GENSCAN 1.0	Date run:  2-Nov-116	Time: 20:08:55

Sequence gi568815596f:24991324_25245093 : 253770 bp : 48.10% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  27023  27085   63  1  0   53   72    66 0.018   2.65
 1.02 Intr +  36101  36194   94  1  1   35   80    87 0.013   2.14
 1.03 Intr +  40823  41068  246  0  0   75   85    92 0.036   5.03
 1.04 Intr +  43950  44061  112  1  1   88   80    65 0.072   5.14
 1.05 Term +  52478  52508   31  2  1  125   48    56 0.181   2.63
 1.06 PlyA +  55783  55788    6                               1.05

 2.02 PlyA -  56174  56169    6                               1.05
 2.01 Sngl -  89987  89475  513  2  0   66   45   353 0.993  24.84
 2.00 Prom -  93336  93297   40                              -3.46

 3.00 Prom +  95664  95703   40                              -5.36
 3.01 Init +  97663  97710   48  0  0  107   46    70 0.591   3.73
 3.02 Intr +  99923 100078  156  1  0   98   90    19 0.327   3.31
 3.03 Intr + 101680 101807  128  0  2   91  106   204 0.157  21.98
 3.04 Intr + 112314 112464  151  0  1  102   99   301 0.250  32.76
 3.05 Intr + 130350 130471  122  2  2   86   89   194 0.993  18.59
 3.06 Intr + 134961 135008   48  0  0   99   85    29 0.703   1.50
 3.07 Intr + 136860 137009  150  0  0  100   99   119 0.955  13.48
 3.08 Intr + 138652 138786  135  1  0   97   84   140 0.999  14.18
 3.09 Intr + 139229 139307   79  2  1   86   80    58 0.999   4.35
 3.10 Intr + 140045 140180  136  1  1   96   82   261 0.806  26.44
 3.11 Intr + 140427 140588  162  1  0   73   41   425 0.997  36.25
 3.12 Intr + 141580 141691  112  2  1  109   72   145 0.985  14.44
 3.13 Intr + 142060 142111   52  1  1   76   99     8 0.969  -0.39
 3.14 Intr + 144144 144316  173  2  2   89   66   224 0.997  19.04
 3.15 Intr + 145200 145275   76  0  1   26   92   137 0.729   7.42
 3.16 Intr + 146018 146179  162  1  0   97   75   394 0.989  39.17
 3.17 Intr + 147736 147867  132  0  0   64   73   181 0.991  15.04
 3.18 Intr + 150043 150110   68  0  2   68   94    62 0.994   2.50
 3.19 Intr + 152412 152539  128  0  2  114   80   152 0.999  17.32
 3.20 Intr + 153637 153728   92  2  2   94  105    91 0.983  11.11
 3.21 Intr + 158371 158419   49  0  1  121  111    80 0.998  11.85
 3.22 Intr + 160576 160697  122  2  2   18  114   227 0.921  18.51
 3.23 Intr + 162389 162438   50  1  2  103  131    48 0.977   8.08
 3.24 Term + 162912 163017  106  0  1  120   38    47 0.905   0.78
 3.25 PlyA + 164851 164856    6                               1.05

 4.05 PlyA - 164973 164968    6                              -0.45
 4.04 Term - 165746 165594  153  2  0  109   48   114 0.966   7.42
 4.03 Intr - 166049 165926  124  1  1   99   84    21 0.628   3.39
 4.02 Intr - 170429 169762  668  2  2  107   44  1411 0.102 129.13
 4.01 Init - 173449 173318  132  1  0   74   92   210 0.990  18.14
 4.00 Prom - 175589 175550   40                              -5.76

 5.04 PlyA - 175985 175980    6                               1.05
 5.03 Term - 177106 176999  108  1  0   52   37    94 0.099  -0.79
 5.02 Intr - 177746 177604  143  0  2   98   93    44 0.033   5.97
 5.01 Init - 213271 213082  190  1  1   95   58   144 0.382   9.31
 5.00 Prom - 232550 232511   40                              -4.56

