Result of GENSCAN for pF1KA1342
GENSCAN 1.0	Date run:  2-Nov-116	Time: 21:01:17

Sequence gi568815580r:43170344_43374395 : 204052 bp : 35.89% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   8663   8738   76  1  1   54   54    97 0.349   4.20
 1.02 Term +  24635  24759  125  0  2   36   41   142 0.236   1.87
 1.03 PlyA +  24981  24986    6                               1.05

 2.03 PlyA -  26085  26080    6                               1.05
 2.02 Term -  55707  55516  192  0  0   72   42   145 0.566   4.74
 2.01 Init -  71235  71185   51  0  0   68  103    19 0.401   2.61
 2.00 Prom -  73303  73264   40                              -3.25

 3.00 Prom +  81050  81089   40                              -5.75
 3.01 Init +  82134  82205   72  2  0   26   67   102 0.758   3.02
 3.02 Term +  83816  84031  216  1  0   58   40   153 0.831   3.66
 3.03 PlyA +  84282  84287    6                               1.05

 4.07 PlyA -  84385  84380    6                               1.05
 4.06 Term -  94520  94167  354  2  0   59   48   367 0.154  23.31
 4.05 Intr - 100305 100118  188  1  2   90   74   152 0.040  12.49
 4.04 Intr - 101489 101369  121  2  1   75  110    47 0.530   4.75
 4.03 Intr - 104020 103237  784  0  1    2   53   618 0.592  40.25
 4.02 Intr - 107064 106905  160  1  1  125   99   121 0.821  15.02
 4.01 Init - 111863 111788   76  2  1   52  103     9 0.362   0.10
 4.00 Prom - 113630 113591   40                              -7.55

 5.00 Prom + 113668 113707   40                              -9.05
 5.01 Sngl + 116615 116944  330  1  0   62   41   395 0.931  27.97
 5.02 PlyA + 117028 117033    6                               1.05

 6.00 Prom + 118027 118066   40                              -6.15
 6.01 Sngl + 118869 120497 1629  2  0   33   39   648 0.972  49.44
 6.02 PlyA + 121729 121734    6                               1.05

 7.02 PlyA - 122752 122747    6                               1.05
 7.01 Sngl - 128199 127729  471  0  0   42   38   201 0.559   6.37
 7.00 Prom - 139662 139623   40                              -4.05

 8.00 Prom + 147674 147713   40                              -4.05
 8.01 Sngl + 153898 154710  813  0  0   37   43   252 0.947  11.12
 8.02 PlyA + 155089 155094    6                               1.05

 9.04 PlyA - 155886 155881    6                               1.05
 9.03 Term - 167267 167035  233  0  2   62   42   148 0.448   3.25
 9.02 Intr - 180750 180550  201  1  0   68  107   150 0.535  13.24
 9.01 Init - 187727 187673   55  2  1  106   39    51 0.289   3.50
 9.00 Prom - 189416 189377   40                              -4.85

10.00 Prom + 190246 190285   40                              -8.35
10.01 Init + 191694 191976  283  2  1   30   73   315 0.707  21.45
10.02 Intr + 195431 195643  213  0  0  100   97    20 0.451   1.86
10.03 Term + 197761 197951  191  2  2   93   43    52 0.369  -2.17
10.04 PlyA + 198544 198549    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 100305  99998  308  1  2   90   39   259 0.853  15.49


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815580r:43170344_43374395|GENSCAN_predicted_peptide_1|66_aa
MDIIEREEIAGSDEDGKKRKPLYTVVVMEEEIEEEQKQEEKAETKIERRKLGTCNASTQK
QMLLEF

>gi568815580r:43170344_43374395|GENSCAN_predicted_CDS_1|201_bp
atggatattattgaaagagaagaaatagcaggttctgatgaagatgggaagaaaaggaaa
cccttgtacactgttgtggtgatggaggaggagatagaggaagaacaaaaacaagaagaa
aaagcagagacaaaaattgagagaagaaaattaggcacctgcaatgccagcacacagaaa
caaatgctgttagaattttga

