Result of FASTA (ccds) for pF1KA0985
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0985, 694 aa
  1>>>pF1KA0985 694 - 694 aa - 694 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.6768+/-0.00119; mu= -15.9591+/- 0.071
 mean_var=538.7992+/-108.171, 0's: 0 Z-trim(116.8): 56  B-trim: 0 in 0/53
 Lambda= 0.055254
 statistics sampled from 17403 (17456) to 17403 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.536), width:  16
 Scan time:  4.570

The best scores are:                                      opt bits E(32554)
CCDS44979.1 RPH3A gene_id:22895|Hs108|chr12        ( 694) 4813 398.4 1.8e-110
CCDS31904.1 RPH3A gene_id:22895|Hs108|chr12        ( 690) 4763 394.4 2.9e-109
CCDS10666.1 DOC2A gene_id:8448|Hs108|chr16         ( 400) 1402 126.3 8.5e-29
CCDS73934.1 DOC2B gene_id:8447|Hs108|chr17         ( 412)  890 85.5 1.7e-16
CCDS10994.1 RPH3AL gene_id:9501|Hs108|chr17        ( 315)  746 73.9 3.9e-13


>>CCDS44979.1 RPH3A gene_id:22895|Hs108|chr12             (694 aa)
 initn: 4813 init1: 4813 opt: 4813  Z-score: 2096.7  bits: 398.4 E(32554): 1.8e-110
Smith-Waterman score: 4813; 100.0% identity (100.0% similar) in 694 aa overlap (1-694:1-694)

               10        20        30        40        50        60
pF1KA0 MTDTVFSNSSNRWMYPSDRPLQSNDKEQLQAGWSVHPGGQPDRQRKQEELTDEEKEIINR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MTDTVFSNSSNRWMYPSDRPLQSNDKEQLQAGWSVHPGGQPDRQRKQEELTDEEKEIINR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 VIARAEKMEEMEQERIGRLVDRLENMRKNVAGDGVNRCILCGEQLGMLGSACVVCEDCKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VIARAEKMEEMEQERIGRLVDRLENMRKNVAGDGVNRCILCGEQLGMLGSACVVCEDCKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 NVCTKCGVETNNRLHSVWLCKICIEQREVWKRSGAWFFKGFPKQVLPQPMPIKKTKPQQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NVCTKCGVETNNRLHSVWLCKICIEQREVWKRSGAWFFKGFPKQVLPQPMPIKKTKPQQP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VSEPAAPEQPAPEPKHPARAPARGDSEDRRGPGQKTGPDPASAPGRGNYGPPVRRASEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VSEPAAPEQPAPEPKHPARAPARGDSEDRRGPGQKTGPDPASAPGRGNYGPPVRRASEAR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 MSSSSRDSESWDHSGGAGDSSRSPAGLRRANSVQASRPAPGSVQSPAPPQPGQPGTPGGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSSSSRDSESWDHSGGAGDSSRSPAGLRRANSVQASRPAPGSVQSPAPPQPGQPGTPGGS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 RPGPGPAGRFPDQKPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RPGPGPAGRFPDQKPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQAS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 AAAPQPAAARQPPPPEEEEEEANSYDSDEATTLGALEFSLLYDQDNSSLQCTIIKAKGLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AAAPQPAAARQPPPPEEEEEEANSYDSDEATTLGALEFSLLYDQDNSSLQCTIIKAKGLK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 PMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPIWNETLVYHGITDEDMQRKTLRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPIWNETLVYHGITDEDMQRKTLRI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 SVCDEDKFGHNEFIGETRFSLKKLKPNQRKNFNICLERVIPMKRAGTTGSARGMALYEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SVCDEDKFGHNEFIGETRFSLKKLKPNQRKNFNICLERVIPMKRAGTTGSARGMALYEEE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 QVERVGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QVERVGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA
              610       620       630       640       650       660

              670       680       690    
pF1KA0 KGERLKHWYECLKNKDKKIERWHQLQNENHVSSD
       ::::::::::::::::::::::::::::::::::
CCDS44 KGERLKHWYECLKNKDKKIERWHQLQNENHVSSD
              670       680       690    

>>CCDS31904.1 RPH3A gene_id:22895|Hs108|chr12             (690 aa)
 initn: 4621 init1: 4621 opt: 4763  Z-score: 2075.2  bits: 394.4 E(32554): 2.9e-109
Smith-Waterman score: 4763; 99.3% identity (99.4% similar) in 694 aa overlap (1-694:1-690)