 6.12 PlyA - 232860 232855    6                               1.05
 6.11 Term - 238844 238736  109  1  1  115   44    81 0.732   4.38
 6.10 Intr - 243097 242960  138  0  0  146   47    94 0.810  10.68
 6.09 Intr - 244502 244384  119  2  2   73   75    67 0.900   3.16
 6.08 Intr - 245682 245613   70  2  1   96   82    48 0.791   4.18
 6.07 Intr - 247892 247807   86  2  2   91   77    72 0.821   5.02
 6.06 Intr - 249165 248979  187  2  1   68   65   213 0.600  16.69
 6.05 Intr - 249407 249313   95  2  2   94   49   139 0.582   9.36
 6.04 Intr - 250384 250239  146  2  2   52   50   273 0.960  19.90
 6.03 Intr - 252659 252575   85  2  1   63   94    60 0.960   3.49
 6.02 Intr - 253015 252832  184  0  1  104   59   202 0.996  18.69
 6.01 Intr - 253329 253217  113  0  2   83   94   254 0.999  24.68

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 170429 169758  672  2  0  107   55  1437 0.898 136.06
S.002 Init + 174255 174399  145  2  1   54   70   114 0.867   6.48
S.003 Term + 174456 174586  131  1  2   92   43   107 0.917   4.94


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:24991324_25245093|GENSCAN_predicted_peptide_1|181_aa
MFEIPETEKLKYLKVAGCGEEDTDCLFIPLDIVIVYNTDNTMMIGSEDLEVPAMSTSSLY
LWNPGFFHGSGVELKNLPCSKLPRGCLVQAEGKPSVNHLLQFPSELPRRVTLARLICYFI
CCHITNLQLSYLQSDQQEEEMEATPWTFTSFRVWVGLGFAVRASITQDGDGRGSSLKLQI
I

>gi568815596f:24991324_25245093|GENSCAN_predicted_CDS_1|546_bp
atgtttgagatacctgaaactgaaaagctgaagtatttgaaagtggctggctgtggggag
gaagacactgattgtctttttatcccattggacatcgtgatagtctacaatactgataac
accatgatgataggatctgaagacctggaagtaccagccatgtccaccagttccctctac
ctgtggaacccaggcttcttccatgggtctggagtggagctcaagaatctgccttgcagc
aagctccccaggggctgcttggtgcaagctgaagggaagccctctgtgaatcacctcctt
cagttccccagcgagcttcctagaagagtgacattggccagactcatctgctacttcatc
tgttgccacatcacaaacctgcagcttagctacttgcaatctgatcagcaggaagaagag
atggaagcaacgccatggaccttcacgtccttcagagtgtgggtgggcttgggctttgca
gtgagagcaagtatcacccaggatggagatgggagaggtagcagcctgaagctgcagatc
atttga

>gi568815596f:24991324_25245093|GENSCAN_predicted_peptide_2|170_aa
MKAQVSADGRGKGTFESGLKGGVKIVFSPEEAKAVSSEMIGKKLFTKQMGEKGGICNQAL
KRKYPRGEDYFAIGMERSFQGPILIGSSHGGVNIADVAAETPDAIKEPVDIVEGIKKEQA
LRLEQKMGFPPNIVDSAAENMVKLYSLFLKYDATMIRNKSNGEDSDGAVL

>gi568815596f:24991324_25245093|GENSCAN_predicted_CDS_2|513_bp
atgaaggcgcaggtttcagctgatggtcgaggaaaaggaacatttgaaagtggcctcaaa
ggaggagtgaagatagttttctctccagaagaagcaaaagctgtttcctcagaaatgatt
gggaaaaagttgtttaccaagcaaatgggagaaaagggtggaatatgcaatcaagcactg
aagcgaaaataccctaggggagaagactactttgcaatagggatggagaggtcatttcaa
ggtcctatattaataggaagttcacatggtggtgtcaacattgcagatgttgctgctgag
actcctgatgcaattaaagaacctgttgatattgtagaaggcatcaaaaaggaacaagct
ctccggcttgaacagaagatgggatttccacctaatattgtggattccgcagcagaaaac
atggtcaagctttacagcctttttctgaaatatgatgcaaccatgataagaaataaatcc
aatggtgaagattcagatggagctgtgctgtga

