(Linear) (Six-base) MAPSORT of: KIAA1002.seq Check: 3238 from: 1 to: 2520 KIAA1002.orf With 182 enzymes: SgfI * November 13, 2006 11:20 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 1566 2520 Size: 1566 954 Acc65I G'GTAC_C Cuts at: 0 1530 2520 Size: 1530 990 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 624 971 2131 2520 Size: 624 347 1160 389 Fragments arranged by size: 1160 624 389 347 AhdI GACnn_n'nnGTC Cuts at: 0 619 2520 Size: 619 1901 AleI CACnn'nnGTG Cuts at: 0 2386 2520 Size: 2386 134 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 851 2520 Size: 851 1669 AlwNI CAG_nnn'CTG Cuts at: 0 589 1239 1344 1934 2307 2520 Size: 589 650 105 590 373 213 Fragments arranged by size: 650 590 589 373 213 105 ApaLI G'TGCA_C Cuts at: 0 2089 2520 Size: 2089 431 ApoI r'AATT_y Cuts at: 0 58 133 340 2520 Size: 58 75 207 2180 Fragments arranged by size: 2180 207 75 58 AseI AT'TA_AT Cuts at: 0 140 2520 Size: 140 2380 AvaI C'yCGr_G Cuts at: 0 662 2520 Size: 662 1858 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 0 1522 1555 2520 Size: 1522 33 965 Fragments arranged by size: 1522 965 33 BamHI G'GATC_C Cuts at: 0 2495 2520 Size: 2495 25 BanI G'GyrC_C Cuts at: 0 733 1530 2272 2520 Size: 733 797 742 248 Fragments arranged by size: 797 742 733 248 BanII G_rGCy'C Cuts at: 0 1582 2520 Size: 1582 938 BbeI G_GCGC'C Cuts at: 0 2276 2520 Size: 2276 244 BbvCI CC'TCA_GC Cuts at: 0 854 904 1007 1244 1924 2520 Size: 854 50 103 237 680 596 Fragments arranged by size: 854 680 596 237 103 50 BclI T'GATC_A Cuts at: 0 243 2520 Size: 243 2277 BglII A'GATC_T Cuts at: 0 2208 2520 Size: 2208 312 BlpI GC'TnA_GC Cuts at: 0 1348 1562 2520 Size: 1348 214 958 Fragments arranged by size: 1348 958 214 Bme1580I G_kGCm'C Cuts at: 0 738 2093 2520 Size: 738 1355 427 Fragments arranged by size: 1355 738 427 BmrI ACTGGGnnnn_n' Cuts at: 0 260 762 1887 2520 Size: 260 502 1125 633 Fragments arranged by size: 1125 633 502 260 BmtI G_CTAG'C Cuts at: 0 635 2520 Size: 635 1885 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 580 696 1838 1883 2218 2333 2520 Size: 580 116 1142 45 335 115 187 Fragments arranged by size: 1142 580 335 187 116 115 45 Bpu10I CC'TnA_GC Cuts at: 0 854 904 1007 1244 1924 2300 2520 Size: 854 50 103 237 680 376 220 Fragments arranged by size: 854 680 376 237 220 103 50 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 346 501 2275 2520 Size: 346 155 1774 245 Fragments arranged by size: 1774 346 245 155 BsaI GGTCTCn'nnnn_ Cuts at: 0 1814 2520 Size: 1814 706 BsaHI Gr'CG_yC Cuts at: 0 2273 2520 Size: 2273 247 BsaWI w'CCGG_w Cuts at: 0 191 602 2520 Size: 191 411 1918 Fragments arranged by size: 1918 411 191 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 1764 1794 1881 1911 2520 Size: 1764 30 87 30 609 Fragments arranged by size: 1764 609 87 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 1374 2520 Size: 1374 1146 BseYI C'CCAG_C Cuts at: 0 800 998 1253 1518 1739 2401 2520 Size: 800 198 255 265 221 662 119 Fragments arranged by size: 