Result of FASTA (omim) for pF1KA1254
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1254, 757 aa
  1>>>pF1KA1254 757 - 757 aa - 757 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.6618+/-0.000541; mu= -5.1212+/- 0.033
 mean_var=367.4664+/-74.278, 0's: 0 Z-trim(116.9): 21  B-trim: 26 in 1/55
 Lambda= 0.066906
 statistics sampled from 28460 (28480) to 28460 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.334), width:  16
 Scan time:  9.370

The best scores are:                                      opt bits E(85289)
NP_004739 (OMIM: 611326) cell cycle progression pr ( 757) 4961 494.1 9.1e-139
NP_065790 (OMIM: 611326) cell cycle progression pr ( 757) 4961 494.1 9.1e-139
NP_001191379 (OMIM: 611326) cell cycle progression ( 807) 4869 485.2 4.5e-136
NP_001191380 (OMIM: 611326) cell cycle progression ( 424) 1996 207.6 8.5e-53


>>NP_004739 (OMIM: 611326) cell cycle progression protei  (757 aa)
 initn: 4961 init1: 4961 opt: 4961  Z-score: 2612.3  bits: 494.1 E(85289): 9.1e-139
Smith-Waterman score: 4961; 99.9% identity (100.0% similar) in 757 aa overlap (1-757:1-757)

               10        20        30        40        50        60
pF1KA1 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 RKKTVSASESEDRLVGEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
       :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_004 RKKTVSASESEDRLVAEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 EKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 KKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 SKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 KNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHF
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 KEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQII
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 QRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDG
              670       680       690       700       710       720

              730       740       750       
pF1KA1 VFEKLDEYIYRHFFGHTFSPPYGPRSVYIKPCHYSSL
       :::::::::::::::::::::::::::::::::::::
NP_004 VFEKLDEYIYRHFFGHTFSPPYGPRSVYIKPCHYSSL
              730       740       750       

>>NP_065790 (OMIM: 611326) cell cycle progression protei  (757 aa)
 initn: 4961 init1: 4961 opt: 4961  Z-score: 2612.3  bits: 494.1 E(85289): 9.1e-139
Smith-Waterman score: 4961; 99.9% identity (100.0% similar) in 757 aa overlap (1-757:1-757)

               10        20        30        40        50        60
pF1KA1 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 RKKTVSASESEDRLVGEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
       :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_065 RKKTVSASESEDRLVAEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 EKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 EKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 KKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 KKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 SKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 SKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 KNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 KNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHF
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 KEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 KEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQII
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 QRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 QRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDG
              670       680       690       700       710       720

              730       740       750       
pF1KA1 VFEKLDEYIYRHFFGHTFSPPYGPRSVYIKPCHYSSL
       :::::::::::::::::::::::::::::::::::::
NP_065 VFEKLDEYIYRHFFGHTFSPPYGPRSVYIKPCHYSSL
              730       740       750       

>>NP_001191379 (OMIM: 611326) cell cycle progression pro  (807 aa)
 initn: 4869 init1: 4869 opt: 4869  Z-score: 2564.0  bits: 485.2 E(85289): 4.5e-136
Smith-Waterman score: 4869; 99.9% identity (100.0% similar) in 744 aa overlap (1-744:1-744)

               10        20        30        40        50        60
pF1KA1 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 RKKTVSASESEDRLVGEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
       :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKKTVSASESEDRLVAEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 EKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKQKKHSFLSQRETLLTEAKMLKRELERERLVTTALRGELQQLSGSQLHGKSDSPNVYTE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 KKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKEIAILRERLTELERKLTFEQQRSDLWERLYVEAKDQNGKQGTDGKKKGGRGSHRAKNK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 SKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 KNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KNIFDEKGNKRFGATKEAAEKPRTVFSDYLHPQYKAPTENHHNRGPTMQNDGRKEKPVHF
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 KEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEFRKNTNSKKCSPGHDCRENSHSFRKACSGVFDCAQQESMSLFNTVVNPIRMDEFRQII
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 QRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRYMLKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDG
              670       680       690       700       710       720

              730       740       750                              
pF1KA1 VFEKLDEYIYRHFFGHTFSPPYGPRSVYIKPCHYSSL                       
       ::::::::::::::::::::::::                                    
NP_001 VFEKLDEYIYRHFFGHTFSPPYGPSRPDKKQRMVNIENSRHRKQEQKHLQPQPYKREGKW
              730       740       750       760       770       780

>>NP_001191380 (OMIM: 611326) cell cycle progression pro  (424 aa)
 initn: 1996 init1: 1996 opt: 1996  Z-score: 1068.8  bits: 207.6 E(85289): 8.5e-53
Smith-Waterman score: 1996; 99.7% identity (100.0% similar) in 311 aa overlap (1-311:1-311)

               10        20        30        40        50        60
pF1KA1 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSENSSDSDSSCGWTVISHEGSDIEMLNSVTPTDSCEPAPECSSLEQEELQALQIEQGES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQNGTVLMEETAYPALEETSSTIEAEEQKIPEDSIYIGTASDDSDIVTLEPPKLEEIGNQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVVIVEEAQSSEDFNMGSSSSSQYTFCQPETVFSSQPSDDESSSDETSNQPSPAFRRRRA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 RKKTVSASESEDRLVGEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
       :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKKTVSASESEDRLVAEQETEPSKELSKRQFSSGLNKCVILALVIAISMGFGHFYGTIQI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKRQQLVRKIHEDELNDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 TNLATENQYLRVSLEKEEKALSSLQEELNKLREQIRILEDKGTSTELVKENQKLKQHLEE
       :::::::::::                                                 
NP_001 TNLATENQYLRKLFTDFVNDVKDYLRNMKEYEVDNDGVFEKLDEYIYRHFFGHTFSPPYG
              310       320       330       340       350       360

>--
 initn: 355 init1: 355 opt: 355  Z-score: 212.8  bits: 49.2 E(85289): 4.1e-05
Smith-Waterman score: 355; 100.0% identity (100.0% similar) in 50 aa overlap (695-744:312-361)

          670       680       690       700       710       720    
pF1KA1 LKELDTFCHWNELDQFINKFFLNGVFIHDQKLFTDFVNDVKDYLRNMKEYEVDNDGVFEK
                                     ::::::::::::::::::::::::::::::
NP_001 LARCWTLTEAEKMSFETQKTNLATENQYLRKLFTDFVNDVKDYLRNMKEYEVDNDGVFEK
             290       300       310       320       330       340 

          730       740       750                                  
pF1KA1 LDEYIYRHFFGHTFSPPYGPRSVYIKPCHYSSL                           
       ::::::::::::::::::::                                        
NP_001 LDEYIYRHFFGHTFSPPYGPSRPDKKQRMVNIENSRHRKQEQKHLQPQPYKREGKWHKYG
             350       360       370       380       390       400 




757 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:51:19 2016 done: Wed Nov  2 20:51:21 2016
 Total Scan time:  9.370 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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