>gi568815580r:43170344_43374395|GENSCAN_predicted_peptide_2|80_aa
MNHTDAKYFLLHRIMRQTMMPTLTIPLEVPTRATRQEKEIKGIQIGKKEVKLFASNVIGY
LENSSRVFSTPPESTPPESS

>gi568815580r:43170344_43374395|GENSCAN_predicted_CDS_2|243_bp
atgaatcatactgatgcaaaatactttctattgcatcgcatcatgagacagacaatgatg
cccactctcaccattcctcttgaagttccaaccagagcaaccagacaagagaaagaaata
aagggcatccaaatcggtaagaaggaagtcaaactgtttgctagcaatgtgattggttac
cttgaaaactcctccagagttttcagtactcctccagaaagtactcctccagaaagctcc
tag

>gi568815580r:43170344_43374395|GENSCAN_predicted_peptide_3|95_aa
MIEDQLRILEPEAFEEEFQLLIVTKEIRAMGINRLKVAEAGVQQSCLVEKDTEKTTRGNE
TAKPAGILVGRASKTEGEYLQESSMFDVSDKLQSL

>gi568815580r:43170344_43374395|GENSCAN_predicted_CDS_3|288_bp
atgatagaggatcaactgagaattctggaaccagaagcatttgaggaagaattccaacta
ctgattgtgactaaagaaataagagctatggggataaatagattgaaggtggcagaagct
ggggttcaacaaagttgccttgtagaaaaggacactgagaagacaaccagaggaaatgaa
acagcaaagcctgctggaattctagtggggagagcatccaagacagaaggggagtacctg
caagagagcagtatgtttgatgtttctgataagctgcaaagcctatag

>gi568815580r:43170344_43374395|GENSCAN_predicted_peptide_4|560_aa
MSTINSYVAVYFSSIFFTILLYAFDGAGALGSALLFSALRKPALEIQASESSQAVFPSAP
RTEHAVKNGSDHHQPGRICAFGLVFTVSLFAWICCQRKSSKSNKTPPYKFVHVLKGVDIY
PENLNSKKKFGADDKNEVKNKPAVPKNSLHLDLEKRDLNGNFPKTNLKPGSPSDLENATP
KLFLEGEKESVSPESLKSSTSLTSEEKQEKLGTLFFSLEYNFERKAFVVNIKEARGLPAM
DEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTIL
SFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIKRNVRKSSGRGELLISLCYQSTTNT
LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP
CEGLEDISVEFLVLDSERGSRNEDHNSSPAREQNRMENEFDKLTEIGFRRWAITNSSELK
EHALIQCKEAQNLAKRLDELLTRITSLEKNINDLMELKNTVRELCEAYTNINSQIYQEEE
RISEIEDNEIKQKEKMREIK