               10        20        30        40        50        60
pF1KA0 MTDTVFSNSSNRWMYPSDRPLQSNDKEQLQAGWSVHPGGQPDRQRKQEELTDEEKEIINR
       :::::::::::::::::::::::    .::::::::::::::::::::::::::::::::
CCDS31 MTDTVFSNSSNRWMYPSDRPLQS----KLQAGWSVHPGGQPDRQRKQEELTDEEKEIINR
               10        20            30        40        50      

               70        80        90       100       110       120
pF1KA0 VIARAEKMEEMEQERIGRLVDRLENMRKNVAGDGVNRCILCGEQLGMLGSACVVCEDCKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VIARAEKMEEMEQERIGRLVDRLENMRKNVAGDGVNRCILCGEQLGMLGSACVVCEDCKK
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KA0 NVCTKCGVETNNRLHSVWLCKICIEQREVWKRSGAWFFKGFPKQVLPQPMPIKKTKPQQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NVCTKCGVETNNRLHSVWLCKICIEQREVWKRSGAWFFKGFPKQVLPQPMPIKKTKPQQP
        120       130       140       150       160       170      

              190       200       210       220       230       240
pF1KA0 VSEPAAPEQPAPEPKHPARAPARGDSEDRRGPGQKTGPDPASAPGRGNYGPPVRRASEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VSEPAAPEQPAPEPKHPARAPARGDSEDRRGPGQKTGPDPASAPGRGNYGPPVRRASEAR
        180       190       200       210       220       230      

              250       260       270       280       290       300
pF1KA0 MSSSSRDSESWDHSGGAGDSSRSPAGLRRANSVQASRPAPGSVQSPAPPQPGQPGTPGGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSSSSRDSESWDHSGGAGDSSRSPAGLRRANSVQASRPAPGSVQSPAPPQPGQPGTPGGS
        240       250       260       270       280       290      

              310       320       330       340       350       360
pF1KA0 RPGPGPAGRFPDQKPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RPGPGPAGRFPDQKPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQAS
        300       310       320       330       340       350      

              370       380       390       400       410       420
pF1KA0 AAAPQPAAARQPPPPEEEEEEANSYDSDEATTLGALEFSLLYDQDNSSLQCTIIKAKGLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AAAPQPAAARQPPPPEEEEEEANSYDSDEATTLGALEFSLLYDQDNSSLQCTIIKAKGLK
        360       370       380       390       400       410      

              430       440       450       460       470       480
pF1KA0 PMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPIWNETLVYHGITDEDMQRKTLRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPIWNETLVYHGITDEDMQRKTLRI
        420       430       440       450       460       470      

              490       500       510       520       530       540
pF1KA0 SVCDEDKFGHNEFIGETRFSLKKLKPNQRKNFNICLERVIPMKRAGTTGSARGMALYEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SVCDEDKFGHNEFIGETRFSLKKLKPNQRKNFNICLERVIPMKRAGTTGSARGMALYEEE
        480       490       500       510       520       530      

              550       560       570       580       590       600
pF1KA0 QVERVGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QVERVGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGK
        540       550       560       570       580       590      

              610       620       630       640       650       660
pF1KA0 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA
        600       610       620       630       640       650      

              670       680       690    
pF1KA0 KGERLKHWYECLKNKDKKIERWHQLQNENHVSSD
       ::::::::::::::::::::::::::::::::::
CCDS31 KGERLKHWYECLKNKDKKIERWHQLQNENHVSSD
        660       670       680       690

>>CCDS10666.1 DOC2A gene_id:8448|Hs108|chr16              (400 aa)
 initn: 1398 init1: 708 opt: 1402  Z-score: 630.4  bits: 126.3 E(32554): 8.5e-29
Smith-Waterman score: 1407; 56.6% identity (75.6% similar) in 389 aa overlap (304-688:23-389)

           280       290       300       310       320       330   
pF1KA0 QASRPAPGSVQSPAPPQPGQPGTPGGSRPGPGPAGRFPDQKPEVAPSDPGTTAPPREERT
                                     :::  :   :  .  :  ::   :   :  
CCDS10         MRGRRGDRMTINIQEHMAINVCPGPI-RPIRQISDYFPRGPG---P---EGG
                       10        20         30        40           

           340       350       360       370       380       390   
pF1KA0 GGVGGYPAVGAREDRMSHPSGPYSQASAAAPQPAAARQPPPPEEEEEEANSYDSDEATTL
       :: ::               .:   .  :   :::      ::.  : ..:::::.::.:
CCDS10 GGGGG--------------EAPAHLVPLALAPPAALLGATTPEDGAE-VDSYDSDDATAL
          50                      60        70         80        90

