:57169|Hs108|chr20        (1918) 13200 1686.2       0


>>CCDS13417.1 ZNFX1 gene_id:57169|Hs108|chr20             (1918 aa)
 initn: 13200 init1: 13200 opt: 13200  Z-score: 9040.7  bits: 1686.2 E(32554):    0
Smith-Waterman score: 13200; 99.9% identity (99.9% similar) in 1918 aa overlap (1-1918:1-1918)

               10        20        30        40        50        60
pF1KA1 MEERRPHLDARPRNSHTNHRGPVDGELPPRARNQANNPPANALRGGASHPGRHPRANNHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MEERRPHLDARPRNSHTNHRGPVDGELPPRARNQANNPPANALRGGASHPGRHPRANNHP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 AAYWQREERFRAMGRNPHQGRRNQEGHASDEARDQRHDQENDTRWRNGNQDCRNRRPPWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AAYWQREERFRAMGRNPHQGRRNQEGHASDEARDQRHDQENDTRWRNGNQDCRNRRPPWS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 NDNFQQWRTPHQKPTEQPQQAKKLGYKFLESLLQKDPSEVVITLATSLGLKELLSHSSMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NDNFQQWRTPHQKPTEQPQQAKKLGYKFLESLLQKDPSEVVITLATSLGLKELLSHSSMK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 SNFLELICQVLRKACSSKMDRQSVLHVLGILKNSKFLKVCLPAYVVGMITEPIPDIRNQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SNFLELICQVLRKACSSKMDRQSVLHVLGILKNSKFLKVCLPAYVVGMITEPIPDIRNQY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 PEHISNIISLLQDLVSVFPASSVQETSMLVSLLPTSLNALRASGVDIEEETEKNLEKVQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PEHISNIISLLQDLVSVFPASSVQETSMLVSLLPTSLNALRASGVDIEEETEKNLEKVQT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 IIEHLQEKRREGTLRVDTYTLVQPEAEDHVESYRTMPIYPTYNEVHLDERPFLRPNIISG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IIEHLQEKRREGTLRVDTYTLVQPEAEDHVESYRTMPIYPTYNEVHLDERPFLRPNIISG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 KYDSTAIYLDTHFRLLREDFVRPLREGILELLQSFEDQGLRKRKFDDIRIYFDTRIITPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KYDSTAIYLDTHFRLLREDFVRPLREGILELLQSFEDQGLRKRKFDDIRIYFDTRIITPM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 CSSSGIVYKVQFDTKPLKFVRWQNSKRLLYGSLVCMSKDNFETFLFATVSNREQEDLCRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CSSSGIVYKVQFDTKPLKFVRWQNSKRLLYGSLVCMSKDNFETFLFATVSNREQEDLCRG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 IVQLCFNEQSQQLLAEVQPSDSFLMVETTAYFEAYRHVLEGLQEVQEEDVPFQRNIVECN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IVQLCFNEQSQQLLAEVQPSDSFLMVETTAYFEAYRHVLEGLQEVQEEDVPFQRNIVECN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 SHVKEPRYLLMGGRYDFTPLIENPSATGEFLRNVEGLRHPRINVLDPGQWPSKEALKLDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SHVKEPRYLLMGGRYDFTPLIENPSATGEFLRNVEGLRHPRINVLDPGQWPSKEALKLDD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 SQMEALQFALTRELAIIQGPPGTGKTYVGLKIVQALLTNESVWQISLQKFPILVVCYTNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SQMEALQFALTRELAIIQGPPGTGKTYVGLKIVQALLTNESVWQISLQKFPILVVCYTNH
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 ALDQFLEGIYNCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRNLPMHLRRAYMSIMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ALDQFLEGIYNCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRNLPMHLRRAYMSIMT
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 QMKESEQELHEGAKTLECTMRGVLREQYLQKYISPQHWESLMNGPVQDSEWICFQHWKHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QMKESEQELHEGAKTLECTMRGVLREQYLQKYISPQHWESLMNGPVQDSEWICFQHWKHS
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 MMLEWLGLGVGSFTQSVSPAGPENTAQAEGDEEEEGEEESSLIEIAEEADLIQADRVIEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MMLEWLGLGVGSFTQSVSPAGPENTAQAEGDEEEEGEEESSLIEIAEEADLIQADRVIEE
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 EEVVRPQRRKKEESGADQELAKMLLAMRLDHCGTGTAAGQEQATGEWQTQRNQKKKMKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EEVVRPQRRKKEESGADQELAKMLLAMRLDHCGTGTAAGQEQATGEWQTQRNQKKKMKKR
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 VKDELRKLNTMTAAEANEIEDVWHLDLSSRWQLYRLWLQLYQADTRRKILSYERQYRTSA
       :::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS13 VKDELRKLNTMTAAEANEIEDVWQLDLSSRWQLYRLWLQLYQADTRRKILSYERQYRTSA
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA1 ERMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ERMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATL
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA1 SKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIA
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA1 RLLTPHIYQDLENHPSVLKYEKIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RLLTPHIYQDLENHPSVLKYEKIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVEL
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA1 CKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGVRVHVVDKYQGEENDIILLSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGVRVHVVDKYQGEENDIILLSLV
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA1 RSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLRENNQIGPML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLRENNQIGPML
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA1 RLCCQNHPETHTLVSKASDFQKVPEGGCSLPCEFRLGCGHVCTRACHPYDSSHKEFQCMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RLCCQNHPETHTLVSKASDFQKVPEGGCSLPCEFRLGCGHVCTRACHPYDSSHKEFQCMK
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KA1 PCQKVICQEGHRCPLVCFQECQPCQVKVPKIIPRCGHEQMVPCSVPESDFCCQEPCSKSL
       :::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
CCDS13 PCQKVICQEGHRCPLVCFQECQPCQVKVPKTIPRCGHEQMVPCSVPESDFCCQEPCSKSL
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
pF1KA1 RCGHRCSHPCGEDCVQLCSEMVTIKLKCGHSQPVKCGHVEGLLYGGLLVKCTTKCGTILD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RCGHRCSHPCGEDCVQLCSEMVTIKLKCGHSQPVKCGHVEGLLYGGLLVKCTTKCGTILD
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
pF1KA1 CGHPCPGSCHSCFEGRFHERCQQPCKRLLICSHKCQEPCIGECPPCQRTCQNRCVHSQCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CGHPCPGSCHSCFEGRFHERCQQPCKRLLICSHKCQEPCIGECPPCQRTCQNRCVHSQCK
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
pF1KA1 KKCGELCSPCVEPCVWRCQHYQCTKLCSEPCNRPPCYVPCTKLLVCGHPCIGLCGEPCPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KKCGELCSPCVEPCVWRCQHYQCTKLCSEPCNRPPCYVPCTKLLVCGHPCIGLCGEPCPK
             1510      1520      1530      1540      1550      1560