800 662 265 255 221 198 119 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1920 2520 Size: 1920 600 BsiHKAI G_wGCw'C Cuts at: 0 2093 2520 Size: 2093 427 BsmBI CGTCTCn'nnnn_ Cuts at: 0 2440 2520 Size: 2440 80 Bsp1286I G_dGCh'C Cuts at: 0 738 1582 2093 2520 Size: 738 844 511 427 Fragments arranged by size: 844 738 511 427 BspEI T'CCGG_A Cuts at: 0 602 2520 Size: 602 1918 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 1566 2520 Size: 1566 954 BsrGI T'GTAC_A Cuts at: 0 1826 2378 2520 Size: 1826 552 142 Fragments arranged by size: 1826 552 142 BstAPI GCAn_nnn'nTGC Cuts at: 0 733 1101 1479 1934 2520 Size: 733 368 378 455 586 Fragments arranged by size: 733 586 455 378 368 BstBI TT'CG_AA Cuts at: 0 2466 2520 Size: 2466 54 BstEII G'GTnAC_C Cuts at: 0 756 2520 Size: 756 1764 BstXI CCAn_nnnn'nTGG Cuts at: 0 572 1261 2163 2409 2520 Size: 572 689 902 246 111 Fragments arranged by size: 902 689 572 246 111 BstYI r'GATC_y Cuts at: 0 707 1136 2208 2279 2495 2520 Size: 707 429 1072 71 216 25 Fragments arranged by size: 1072 707 429 216 71 25 Bsu36I CC'TnA_GG Cuts at: 0 2216 2491 2520 Size: 2216 275 29 Fragments arranged by size: 2216 275 29 BtgI C'CryG_G Cuts at: 0 1034 1760 2067 2520 Size: 1034 726 307 453 Fragments arranged by size: 1034 726 453 307 BtsI GCAGTG_nn' Cuts at: 0 702 1408 1935 2520 Size: 702 706 527 585 Fragments arranged by size: 706 702 585 527 DraIII CAC_nnn'GTG Cuts at: 0 733 1209 1999 2520 Size: 733 476 790 521 Fragments arranged by size: 790 733 521 476 EaeI y'GGCC_r Cuts at: 0 405 2070 2352 2471 2520 Size: 405 1665 282 119 49 Fragments arranged by size: 1665 405 282 119 49 EarI CTCTTCn'nnn_ Cuts at: 0 2254 2520 Size: 2254 266 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 2254 2520 Size: 2254 266 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 580 624 696 971 1838 1883 2131 2218 Size: 580 44 72 275 867 45 248 87 Cuts at: 2218 2333 2520 Size: 115 187 Fragments arranged by size: 867 580 275 248 187 115 87 72 45 44 EcoNI CCTnn'n_nnAGG Cuts at: 0 1586 2520 Size: 1586 934 EcoO109I rG'GnC_Cy Cuts at: 0 1341 2520 Size: 1341 1179 EcoRV GAT'ATC Cuts at: 0 418 2520 Size: 418 2102 HaeII r_GCGC'y Cuts at: 0 2010 2276 2520 Size: 2010 266 244 Fragments arranged by size: 2010 266 244 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 171 203 605 637 918 950 2126 2158 Size: 171 32 402 32 281 32 1176 32 Cuts at: 2158 2520 Size: 362 Fragments arranged by size: 1176 402 362 281 171 32 32 32 32 HincII GTy'rAC Cuts at: 0 2078 2520 Size: 2078 442 KasI G'GCGC_C Cuts at: 0 2272 2520 Size: 2272 248 KpnI G_GTAC'C Cuts at: 0 1534 2520 Size: 1534 986 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 1082 1202 2520 Size: 1082 120 1318 Fragments arranged by size: 1318 1082 120 MscI TGG'CCA Cuts at: 0 407 2072 2473 2520 Size: 407 1665 401 47 Fragments arranged by size: 1665 407 401 47 MslI CAynn'nnrTG Cuts at: 0 1861 2386 2520 Size: 1861 525 134 Fragments arranged by size: 1861 525 134 MspA1I CmG'CkG Cuts at: 0 958 1239 1525 1719 