Result of FASTA (ccds) for pF1KA1179
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1179, 1749 aa
  1>>>pF1KA1179 1749 - 1749 aa - 1749 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5227+/-0.00127; mu= 18.1085+/- 0.077
 mean_var=76.8004+/-15.526, 0's: 0 Z-trim(100.0): 46  B-trim: 13 in 1/49
 Lambda= 0.146350
 statistics sampled from 5912 (5934) to 5912 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.509), E-opt: 0.2 (0.182), width:  16
 Scan time:  3.720

The best scores are:                                      opt bits E(32554)
CCDS1755.1 IFT172 gene_id:26160|Hs108|chr2         (1749) 11586 2457.0       0


>>CCDS1755.1 IFT172 gene_id:26160|Hs108|chr2              (1749 aa)
 initn: 11586 init1: 11586 opt: 11586  Z-score: 13207.7  bits: 2457.0 E(32554):    0
Smith-Waterman score: 11586; 100.0% identity (100.0% similar) in 1749 aa overlap (1-1749:1-1749)

               10        20        30        40        50        60
pF1KA1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 KYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 KYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 PAEYIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PAEYIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 FDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 FDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 REFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 REFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 LCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 KILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 KILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 EYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 EYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 TVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 TVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 QNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 QNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 TAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 TAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 HETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 HETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHR
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 WDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQESQGDGLAAISLYLKAGLPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 WDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQESQGDGLAAISLYLKAGLPA
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 KAARLVLTREELLANTELVEHITAALIKGELYERAGDLFEKIHNPQKALECYRKGNAFMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 KAARLVLTREELLANTELVEHITAALIKGELYERAGDLFEKIHNPQKALECYRKGNAFMK
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 AVELARLAFPVEVVKLEEAWGDHLVQQKQLDAAINHYIEARCSIKAIEAALGARQWKKAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 AVELARLAFPVEVVKLEEAWGDHLVQQKQLDAAINHYIEARCSIKAIEAALGARQWKKAI
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 YILDLQDRNTASKYYPLVAQHYASLQEYEIAEELYTKGDRTKDAIDMYTQAGRWEQAHKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 YILDLQDRNTASKYYPLVAQHYASLQEYEIAEELYTKGDRTKDAIDMYTQAGRWEQAHKL
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA1 AMKCMRPEDVSVLYITQAQEMEKQGKYREAERLYVTVQEPDLAITMYKKHKLYDDMIRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 AMKCMRPEDVSVLYITQAQEMEKQGKYREAERLYVTVQEPDLAITMYKKHKLYDDMIRLV
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA1 GKHHPDLLSDTHLHLGKELEAEGRLQEAEYHYLEAQEWKATVNMYRASGLWEEAYRVART
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 GKHHPDLLSDTHLHLGKELEAEGRLQEAEYHYLEAQEWKATVNMYRASGLWEEAYRVART
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA1 QGGANAHKHVAYLWAKSLGGEAAVRLLNKLGLLEAAVDHAADNCSFEFAFELSRLALKHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 QGGANAHKHVAYLWAKSLGGEAAVRLLNKLGLLEAAVDHAADNCSFEFAFELSRLALKHK
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA1 TPEVHLKYAMFLEDEGKFEEAEAEFIRAGKPKEAVLMFVHNQDWEAAQRVAEAHDPDSVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 TPEVHLKYAMFLEDEGKFEEAEAEFIRAGKPKEAVLMFVHNQDWEAAQRVAEAHDPDSVA
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA1 EVLVGQARGALEEKDFQKAEGLLLRAQRPGLALNYYKEAGLWSDALRICKDYVPSQLEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 EVLVGQARGALEEKDFQKAEGLLLRAQRPGLALNYYKEAGLWSDALRICKDYVPSQLEAL
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA1 QEEYEREATKKGARGVEGFVEQARHWEQAGEYSRAVDCYLKVRDSGNSGLAEKCWMKAAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 QEEYEREATKKGARGVEGFVEQARHWEQAGEYSRAVDCYLKVRDSGNSGLAEKCWMKAAE
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KA1 LSIKFLPPQRNMEVVLAVGPQLIGIGKHSAAAELYLNLDLVKEAIDAFIEGEEWNKAKRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LSIKFLPPQRNMEVVLAVGPQLIGIGKHSAAAELYLNLDLVKEAIDAFIEGEEWNKAKRV
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
pF1KA1 AKELDPRYEDYVDQHYKEFLKNQGKVDSLVGVDVIAALDLYVEQGQWDKCIETATKQNYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 AKELDPRYEDYVDQHYKEFLKNQGKVDSLVGVDVIAALDLYVEQGQWDKCIETATKQNYK
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
pF1KA1 ILHKYVALYATHLIREGSSAQALALYVQHGAPANPQNFNIYKRIFTDMVSSPGTNCAEAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 ILHKYVALYATHLIREGSSAQALALYVQHGAPANPQNFNIYKRIFTDMVSSPGTNCAEAY
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
pF1KA1 HSWADLRDVLFNLCENLVKSSEANSPAHEEFKTMLLIAHYYATRSAAQSVKQLETVAARL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 HSWADLRDVLFNLCENLVKSSEANSPAHEEFKTMLLIAHYYATRSAAQSVKQLETVAARL
             1510      1520      1530      1540      1550      1560

             1570      1580      1590      1600      1610      1620
pF1KA1 SVSLLRHTQLLPVDKAFYEAGIAAKAVGWDNMAFIFLNRFLDLTDAIEEGTLDGLDHSDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SVSLLRHTQLLPVDKAFYEAGIAAKAVGWDNMAFIFLNRFLDLTDAIEEGTLDGLDHSDF
             1570      1580      1590      1600      1610      1620

             1630      1640      1650      1660      1670      1680
pF1KA1 QDTDIPFEVPLPAKQHVPEAEREEVRDWVLTVSMDQRLEQVLPRDERGAYEASLVAASTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 QDTDIPFEVPLPAKQHVPEAEREEVRDWVLTVSMDQRLEQVLPRDERGAYEASLVAASTG
             1630      1640      1650      1660      1670      1680

             1690      1700      1710      1720      1730      1740
pF1KA1 VRALPCLITGYPILRNKIEFKRPGKAANKDNWNKFLMAIKTSHSPVCQDVLKFISQWCGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 VRALPCLITGYPILRNKIEFKRPGKAANKDNWNKFLMAIKTSHSPVCQDVLKFISQWCGG
             1690      1700      1710      1720      1730      1740

                
pF1KA1 LPSTSFSFQ
       :::::::::
CCDS17 LPSTSFSFQ
                




1749 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:42:01 2016 done: Wed Nov  2 20:42:02 2016
 Total Scan time:  3.720 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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