>gi568815580r:43170344_43374395|GENSCAN_predicted_CDS_4|1683_bp
atgtctacaattaacagttatgttgctgtatatttctcatcaatatttttcacaattttg
ctttacgcatttgatggagctggtgccctgggctctgcgctgttgttttcagcgctccga
aagccggcgcttgagatccaggcaagtgaatccagccaggcagttttcccttcagcacct
cggacagaacacgcagtaaaaaatggctccgatcaccaccagccgggaagaatttgtgca
tttggcctggtcttcacagtctctctctttgcatggatctgctgtcagagaaaatcatcc
aagtctaacaagactcctccatacaagtttgtgcatgtgcttaagggagttgatatttac
cctgaaaacctaaatagcaaaaagaagtttggagcagatgataaaaatgaagtaaagaat
aagccagctgtgccaaagaattcattgcatctggatcttgaaaagagagatctcaatggc
aattttcccaaaaccaacctcaaacctggcagtccttctgatctggagaatgcaaccccg
aagctctttttagaaggggaaaaagagtcagtttcccctgagagtttaaagtccagcact
tcccttacttcagaagagaaacaagagaagctgggaactctcttcttctccttagaatac
aacttcgagagaaaagcatttgtggtcaatatcaaggaagcccgtggcttgccagccatg
gatgagcagtcgatgacctctgacccatatatcaaaatgacgatcctcccagagaagaag
cataaagtgaaaactagagtgctgagaaaaaccttggatccagcttttgatgagaccttt
acattctatgggataccctacacccaaatccaagaattggccttgcacttcacaattttg
agttttgacaggttttcaagagatgatatcattggggaagttctaattcctctctcggga
attgaattatctgaaggaaaaatgttaatgaatagagagatcatcaagagaaatgttagg
aagtcttcaggacggggtgagttactgatctctctctgctatcagtccaccacaaacact
ctaactgtggttgtcttaaaagctcgacatctgcctaaatctgatgtgtccggactttca
gatccctatgtcaaagtgaacctgtaccatgccaaaaagagaatctccaagaagaagact
catgtgaagaaatgcacccccaatgcagtgttcaatgagctgtttgtctttgatattcct
tgtgagggccttgaagatataagtgttgaatttttggttttggattctgaaagggggtcc
cgaaatgaggatcacaattcctcgccagcaagggaacaaaacaggatggagaatgagttt
gacaaattgacagaaataggcttccgaaggtgggcaataacaaactcctccgagctaaag
gagcatgctctaatccaatgcaaggaagctcagaaccttgcaaaaaggttagacgaattg
ctaactagaataaccagtttagagaagaacataaatgacctgatggagctgaaaaacaca
gtacgagaactttgtgaagcatacacaaatatcaatagccaaatctatcaagaggaagaa
aggatatcagagattgaagataatgaaataaagcagaaagaaaagatgagagaaataaaa
tga

>gi568815580r:43170344_43374395|GENSCAN_predicted_peptide_5|109_aa
MGKRQSRKTGNSKNQSASPPPKECSSSPAMEQSWMENDFDEFREEGFRRSNYSELQEEIR
TNGKEVKSFEKKLDEWITRITNAEKSLKDLMELKTKARELHDECTSLSS

>gi568815580r:43170344_43374395|GENSCAN_predicted_CDS_5|330_bp
atgggaaaaagacagagcagaaaaactggaaactctaaaaatcagagtgcctctcctcct
ccaaaggaatgcagctcctcaccagcaatggaacaaagctggatggagaatgactttgat
gagttcagagaagaaggcttcagacgatcaaactactctgagctacaggaggaaattcga
accaacggcaaagaagttaaaagctttgaaaaaaaattagacgaatggataactagaata
accaatgcagagaagtccttaaaggacctgatggagctgaaaaccaaggctcgagagcta
catgatgaatgcacaagcctcagtagctga

>gi568815580r:43170344_43374395|GENSCAN_predicted_peptide_6|542_aa
MKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEEMHKFLDTYILPRLNQEEVESLNRP
ITGSEIEAIINSLPTKKSPGPDGFTAEFYKRYKEEMVPFLLKLFQSIEKEGILPNSLYEA
SIILIPKPGRDTTKRDNFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQC
WFNICKSINIIQHINRIKDKNHMIISIDAEKAFDKIQQLFMLKTRNKLGIGGTYLKIITA
IYDKPTANIILNGQKLEAFPLKMGTREGCLLSPLLFNIVLEVLARAIRQEKEIKGIQLGK
EEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLCTNNRQTESQ
IMSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWVGRINI
VTMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRAHIAKSIVSQKNKAGGITL
PDFKLYYKAAVTKTAWYWYQNRDIDQWNRTEPSEIMLHIYKYLIFDKPEKNKQWGKDSLF
NK