>gi568815596f:24991324_25245093|GENSCAN_predicted_peptide_3|878_aa
MGPVWWRLLEASVLGKAALALAPTFPGPDQEALLTVFPILIPGVCGCCGALRPRYKRLVD
NIFPEDPEDGLVKTNMEKLTFYALSAPEKLDRIGAYLSERLIRDVGRHRYGYVCIAMEAL
DQLLMACHCQSINLFVESFLKMVAKLLESEKPNLQILGTNSFVKFANIEEDTPSYHRSYD
FFVSRFSEMCHSSHDDLEIKTKLNQYFHPSLLSICDYRIRMSGIKGLQGVVRKTVNDELQ
ANIWDPQHMDKIVPSLLFNLQHVEEAESRSPSPLQAPEKEKESPAELAERCLRELLGRAA
FGNIKNAIKPVLIHLDNHSLWEPKVFAIRCFKIIMYSIQPQHSHLVIQQLLGHLDANSRS
AATVRAGIVEVLSEAAVIAATGSVGPTVLEMFNTLLRQLRLSIDYALTGSYDGAVSLGTK
IIKEHEERMFQEAVIKTVGSFASTLPTYQRSEVILFIMSKVPRPSLHQAVDTGRTGENRN
RLTQIMLLKSLLQVSTGFQCNNMMSALPSNFLDRLLSTALMEDAEIRLFVLEILISFIDR
HGNRHKFSTISTLSDISVLKLKVDKCSRQDTVFMKKHSQQLYRHIYLSCKEETNVQKHYE
ALYGLLALISIELANEEVVVDLIRLVLAVQDVAQVNEENLPVYNRCALYALGAAYLNLIS
QLTTVPAFCQHIHEVIETRKKEAPYMLPEDVFVERPRLSQNLDGVVIELLFRQSKISEVL
GGSGYNSDRLCLPYIPQLTDEDRLSKRRSIGETISLQVEVESRNSPEKEERVPAEEITYE
TLKKAIALCVEVDSVAVEEQERERRRQVVEKFQKAPFEEIAAHCGARASLLQSKLNQIFE
ITIRPPPSPSGTITAAYGQPQNHSIPVYEMKFPDLCVY

>gi568815596f:24991324_25245093|GENSCAN_predicted_CDS_3|2637_bp
atgggccctgtgtggtggcggctcctggaggcctctgtgctggggaaggctgccctggcc
ctggctccaacctttcctgggcccgaccaggaggctttgctcacagtttttcccattctt
attccaggtgtgtgtggctgctgtggtgccctacgccccaggtacaaaaggctggttgac
aacatcttccctgaggatcccgaggatggtctggtgaagaccaacatggagaagctgacc
ttctatgccctctcagctccagaaaaacttgatcgtattggcgcctacctctctgagagg
ctcatccgtgacgtgggtcgccatcgatatgggtacgtgtgcattgctatggaggctttg
gaccagctgctcatggcctgccactgccagagcatcaacctcttcgtggagagcttcctc
aagatggtggccaagctgctggagtcagagaaacccaacctgcagatcctcggcaccaac
tcgtttgtgaagtttgccaacatcgaggaggacaccccgtcctatcaccggagctatgac
ttctttgtgtcccgattcagtgaaatgtgccactcgagccatgatgacttagaaatcaag
accaagctcaatcagtacttccaccccagcctcctgagtatctgtgactacagaattcga
atgtcaggcatcaaaggcctgcaaggggtggtgaggaagacggtgaatgatgaactgcag
gccaatatctgggacccacagcacatggataagatcgttccatcactgcttttcaatcta
cagcatgtagaggaggcagagagccggtctccctcacccctccaagcacctgagaaggag
aaagagagccccgcggagctggctgagaggtgtcttcgggagctgctgggccgggctgcc
tttggcaacatcaaaaacgccatcaagcctgttctcatccatctggataaccattctctt
tgggaacccaaggtgtttgccatccgttgctttaaaatcatcatgtactcaattcagccg
cagcactcacacctggtcatccagcagctcctgggccacctggacgccaacagccgcagc
gctgcgacggtgcgcgcgggcatcgtggaagtcttgtcggaagccgcggtcatcgctgcc
accggctctgtggggcccacagtactggagatgttcaacacgctgctgaggcagctgcgg
ctcagcatcgactacgcgctgaccgggagctacgacggggcggtcagcctcggcaccaag
atcatcaaggagcacgaggagcgcatgttccaggaggccgtcatcaagaccgtgggctcc
tttgccagcacgctgcccacctaccagcgctccgaggtgatcctcttcatcatgagcaag
gtcccgcggccatccctgcaccaggcggtggacacaggcaggacgggggagaataggaac
cgtctgacccagattatgctgctaaaatccctcctgcaggtatccacaggtttccagtgc
aacaacatgatgtcagccctgcctagcaacttcctggaccgccttctctccaccgccctc
atggaggatgcagaaattcgactctttgttctagagattctcatcagtttcattgatcgt
catggcaaccgccacaagttctctaccatcagtaccctcagtgacatctctgtcctgaag
ctgaaagtggacaagtgctctcgacaggacaccgtcttcatgaagaagcactcccagcag
ctctacagacacatctacctgagctgcaaggaggaaacaaacgtgcagaaacactacgag
gcgctctatggcttgctggccctcatcagcatcgagctggctaacgaggaggtggtggtg
gacctcatccgtctggtgctggctgttcaggacgtggcccaagtcaatgaggagaacttg
cctgtctacaaccgctgtgccctctatgctctgggcgcagcctacctgaacctcatcagt
cagctcacaacagtgcctgccttctgccagcacatccatgaggtgatagagaccaggaag
aaagaggctccatacatgctccccgaggatgtgtttgtggagaggcccaggctgtctcag
aatcttgatggggtggtcattgagctcctcttccgccagagcaagatcagtgaagtcctg
ggaggcagtggctacaactcggaccggctctgcctgccctacattcctcagctgacagat
gaggatcgtttatccaagaggaggagcattggagagaccatctccctgcaggtggaggta
gaatcgaggaacagtccggagaaggaggagcgagtgcctgccgaggagatcacctatgag
acactgaagaaagccattgctctctgtgtcgaagtggacagcgtagcagtggaggagcag
gagcgtgagcggcggcggcaggtggtggagaagttccagaaggcacccttcgaggagatt
gctgcacactgcggggcccgggcatcgctgctccagagcaaactcaatcagatctttgaa
atcaccatccggcccccaccaagcccatcaggaaccatcactgcagcctacggtcagccg
cagaaccactccatccccgtctatgaaatgaagtttcccgatctgtgtgtatactga

