Result of FASTA (ccds) for pF1KA0804
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0804, 1426 aa
  1>>>pF1KA0804 1426 - 1426 aa - 1426 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7563+/-0.00131; mu= 15.7792+/- 0.078
 mean_var=95.3738+/-18.711, 0's: 0 Z-trim(101.5): 47  B-trim: 2 in 1/50
 Lambda= 0.131329
 statistics sampled from 6536 (6545) to 6536 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.55), E-opt: 0.2 (0.201), width:  16
 Scan time:  4.550

The best scores are:                                      opt bits E(32554)
CCDS46972.1 VPS8 gene_id:23355|Hs108|chr3          (1426) 9394 1791.7       0
CCDS46971.1 VPS8 gene_id:23355|Hs108|chr3          (1428) 9380 1789.0       0


>>CCDS46972.1 VPS8 gene_id:23355|Hs108|chr3               (1426 aa)
 initn: 9394 init1: 9394 opt: 9394  Z-score: 9615.2  bits: 1791.7 E(32554):    0
Smith-Waterman score: 9394; 99.9% identity (100.0% similar) in 1426 aa overlap (1-1426:1-1426)

               10        20        30        40        50        60
pF1KA0 MENEPDHENVEQSLCAKTSEEELNKSFNLEASLSKFSYIDMDKELEFKNDLIDDKEFDIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MENEPDHENVEQSLCAKTSEEELNKSFNLEASLSKFSYIDMDKELEFKNDLIDDKEFDIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 QVDTPPTLESILNETDDEDESFVLEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKK
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS46 QVDTPPTLESILNETDDEDESFILEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFDQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 NQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 PGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 SKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 NYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDSVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDSVE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 KLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 QIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASKRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASKRK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 AIVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRKDLLFSQMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AIVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRKDLLFSQMY
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 DKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVEALIVHMDIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVEALIVHMDIT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 SLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVVMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVVMG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 NKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASPEEEIYPYIRTLLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASPEEEIYPYIRTLLH
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 FDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 AKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEK
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 AEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAM
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 DHIEELVSLKPCKAAELVATHFSGHIETVIKKLQNQVLLFKFLRSLLDPREGIHVNQELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DHIEELVSLKPCKAAELVATHFSGHIETVIKKLQNQVLLFKFLRSLLDPREGIHVNQELL
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 QISPCITEQFIELLCQFNPTQVIETLQVLECYRLEETIQITQKYQLHEVTAYLLEKKGDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QISPCITEQFIELLCQFNPTQVIETLQVLECYRLEETIQITQKYQLHEVTAYLLEKKGDI
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA0 HGAFLIMLERLQSKLQEVTHQGENTKEDPSLKDVEDTMVETIALCQRNSHNLNQQQREAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HGAFLIMLERLQSKLQEVTHQGENTKEDPSLKDVEDTMVETIALCQRNSHNLNQQQREAL
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA0 WFPLLEAMMAPQKLSSSAIPHLYSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYGKG
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS46 WFPLLEAMMAPQKLSSSAIPHLHSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYGKG
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA0 KLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSICL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSICL
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA0 QQYKRRQEMADEIIVFSCGHLYHSFCLQNKECTVEFEGQTRWTCYKCSSSNKVGKLSENS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QQYKRRQEMADEIIVFSCGHLYHSFCLQNKECTVEFEGQTRWTCYKCSSSNKVGKLSENS
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KA0 SEIKKGRITPSQVKMSPSYHQSKGDPTAKKGTSEPVLDPQQIQAFDQLCRLYRGSSRLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SEIKKGRITPSQVKMSPSYHQSKGDPTAKKGTSEPVLDPQQIQAFDQLCRLYRGSSRLAL
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      
pF1KA0 LTELSQNRSSESYRPFSGSQSAPAFNSIFQNENFQLQLIPPPVTED
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LTELSQNRSSESYRPFSGSQSAPAFNSIFQNENFQLQLIPPPVTED
             1390      1400      1410      1420      

>>CCDS46971.1 VPS8 gene_id:23355|Hs108|chr3               (1428 aa)
 initn: 8270 init1: 8270 opt: 9380  Z-score: 9600.9  bits: 1789.0 E(32554):    0
Smith-Waterman score: 9380; 99.7% identity (99.9% similar) in 1428 aa overlap (1-1426:1-1428)