>gi568815580r:43170344_43374395|GENSCAN_predicted_CDS_6|1629_bp
atgaaaaatgataaaggggatatcaccaccgatcccacagaaatacaaactaccatcaga
gaatactataaacacctctatgcaaataaactagaaaatctagaagaaatgcataaattc
ctcgacacatacatcctcccaagactaaaccaggaagaagttgaatctctgaatagacca
ataacaggctctgaaattgaggcaataatcaatagcttaccaaccaaaaaaagtccagga
ccagatggattcacagccgaattctacaagaggtacaaagaggagatggtaccatttctt
ctgaaactattccagtcaatagaaaaagagggaatcctccctaactcactttatgaggcc
agcatcatcttgataccaaagccgggcagagacacaaccaaaagagataattttagacca
atatccttaatgaatatcgatgcaaaaatcctcaataaaatactggcaaacagaatccag
cagcacatcaaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaatgc
tggttcaacatatgcaaatcaataaatataatccagcatataaacagaatcaaagacaaa
aaccacatgattatctcaatagatgccgaaaaggcctttgacaaaattcaacaactcttc
atgctaaaaactcgcaataaattaggtattggtgggacgtatctcaaaataataacagct
atctatgacaaacccacagccaatatcatactgaatgggcaaaaactggaagcattccct
ttgaaaatgggcacaagagagggatgccttctctcaccactcctattcaacatagtgttg
gaagttctggccagggcaatcaggcaggagaaggaaataaagggtattcaattaggaaaa
gaagaagtcaaattgtccctgtttgcagatgacatgattgtatatctagaaaaccccatt
gtctcagcccaaaatctcctcaagctgataagcaacttcagcaaagtctcaggatacaaa
atcaatgtacaaaaatcacaagcattcttatgcaccaataacagacaaacagagagccaa
atcatgagtgaactcccattcacaattgcttcaaagaggataaaatacctaggaatccaa
cttacaagggacgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaata
aaagaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatt
gtgacaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagcta
ccaatgactttcttcacagaattggaaaaaaccactttaaagttcatatggaaccaaaaa
agagcccacattgccaagtcaatcgtaagccaaaagaacaaagctggaggcatcacgcta
cctgacttcaaactatactacaaggctgcagtaaccaaaacagcatggtactggtaccaa
aacagagatatagaccaatggaacagaacagagccctcagaaataatgctgcatatctac
aagtatctgatctttgacaaacctgagaaaaacaagcaatggggaaaggattccctattt
aataaatag

>gi568815580r:43170344_43374395|GENSCAN_predicted_peptide_7|156_aa
MIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNGQKLEAFPLK
TGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVS
AQNLLKLISNFSKVSGYKINVQKSQAFLYTNNRQTE

>gi568815580r:43170344_43374395|GENSCAN_predicted_CDS_7|471_bp
atgattatctcaatagatgcagaaaaagcctttgacaaaattcaacaacccttcatgcta
aaaactctcaataaattaggtattgatgggacgtatttcaaaataataagagctatctat
gacaaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaa
actggcacaagacagggatgccctctctcaccgctcctattcaatatagtgttggaagtt
ctggccagggcaatcaggcaggagaaggaaataaagggtattcaattaggaaaagaggaa
gtcaaattgtccctgtttgcagatgacatgattgtttatctagaaaaccccatcgtctca
gcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaat
gtacaaaaatcacaagcattcttatacaccaacaacagacaaacagagtaa

>gi568815580r:43170344_43374395|GENSCAN_predicted_peptide_8|270_aa
MNIDAKILNKILAKRIQQHIKKLIHHDQVGFIPGMQGWFNIHKSINVIQHINRTKDKNHM
IISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNGQKLEAFPLKT
GTRQGCPLSSLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLCADDMIVYLENPIVSA
QNLLKLISNFSKVSGYKINVLKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTR
DVKDLFKENYKPLLNEIKEDTNKWKNFPCS