           400       410       420       430       440       450   
pF1KA0 GALEFSLLYDQDNSSLQCTIIKAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN
       :.:::.::::. . .:.:.:..:::::::: :::::::::::::::: :.:::.::: ::
CCDS10 GTLEFDLLYDRASCTLHCSILRAKGLKPMDFNGLADPYVKLHLLPGACKANKLKTKTQRN
              100       110       120       130       140       150

           460       470       480       490       500       510   
pF1KA0 TRNPIWNETLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKPNQRKNFN
       : ::.::: :.: ::::.:. .:.:::.::::::..::::::: :  :..:::.:.:.::
CCDS10 TLNPVWNEDLTYSGITDDDITHKVLRIAVCDEDKLSHNEFIGEIRVPLRRLKPSQKKHFN
              160       170       180       190       200       210

           520       530          540        550       560         
pF1KA0 ICLERVIPMKRAGTTGSA-RGMALY--EEEQVER-VGDIEERGKILVSLMYSTQQGGLIV
       ::::: .:.   .. ..: ::.. :  : ::.:.  : .::::.::.:: ::... ::.:
CCDS10 ICLERQVPLASPSSMSAALRGISCYLKELEQAEQGQGLLEERGRILLSLSYSSRRRGLLV
              220       230       240       250       260       270

     570       580       590       600       610       620         
pF1KA0 GIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD
       ::.::.::::::.::::::.:: .:.::. ::.:::: .:::::::::::::::.:. : 
CCDS10 GILRCAHLAAMDVNGYSDPYVKTYLRPDVDKKSKHKTCVKKKTLNPEFNEEFFYEIELST
              280       290       300       310       320       330

     630       640       650       660       670       680         
pF1KA0 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNEN
       :: :.:...:::::::::::.::: .:: .:.::  ::: .::.. :  .:::: : .: 
CCDS10 LATKTLEVTVWDYDIGKSNDFIGGVSLGPGARGEARKHWSDCLQQPDAALERWHTLTSEL
              340       350       360       370       380       390

     690         
pF1KA0 HVSSD     
                 
CCDS10 PPAAGALSSA
              400

>>CCDS73934.1 DOC2B gene_id:8447|Hs108|chr17              (412 aa)
 initn: 1582 init1: 824 opt: 890  Z-score: 409.7  bits: 85.5 E(32554): 1.7e-16
Smith-Waterman score: 1617; 62.0% identity (79.0% similar) in 400 aa overlap (297-688:24-404)

        270       280       290       300       310       320      
pF1KA0 LRRANSVQASRPAPGSVQSPAPPQPGQPGTPGGSRPGPGPAGRFPDQKPEVAPSDPG--T
                                     ::  ::    .  :: . :.  : : :  .
CCDS73        MTLRRRGEKATISIQEHMAIDVCPGPIRPIKQISDYFP-RFPRGLPPDAGPRA
                      10        20        30         40        50  

          330           340         350       360       370        
pF1KA0 TAPPREERTGGVGGY----PAVGAREDR--MSHPSGPYSQASAAAPQPAAARQPPPPEEE
       .:::      .:.:     :. :::::   ...  : :... . .: :. :: :  : :.
CCDS73 AAPPDAPARPAVAGAGRRSPSDGAREDDEDVDQLFGAYGSSPGPSPGPSPARPPAKPPED
             60        70        80        90       100       110  

      380       390       400       410       420       430        
pF1KA0 EEEANSYDSDEATTLGALEFSLLYDQDNSSLQCTIIKAKGLKPMDSNGLADPYVKLHLLP
       : .:..:.::. :.::.:.:::::::.:..:.::: ::::::::: ::::::::::::::
CCDS73 EPDADGYESDDCTALGTLDFSLLYDQENNALHCTITKAKGLKPMDHNGLADPYVKLHLLP
            120       130       140       150       160       170  

      440       450       460       470       480       490        
pF1KA0 GASKSNKLRTKTLRNTRNPIWNETLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETR
       ::::.::::::::::: :: :::::.:.::::::: :::::::::::::: :::::::::
CCDS73 GASKANKLRTKTLRNTLNPTWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETR
            180       190       200       210       220       230  