               10        20        30        40        50        60
pF1KA0 MENEPDHENVEQSLCAKTSEEELNKSFNLEASLSKFSYIDMDKELEFKNDLIDDKEFDIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MENEPDHENVEQSLCAKTSEEELNKSFNLEASLSKFSYIDMDKELEFKNDLIDDKEFDIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 QVDTPPTLESILNETDDEDESFVLEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKK
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS46 QVDTPPTLESILNETDDEDESFILEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKK
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KA0 KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIF--
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS46 KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFGK
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KA0 DQNQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DQNQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDA
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KA0 HPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEP
              250       260       270       280       290       300

      300       310       320       330       340       350        
pF1KA0 LHSKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LHSKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVA
              310       320       330       340       350       360

      360       370       380       390       400       410        
pF1KA0 VQNYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VQNYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDS
              370       380       390       400       410       420

      420       430       440       450       460       470        
pF1KA0 VEKLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VEKLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSY
              430       440       450       460       470       480

      480       490       500       510       520       530        
pF1KA0 GGQIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GGQIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASK
              490       500       510       520       530       540

      540       550       560       570       580       590        
pF1KA0 RKAIVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRKDLLFSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RKAIVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRKDLLFSQ
              550       560       570       580       590       600

      600       610       620       630       640       650        
pF1KA0 MYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVEALIVHMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVEALIVHMD
              610       620       630       640       650       660

      660       670       680       690       700       710        
pF1KA0 ITSLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ITSLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVV
              670       680       690       700       710       720

      720       730       740       750       760       770        
pF1KA0 MGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASPEEEIYPYIRTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASPEEEIYPYIRTL
              730       740       750       760       770       780

      780       790       800       810       820       830        
pF1KA0 LHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLAR
              790       800       810       820       830       840

      840       850       860       870       880       890        
pF1KA0 QLAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QLAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMA
              850       860       870       880       890       900

      900       910       920       930       940       950        
pF1KA0 EKAEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EKAEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQK
              910       920       930       940       950       960

      960       970       980       990      1000      1010        
pF1KA0 AMDHIEELVSLKPCKAAELVATHFSGHIETVIKKLQNQVLLFKFLRSLLDPREGIHVNQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AMDHIEELVSLKPCKAAELVATHFSGHIETVIKKLQNQVLLFKFLRSLLDPREGIHVNQE
              970       980       990      1000      1010      1020

     1020      1030      1040      1050      1060      1070        
pF1KA0 LLQISPCITEQFIELLCQFNPTQVIETLQVLECYRLEETIQITQKYQLHEVTAYLLEKKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LLQISPCITEQFIELLCQFNPTQVIETLQVLECYRLEETIQITQKYQLHEVTAYLLEKKG
             1030      1040      1050      1060      1070      1080

     1080      1090      1100      1110      1120      1130        
pF1KA0 DIHGAFLIMLERLQSKLQEVTHQGENTKEDPSLKDVEDTMVETIALCQRNSHNLNQQQRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DIHGAFLIMLERLQSKLQEVTHQGENTKEDPSLKDVEDTMVETIALCQRNSHNLNQQQRE
             1090      1100      1110      1120      1130      1140

     1140      1150      1160      1170      1180      1190        
pF1KA0 ALWFPLLEAMMAPQKLSSSAIPHLYSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYG
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS46 ALWFPLLEAMMAPQKLSSSAIPHLHSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYG
             1150      1160      1170      1180      1190      1200

     1200      1210      1220      1230      1240      1250        
pF1KA0 KGKLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KGKLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSI
             1210      1220      1230      1240      1250      1260

     1260      1270      1280      1290      1300      1310        
pF1KA0 CLQQYKRRQEMADEIIVFSCGHLYHSFCLQNKECTVEFEGQTRWTCYKCSSSNKVGKLSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CLQQYKRRQEMADEIIVFSCGHLYHSFCLQNKECTVEFEGQTRWTCYKCSSSNKVGKLSE
             1270      1280      1290      1300      1310      1320

     1320      1330      1340      1350      1360      1370        
pF1KA0 NSSEIKKGRITPSQVKMSPSYHQSKGDPTAKKGTSEPVLDPQQIQAFDQLCRLYRGSSRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NSSEIKKGRITPSQVKMSPSYHQSKGDPTAKKGTSEPVLDPQQIQAFDQLCRLYRGSSRL
             1330      1340      1350      1360      1370      1380

     1380      1390      1400      1410      1420      
pF1KA0 ALLTELSQNRSSESYRPFSGSQSAPAFNSIFQNENFQLQLIPPPVTED
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ALLTELSQNRSSESYRPFSGSQSAPAFNSIFQNENFQLQLIPPPVTED
             1390      1400      1410      1420        




1426 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 19:44:58 2016 done: Wed Nov  2 19:44:59 2016
 Total Scan time:  4.550 Total Display time:  0.110

Function used was FASTA [36.3.4 Apr, 2011]
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