>gi568815596f:24991324_25245093|GENSCAN_predicted_peptide_4|358_aa
MPRSCCSRSGALLLALLLQASMEVRGWCLESSQCQDLTTESNLLECIRACKPDLSAETPM
FPGNGDEQPLTENPRKYVMGHFRWDRFGRRNSSSSGSSGAGQKREDVSAGEDCGPLPEGG
PEPRSDGAKPGPREGKRSYSMEHFRWGKPVGKKRRPVKVYPNGAEDESAEAFPLEFKREL
TGQRLREGDGPDGPADDGAGAQADLEHSLLVAAEKKDEGPYRMEHFRWGSPPKDKRYGGF
MTSEKSQTPLVTLFKNAIIKNAYKKGEACAGVRRLPTITLTFTFPILAYLARIQVLLHVS
RQPNTLLSDGDEGQKHLGISGSNAGSGKMLQGGDCQVPEPGLTGSAQDEAATGNPNVK

>gi568815596f:24991324_25245093|GENSCAN_predicted_CDS_4|1077_bp
atgccgagatcgtgctgcagccgctcgggggccctgttgctggccttgctgcttcaggcc
tccatggaagtgcgtggctggtgcctggagagcagccagtgtcaggacctcaccacggaa
agcaacctgctggagtgcatccgggcctgcaagcccgacctctcggccgagactcccatg
ttcccgggaaatggcgacgagcagcctctgaccgagaacccccggaagtacgtcatgggc
cacttccgctgggaccgattcggccgccgcaacagcagcagcagcggcagcagcggcgca
gggcagaagcgcgaggacgtctcagcgggcgaagactgcggcccgctgcctgagggcggc
cccgagccccgcagcgatggtgccaagccgggcccgcgcgagggcaagcgctcctactcc
atggagcacttccgctggggcaagccggtgggcaagaagcggcgcccagtgaaggtgtac
cctaacggcgccgaggacgagtcggccgaggccttccccctggagttcaagagggagctg
actggccagcgactccgggagggagatggccccgacggccctgccgatgacggcgcaggg
gcccaggccgacctggagcacagcctgctggtggcggccgagaagaaggacgagggcccc
tacaggatggagcacttccgctggggcagcccgcccaaggacaagcgctacggcggtttc
atgacctccgagaagagccagacgcccctggtgacgctgttcaaaaacgccatcatcaag
aacgcctacaagaagggcgaggcctgtgctggggtgaggagattacctactatcacactc
accttcacctttccgattctggcctatttggccagaatccaggttctactccatgtcagc
agacaacccaacactctactgagtgatggggatgaggggcagaaacatctggggatctca
ggttctaatgctggctctggaaagatgctccagggaggcgactgccaagtcccagaacca
gggctcacaggcagtgctcaggatgaagctgccacggggaaccctaatgttaagtag