>gi568815580r:43170344_43374395|GENSCAN_predicted_CDS_8|813_bp
atgaacattgatgcaaaaatcctcaataaaatactggcaaaacggatccagcagcacatc
aaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaac
atacacaaatcaataaatgtaatccagcatataaacagaaccaaagacaaaaaccacatg
attatctcaatagatgcagaaaaagcctttgacaaaattcaacaacccttcatgctaaaa
actctcaataaattaggtattgatgggacgtatttcaaaataataagagctatctatgac
aaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaaact
ggcacaagacagggatgccctctctcatcactcctattcaacatagtgttggaagttctg
gccagggcaattaggcaggagaaggaaataaagggtattcaattaggaaaagaagaagtc
aaattgtccctgtgtgcagacgacatgattgtatatctagaaaaccccattgtctcagcc
caaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgta
ctaaaatcacaagcattcttatacaccaataacagacaaacagagagccaaatcatgagt
gaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttacaagg
gatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaagaggat
acaaacaaatggaagaactttccatgctcatag

>gi568815580r:43170344_43374395|GENSCAN_predicted_peptide_9|162_aa
MEMLDELPLFNSEDLTIVFFHGHETMNLLGITPDERGCFSLSKPLSSFKALDENNDQAEI
DLNCFKDLTSIPKYISSGGTFWSHSVLEVLAREIREEKEINGIQISKEKMKLSLFADDMV
VYLENPKDSSRKLLELIKEFSKVSRYKINVHKSVALLYTNND

>gi568815580r:43170344_43374395|GENSCAN_predicted_CDS_9|489_bp
atggagatgcttgatgagcttccattgttcaactccgaggatcttaccattgtctttttc
catggccatgagacaatgaatcttctgggtatcaccccagatgaacgaggctgcttcagt
ttgagtaaaccactgtcttccttcaaggccctggatgaaaacaatgatcaagcagaaata
gatcttaactgctttaaagacttaacttcaattccaaaatacatctctagtggaggaacc
ttttggtctcattctgtactggaagtcctagccagagaaatcagagaagagaaagaaata
aatggcatccaaatcagtaaagagaaaatgaaactatcattgtttgctgacgatatggtc
gtttaccttgaaaacccaaaggactcctccagaaagctcctagaactgataaaagaattc
agcaaagtttccagatacaagatcaatgtacacaaatcagtagctcttctatacaccaac
aatgactaa

>gi568815580r:43170344_43374395|GENSCAN_predicted_peptide_10|228_aa
MSESLKTREADSAALSLQPKAQGPQGRCWHKFQSQRLKILESDVQGQEEWKEANILHVKK
KEPEDSACKLISSSPAFFVPAALVANWMMPTHIEGKEGEKKGERKVGRREEENKEKRREA
EREKERKGESEGGGREGKERQQEGMKGRKKDGRGREGGDLGWRKKETGKSKSYWARCSTK
VYMKAKSQQETTFFTRRPSNVKLHQLLTCLLFQMRTNGFISYSSCSKH

>gi568815580r:43170344_43374395|GENSCAN_predicted_CDS_10|687_bp
atgtccgaaagcctcaaaaccagggaagctgacagtgcagccttaagtctgcagccgaag
gcccaagggccccagggaagatgctggcacaagtttcagagccagcgtctgaagatcctg
gagtctgatgtccaagggcaggaagagtggaaagaagcaaacatcctgcacgtgaagaag
aaagagccagaagactcagcatgcaaacttatctcatcttctcctgctttctttgttcca
gctgcattggtagccaattggatgatgcccacccacattgagggaaaggagggagagaag
aagggagagagaaaggtaggaaggagggaagaagagaacaaagaaaaaagaagggaagca
gaaagggagaaagaaagaaagggagagagtgagggaggagggagggaaggaaaggaaaga
cagcaggaaggaatgaaaggaagaaagaaggatgggagagggagggagggaggggacctg
ggatggaggaagaaagaaacaggaaaaagcaagagctactgggcaaggtgtagtacaaag
gtatacatgaaagctaagagtcaacaagaaactacgtttttcactagaaggccttctaat
gtgaagttacaccaactgctgacatgccttctcttccaaatgcgtaccaatgggtttatt
tcctattcaagttgcagcaagcattaa
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com