Result of FASTA (ccds) for pF1KA1012
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1012, 1435 aa
  1>>>pF1KA1012 1435 - 1435 aa - 1435 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9193+/-0.00108; mu= 19.6593+/- 0.065
 mean_var=69.0955+/-13.750, 0's: 0 Z-trim(103.1): 23  B-trim: 0 in 0/51
 Lambda= 0.154294
 statistics sampled from 7228 (7232) to 7228 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.571), E-opt: 0.2 (0.222), width:  16
 Scan time:  4.490

The best scores are:                                      opt bits E(32554)
CCDS11901.1 TRAPPC8 gene_id:22878|Hs108|chr18      (1435) 9463 2116.5       0


>>CCDS11901.1 TRAPPC8 gene_id:22878|Hs108|chr18           (1435 aa)
 initn: 9463 init1: 9463 opt: 9463  Z-score: 11370.6  bits: 2116.5 E(32554):    0
Smith-Waterman score: 9463; 99.9% identity (99.9% similar) in 1435 aa overlap (1-1435:1-1435)

               10        20        30        40        50        60
pF1KA1 MAQCVQSVQELIPDSFVPCVAALCSDEAERLTRLNHLSFAELLKPFSRLTSEVHMRDPNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAQCVQSVQELIPDSFVPCVAALCSDEAERLTRLNHLSFAELLKPFSRLTSEVHMRDPNN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 QLHVIKNLKIAVSNIVTQPPQPGAIRKLLNDVVSGSQPAEGLVANVITAGDYDLNISATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLHVIKNLKIAVSNIVTQPPQPGAIRKLLNDVVSGSQPAEGLVANVITAGDYDLNISATT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 PWFESYRETFLQSMPASDHEFLNHYLACMLVASSSEAEPVEQFSKLSQEQHRIQHNSDYS
       :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS11 PWFESYRETFLQSMPALDHEFLNHYLACMLVASSSEAEPVEQFSKLSQEQHRIQHNSDYS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 YPKWFIPNTLKYYVLLHDVSAGDEQRAESIYEEMKQKYGTQGCYLLKINSRTSNRASDEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YPKWFIPNTLKYYVLLHDVSAGDEQRAESIYEEMKQKYGTQGCYLLKINSRTSNRASDEQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 IPDPWSQYLQKNSIQNQESYEDGPCTITSNKNSDNNLLSLDGLDNEVKDGLPNNFRAHPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IPDPWSQYLQKNSIQNQESYEDGPCTITSNKNSDNNLLSLDGLDNEVKDGLPNNFRAHPL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 QLEQSSDPSNSIDGPDHLRSASSLHETKKGNTGIIHGACLTLTDHDRIRQFIQEFTFRGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLEQSSDPSNSIDGPDHLRSASSLHETKKGNTGIIHGACLTLTDHDRIRQFIQEFTFRGL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 LPHIEKTIRQLNDQLISRKGLSRSLFSATKKWFSGSKVPEKSINDLKNTSGLLYPPEAPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LPHIEKTIRQLNDQLISRKGLSRSLFSATKKWFSGSKVPEKSINDLKNTSGLLYPPEAPE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 LQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQAMLYAAGALEMAAVSAFLQPGAPRPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQAMLYAAGALEMAAVSAFLQPGAPRPY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 PAHYMDTAIQTYRDICKNMVLAERCVLLSAELLKSQSKYSEAAALLIRLTSEDSDLRSAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PAHYMDTAIQTYRDICKNMVLAERCVLLSAELLKSQSKYSEAAALLIRLTSEDSDLRSAL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 LLEQAAHCFINMKSPMVRKYAFHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LLEQAAHCFINMKSPMVRKYAFHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 DHINFTIGRQSYTLRQLDNAVSAFRHILINESKQSAAQQGAFLREYLYVYKNVSQLSPDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DHINFTIGRQSYTLRQLDNAVSAFRHILINESKQSAAQQGAFLREYLYVYKNVSQLSPDG
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 PLPQLPLPYINSSATRVFFGHDRRPADGEKQAATHVSLDQEYDSESSQQWRELEEQVVSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PLPQLPLPYINSSATRVFFGHDRRPADGEKQAATHVSLDQEYDSESSQQWRELEEQVVSV
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 VNKGVIPSNFHPTQYCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKVLLLLTDLSLLWKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VNKGVIPSNFHPTQYCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKVLLLLTDLSLLWKF
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 HPKDFSGKDNEEVKQLVTSEPEMIGAEVISEFLINGEESKVARLKLFPHHIGELHILGVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HPKDFSGKDNEEVKQLVTSEPEMIGAEVISEFLINGEESKVARLKLFPHHIGELHILGVV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 YNLGTIQGSMTVDGIGALPGCHTGKYSLSMSVRGKQDLEIQGPRLNNTKEEKTSVKYGPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YNLGTIQGSMTVDGIGALPGCHTGKYSLSMSVRGKQDLEIQGPRLNNTKEEKTSVKYGPD
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 RRLDPIITEEMPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RRLDPIITEEMPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTF
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA1 GGNTAVLTPLSPSASENCSAYKTVVTDATSVCTALISSASSVDFGIGTGSQPEVIPVPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GGNTAVLTPLSPSASENCSAYKTVVTDATSVCTALISSASSVDFGIGTGSQPEVIPVPLP
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA1 DTVLLPGASVQLPMWLRGPDEEGVHEINFLFYYESVKKQPKIRHRILRHTAIICTSRSLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DTVLLPGASVQLPMWLRGPDEEGVHEINFLFYYESVKKQPKIRHRILRHTAIICTSRSLN
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA1 VRATVCRSNSLENEEGRGGNMLVFVDVENTNTSEAGVKEFHIVQVSSSSKHWKLQKSVNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VRATVCRSNSLENEEGRGGNMLVFVDVENTNTSEAGVKEFHIVQVSSSSKHWKLQKSVNL
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA1 SENKDAKLASREKGKFCFKAIRCEKEEAATQSSEKYTFADIIFGNEQIISSASPCADFFY
       :::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SENKDTKLASREKGKFCFKAIRCEKEEAATQSSEKYTFADIIFGNEQIISSASPCADFFY
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA1 RSLSSELKKPQAHLPVHTEKQSTEDAVRLIQKCSEVDLNIVILWKAYVVEDSKQLILEGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RSLSSELKKPQAHLPVHTEKQSTEDAVRLIQKCSEVDLNIVILWKAYVVEDSKQLILEGQ
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA1 HHVILRTIGKEAFSYPQKQEPPEMELLKFFRPENITVSSRPSVEQLSSLIKTSLHYPESF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HHVILRTIGKEAFSYPQKQEPPEMELLKFFRPENITVSSRPSVEQLSSLIKTSLHYPESF
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KA1 NHPFHQKSLCLVPVTLLLSNCSKADVDVIVDLRHKTTSPEALEIHGSFTWLGQTQYKLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NHPFHQKSLCLVPVTLLLSNCSKADVDVIVDLRHKTTSPEALEIHGSFTWLGQTQYKLQL
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430     
pF1KA1 KSQEIHSLQLKACFVHTGVYNLGTPRVFAKLSDQVTVFETSQQNSMPALIIISNV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KSQEIHSLQLKACFVHTGVYNLGTPRVFAKLSDQVTVFETSQQNSMPALIIISNV
             1390      1400      1410      1420      1430     




1435 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:15:38 2016 done: Wed Nov  2 20:15:38 2016
 Total Scan time:  4.490 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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