1803 2520 Size: 958 281 286 194 84 717 Fragments arranged by size: 958 717 286 281 194 84 NarI GG'CG_CC Cuts at: 0 2273 2520 Size: 2273 247 NcoI C'CATG_G Cuts at: 0 1760 2067 2520 Size: 1760 307 453 Fragments arranged by size: 1760 453 307 NheI G'CTAG_C Cuts at: 0 631 2520 Size: 631 1889 NspI r_CATG'y Cuts at: 0 612 1122 2520 Size: 612 510 1398 Fragments arranged by size: 1398 612 510 PasI CC'CwG_GG Cuts at: 0 1110 2520 Size: 1110 1410 PfoI T'CCnGG_A Cuts at: 0 2498 2520 Size: 2498 22 PstI C_TGCA'G Cuts at: 0 972 1651 2520 Size: 972 679 869 Fragments arranged by size: 972 869 679 PvuII CAG'CTG Cuts at: 0 958 1239 1719 2520 Size: 958 281 480 801 Fragments arranged by size: 958 801 480 281 ScaI AGT'ACT Cuts at: 0 1675 2520 Size: 1675 845 SexAI A'CCwGG_T Cuts at: 0 752 1698 2520 Size: 752 946 822 Fragments arranged by size: 946 822 752 SfcI C'TryA_G Cuts at: 0 968 1215 1542 1586 1647 1788 2520 Size: 968 247 327 44 61 141 732 Fragments arranged by size: 968 732 327 247 141 61 44 SfoI GGC'GCC Cuts at: 0 2274 2520 Size: 2274 246 SmlI C'TyrA_G Cuts at: 0 361 516 2290 2520 Size: 361 155 1774 230 Fragments arranged by size: 1774 361 230 155 SpeI A'CTAG_T Cuts at: 0 277 2520 Size: 277 2243 SphI G_CATG'C Cuts at: 0 612 2520 Size: 612 1908 StuI AGG'CCT Cuts at: 0 1388 1514 2520 Size: 1388 126 1006 Fragments arranged by size: 1388 1006 126 StyI C'CwwG_G Cuts at: 0 88 571 939 1305 1760 2067 2520 Size: 88 483 368 366 455 307 453 Fragments arranged by size: 483 455 453 368 366 307 88 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 401 861 2520 Size: 401 460 1659 Fragments arranged by size: 1659 460 401 TatI w'GTAC_w Cuts at: 0 793 1400 1538 1673 1826 2036 2378 2520 Size: 793 607 138 135 153 210 342 142 Fragments arranged by size: 793 607 342 210 153 142 138 135 Tth111I GACn'n_nGTC Cuts at: 0 1946 2520 Size: 1946 574 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 720 1312 2101 2520 Size: 720 592 789 419 Fragments arranged by size: 789 720 592 419 Enzymes that do cut: AarI Acc65I AcuI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AvaI BaeI BamHI BanI BanII BbeI BbvCI BclI BglII BlpI Bme1580I BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiHKAI BsmBI Bsp1286I BspEI BspMI BsrGI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtsI DraIII EaeI EarI EciI Eco57MI EcoNI EcoO109I EcoRV HaeII Hin4I HincII KasI KpnI MmeI MscI MslI MspA1I NarI NcoI NheI NspI PasI PfoI PstI PvuII ScaI SexAI SfcI SfoI SmlI SpeI SphI StuI StyI TaqII TatI Tth111I XcmI Enzymes that do not cut: AatII AccI AclI AfeI AflII AflIII AgeI AloI ApaI AscI AsiSI AvrII BbsI BcgI BciVI BfrBI BglI BmgBI BplI BsaAI BsaBI BsiEI BsiWI BsmI BspHI BsrBI BsrDI BsrFI BssHII BssSI BstZ17I BtgZI ClaI CspCI DraI DrdI EagI EcoICRI EcoRI FalI FseI FspI FspAI HindIII HpaI MfeI MluI NaeI NdeI NgoMIV NotI NruI NsiI PacI PciI PflMI PmeI PmlI PpiI PpuMI PshAI PsiI PspOMI PspXI PsrI PvuI RsrII SacI SacII SalI SanDI SapI SbfI SfiI SgfI SgrAI SmaI SnaBI SrfI SspI SwaI TstI XbaI XhoI XmaI XmnI ZraI