      500       510       520       530       540       550        
pF1KA0 FSLKKLKPNQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERVGDIEERGKILVSL
         :::::::. :.:.::::. .:. ..             :..     ..::::.::.::
CCDS73 VPLKKLKPNHTKTFSICLEKQLPVDKT-------------EDK-----SLEERGRILISL
            240       250                    260            270    

      560       570       580       590       600       610        
pF1KA0 MYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN
        ::.:. ::.:::.::.:::::::::::::.:: .:.::. ::.:::: .::::::::::
CCDS73 KYSSQKQGLLVGIVRCAHLAAMDANGYSDPYVKTYLRPDVDKKSKHKTAVKKKTLNPEFN
          280       290       300       310       320       330    

      620       630       640       650       660       670        
pF1KA0 EEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKK
       ::: :.:::.:::::::...:::::::::::.:::  ::: :::::::::..:::::::.
CCDS73 EEFCYEIKHGDLAKKSLEVTVWDYDIGKSNDFIGGVVLGIHAKGERLKHWFDCLKNKDKR
          340       350       360       370       380       390    

      680       690      
pF1KA0 IERWHQLQNENHVSSD  
       ::::: : .:        
CCDS73 IERWHTLTSELPGAVLSD
          400       410  

>>CCDS10994.1 RPH3AL gene_id:9501|Hs108|chr17             (315 aa)
 initn: 651 init1: 387 opt: 746  Z-score: 349.2  bits: 73.9 E(32554): 3.9e-13
Smith-Waterman score: 772; 39.2% identity (66.5% similar) in 337 aa overlap (1-324:1-312)

               10        20        30        40        50        60
pF1KA0 MTDTVFSNSSNRWMYPSDRPLQSNDKEQLQAGWSVHPGGQPDRQRKQEELTDEEKEIINR
       :.::.:......:. :.:: :    . .::.:::::   : ..::....:.  : : : .
CCDS10 MADTIFGSGNDQWVCPNDRQLAL--RAKLQTGWSVHTY-QTEKQRRKQHLSPAEVEAILQ
               10        20          30         40        50       

               70        80        90       100       110       120
pF1KA0 VIARAEKMEEMEQERIGRLVDRLENMRKNVAGDGVNRCILCGEQLGMLGSACVVCEDCKK
       :: :::... .::.::::::.:::.::.:: :.:...:.:::: ::.:::. : :.::.:
CCDS10 VIQRAERLDVLEQQRIGRLVERLETMRRNVMGNGLSQCLLCGEVLGFLGSSSVFCKDCRK
        60        70        80        90       100       110       

              130        140       150       160       170         
pF1KA0 NVCTKCGVETN-NRLHSVWLCKICIEQREVWKRSGAWFFKGFPKQVLPQPMPIKKTKPQ-
       .::::::.:.. .. . .:::::: :::::::::::::.::.:: .::   : .   :. 
CCDS10 KVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYKGLPKYILPLKTPGRADDPHF
       120       130       140       150       160       170       

      180       190       200       210       220       230        
pF1KA0 QPVSEPAAPEQPAPEPKHPARAPARGDSEDRRGPGQKTGPDPASAPGRGNYGPPVRRASE
       .:.  :. : .  :. .. .:  . .     ::   ..  :  :  . ..         :
CCDS10 RPL--PTEPAEREPRSSETSRIYTWA-----RGRVVSSDSDSDSDLSSSSL--------E
       180         190       200            210       220          

      240        250          260            270        280        
pF1KA0 ARMSSSS-RDSES---WDHSGGAGDSSR-----SPAGLRRANSVQAS-RPAPGSVQSPAP
        :. :.. :: ..   : .:::. .. :      :. :   .:  :: . . ::.. :. 
CCDS10 DRLPSTGVRDRKGDKPWKESGGSVEAPRMGFTHPPGHLSGCQSSLASGETGTGSADPPGG
            230       240       250       260       270       280  

      290        300       310       320       330       340       
pF1KA0 PQPGQPG-TPGGSRPGPGPAGRFPDQKPEVAPSDPGTTAPPREERTGGVGGYPAVGARED
       :.::    .:  . :: .::.       ..::. :..                       
CCDS10 PRPGLTRRAPVKDTPGRAPAA-------DAAPAGPSSCLG                    
            290       300              310                         

       350       360       370       380       390       400       
pF1KA0 RMSHPSGPYSQASAAAPQPAAARQPPPPEEEEEEANSYDSDEATTLGALEFSLLYDQDNS




694 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:11:58 2016 done: Wed Nov  2 20:11:58 2016
 Total Scan time:  4.570 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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