             1570      1580      1590      1600      1610      1620
pF1KA1 KCRICHMDEVTQIFFGFEDEPDARFVQLEDCSHIFEVQALDRYMNEQKDDEVAIRLKVCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KCRICHMDEVTQIFFGFEDEPDARFVQLEDCSHIFEVQALDRYMNEQKDDEVAIRLKVCP
             1570      1580      1590      1600      1610      1620

             1630      1640      1650      1660      1670      1680
pF1KA1 ICQVPIRKNLRYGTSIKQRLEEIEIIKEKIQGSAGEIATSQERLKALLERKSLLHQLLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ICQVPIRKNLRYGTSIKQRLEEIEIIKEKIQGSAGEIATSQERLKALLERKSLLHQLLPE
             1630      1640      1650      1660      1670      1680

             1690      1700      1710      1720      1730      1740
pF1KA1 DFLMLKEKLAQKNLSVKDLGLVENYISFYDHLASLWDSLKKMHVLEEKRVRTRLEQVHEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DFLMLKEKLAQKNLSVKDLGLVENYISFYDHLASLWDSLKKMHVLEEKRVRTRLEQVHEW
             1690      1700      1710      1720      1730      1740

             1750      1760      1770      1780      1790      1800
pF1KA1 LAKKRLSFTSQELSDLRSEIQRLTYLVNLLTRYKIAEKKVKDSIAVEVYSVQNILEKTCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LAKKRLSFTSQELSDLRSEIQRLTYLVNLLTRYKIAEKKVKDSIAVEVYSVQNILEKTCK
             1750      1760      1770      1780      1790      1800

             1810      1820      1830      1840      1850      1860
pF1KA1 FTQEDEQLVQEKMEALKATLPCSGLGISEEERVQIVSAIGYPRGHWFKCRNGHIYVIGDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FTQEDEQLVQEKMEALKATLPCSGLGISEEERVQIVSAIGYPRGHWFKCRNGHIYVIGDC
             1810      1820      1830      1840      1850      1860

             1870      1880      1890      1900      1910        
pF1KA1 GGAMERGTCPDCKEVIGGTNHTLERSNQLASEMDGAQHAAWSDTANNLMNFEEIQGMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GGAMERGTCPDCKEVIGGTNHTLERSNQLASEMDGAQHAAWSDTANNLMNFEEIQGMM
             1870      1880      1890      1900      1910        




1918 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:09:48 2016 done: Wed Nov  2 21:09:49 2016
 Total Scan time:  4.980 Total Display time:  0.150

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com