>gi568815596f:24991324_25245093|GENSCAN_predicted_peptide_5|146_aa
MRARGFLENRAASAHPAGALELQEAISRRHRIRPNAVARPLRPSEPGGEALGAAPQGSRA
IAALEQREYDSPRLPHHSFQTMGKSEASPCADGDIYRQMRTRQMPAPARTQSAGSGSEGG
PGRLWLSAVPSSRQTFCADCGMRSRQ

>gi568815596f:24991324_25245093|GENSCAN_predicted_CDS_5|441_bp
atgagggcgcgcggctttcttgaaaacagagcagcctctgctcaccctgcaggcgctctg
gagctgcaggaggccatttctagaaggcaccggattcggcctaatgcggtggcgaggccg
ctgcgtccctcggagcccggtggggaggccctgggtgccgcgccccaaggctcgcgggcg
attgccgccctggaacagagagaatatgattccccacgacttccacatcacagtttccaa
acaatggggaaatcggaggcctccccgtgtgcagacggtgatatttaccgccaaatgcga
accaggcagatgccagccccagcacgcacgcagtcggccggctccggctccgaaggcgga
cctgggcgcctctggctctccgcggtcccgagttctcgacaaactttctgcgccgactgc
ggcatgagaagccgccagtag

>gi568815596f:24991324_25245093|GENSCAN_predicted_peptide_6|443_aa
NCFLECAYQYDDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKE
DPWNCYMCGHKGTYGLLRRREDWPSRLQMFFANNHDQEFDPPKVYPPVPAEKRKPIRVLS
LFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEW
GPFDLVIGGSPCNDLSIVNPARKGLYGRQPQLMAFSSDLSEGTGRLFFEFYRLLHDARPK
EGDDRPFFWLFENVVAMGVSDKRDISRFLESNPVMIDAKEVSAAHRARYFWGNLPGMNRP
LASTVNDKLELQECLEHGRIAKFSKVRTITTRSNSIKQGKDQHFPVFMNEKEDILWCTEM
ERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFACVPQRLLAIEHPIG
KQTFQESTRDLLAFETGLGVIDW

>gi568815596f:24991324_25245093|GENSCAN_predicted_CDS_6|1332_bp
aactgctttctggagtgtgcgtaccagtacgacgacgacggctaccagtcctactgcacc
atctgctgtgggggccgtgaggtgctcatgtgcggaaacaacaactgctgcaggtgcttt
tgcgtggagtgtgtggacctcttggtggggccgggggctgcccaggcagccattaaggaa
gacccctggaactgctacatgtgcgggcacaagggtacctacgggctgctgcggcggcga
gaggactggccctcccggctccagatgttcttcgctaataaccacgaccaggaatttgac
cctccaaaggtttacccacctgtcccagctgagaagaggaagcccatccgggtgctgtct
ctctttgatggaatcgctacagggctcctggtgctgaaggacttgggcattcaggtggac
cgctacattgcctcggaggtgtgtgaggactccatcacggtgggcatggtgcggcaccag
gggaagatcatgtacgtcggggacgtccgcagcgtcacacagaagcatatccaggagtgg
ggcccattcgatctggtgattgggggcagtccctgcaatgacctctccatcgtcaaccct
gctcgcaagggcctctacggtagacagccccagctgatggctttctcttccgacctctca
gagggcactggccggctcttctttgagttctaccgcctcctgcatgatgcgcggcccaag
gagggagatgatcgccccttcttctggctctttgagaatgtggtggccatgggcgttagt
gacaagagggacatctcgcgatttctcgagtccaaccctgtgatgattgatgccaaagaa
gtgtcagctgcacacagggcccgctacttctggggtaaccttcccggtatgaacaggccg
ttggcatccactgtgaatgataagctggagctgcaggagtgtctggagcatggcaggata
gccaagttcagcaaagtgaggaccattactacgaggtcaaactccataaagcagggcaaa
gaccagcattttcctgtcttcatgaatgagaaagaggacatcttatggtgcactgaaatg
gaaagggtatttggtttcccagtccactatactgacgtctccaacatgagccgcttggcg
aggcagagactgctgggccggtcatggagcgtgccagtcatccgccacctcttcgctccg
ctgaaggagtattttgcgtgtgtgccccagagacttcttgctattgaacatcctattgga
aagcaaactttccaagagagcacccgggacctgttagcttttgaaacaggcctgggtgtg
attgactggtag