FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1191, 305 aa
  1>>>pF1KA1191 305 - 305 aa - 305 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0873+/-0.000714; mu= 4.1174+/- 0.043
 mean_var=139.4001+/-28.028, 0's: 0 Z-trim(114.4): 11  B-trim: 0 in 0/52
 Lambda= 0.108628
 statistics sampled from 14962 (14967) to 14962 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.46), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS4399.1 KIAA1191 gene_id:57179|Hs108|chr5       ( 305) 2037 329.8 1.6e-90
CCDS43402.1 KIAA1191 gene_id:57179|Hs108|chr5      ( 286) 1915 310.7 8.6e-85
CCDS75373.1 KIAA1191 gene_id:57179|Hs108|chr5      ( 224) 1483 242.9 1.7e-64


>>CCDS4399.1 KIAA1191 gene_id:57179|Hs108|chr5            (305 aa)
 initn: 2037 init1: 2037 opt: 2037  Z-score: 1738.7  bits: 329.8 E(32554): 1.6e-90
Smith-Waterman score: 2037; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)

               10        20        30        40        50        60
pF1KA1 MASRQPEVPALEASAPLGKMSLPIGIYRRAVSYDDTLEDPAPMTPPPSDMGSVPWKPVIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MASRQPEVPALEASAPLGKMSLPIGIYRRAVSYDDTLEDPAPMTPPPSDMGSVPWKPVIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 ERKYQHLAKVEEGEASLPSPAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ERKYQHLAKVEEGEASLPSPAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 FERQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FERQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 HSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 TQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVL
              250       260       270       280       290       300

            
pF1KA1 TPTGF
       :::::
CCDS43 TPTGF
            

>>CCDS43402.1 KIAA1191 gene_id:57179|Hs108|chr5           (286 aa)
 initn: 1915 init1: 1915 opt: 1915  Z-score: 1635.8  bits: 310.7 E(32554): 8.6e-85
Smith-Waterman score: 1915; 100.0% identity (100.0% similar) in 286 aa overlap (20-305:1-286)

               10        20        30        40        50        60
pF1KA1 MASRQPEVPALEASAPLGKMSLPIGIYRRAVSYDDTLEDPAPMTPPPSDMGSVPWKPVIP
                          :::::::::::::::::::::::::::::::::::::::::
CCDS43                    MSLPIGIYRRAVSYDDTLEDPAPMTPPPSDMGSVPWKPVIP
                                  10        20        30        40 

               70        80        90       100       110       120
pF1KA1 ERKYQHLAKVEEGEASLPSPAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ERKYQHLAKVEEGEASLPSPAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQH
              50        60        70        80        90       100 

              130       140       150       160       170       180
pF1KA1 FERQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FERQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTP
             110       120       130       140       150       160 

              190       200       210       220       230       240
pF1KA1 HSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFA
             170       180       190       200       210       220 

              250       260       270       280       290       300
pF1KA1 TQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVL
             230       240       250       260       270       280 

            
pF1KA1 TPTGF
       :::::
CCDS43 TPTGF
            

>>CCDS75373.1 KIAA1191 gene_id:57179|Hs108|chr5           (224 aa)
 initn: 1483 init1: 1483 opt: 1483  Z-score: 1271.6  bits: 242.9 E(32554): 1.7e-64
Smith-Waterman score: 1483; 100.0% identity (100.0% similar) in 224 aa overlap (82-305:1-224)

              60        70        80        90       100       110 
pF1KA1 SVPWKPVIPERKYQHLAKVEEGEASLPSPAMTLSSAIDSVDKVPVVKAKATHVIMNSLIT
                                     ::::::::::::::::::::::::::::::
CCDS75                               MTLSSAIDSVDKVPVVKAKATHVIMNSLIT
                                             10        20        30

             120       130       140       150       160       170 
pF1KA1 KQTQESIQHFERQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KQTQESIQHFERQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPAS
               40        50        60        70        80        90

             180       190       200       210       220       230 
pF1KA1 AQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSL
              100       110       120       130       140       150

             240       250       260       270       280       290 
pF1KA1 QKYDSGSFATQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QKYDSGSFATQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHN
              160       170       180       190       200       210

             300     
pF1KA1 LKPRDLNVLTPTGF
       ::::::::::::::
CCDS75 LKPRDLNVLTPTGF
              220    




305 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:44:38 2016 done: Wed Nov  2 20:44:38 2016
 Total Scan time:  2.610 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]