Result of FASTA (ccds) for pF1KA0660
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0660, 482 aa
  1>>>pF1KA0660 482 - 482 aa - 482 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9003+/-0.000989; mu= -4.9451+/- 0.060
 mean_var=348.0721+/-70.483, 0's: 0 Z-trim(115.9): 25  B-trim: 3 in 1/53
 Lambda= 0.068745
 statistics sampled from 16487 (16507) to 16487 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.507), width:  16
 Scan time:  3.910

The best scores are:                                      opt bits E(32554)
CCDS3571.1 G3BP2 gene_id:9908|Hs108|chr4           ( 482) 3307 341.4 1.3e-93
CCDS3572.1 G3BP2 gene_id:9908|Hs108|chr4           ( 449) 1646 176.7 4.6e-44
CCDS4319.1 G3BP1 gene_id:10146|Hs108|chr5          ( 466) 1600 172.1 1.1e-42


>>CCDS3571.1 G3BP2 gene_id:9908|Hs108|chr4                (482 aa)
 initn: 3307 init1: 3307 opt: 3307  Z-score: 1794.4  bits: 341.4 E(32554): 1.3e-93
Smith-Waterman score: 3307; 100.0% identity (100.0% similar) in 482 aa overlap (1-482:1-482)

               10        20        30        40        50        60
pF1KA0 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ
              430       440       450       460       470       480

         
pF1KA0 RR
       ::
CCDS35 RR
         

>>CCDS3572.1 G3BP2 gene_id:9908|Hs108|chr4                (449 aa)
 initn: 1701 init1: 1643 opt: 1646  Z-score: 904.5  bits: 176.7 E(32554): 4.6e-44
Smith-Waterman score: 3011; 93.2% identity (93.2% similar) in 482 aa overlap (1-482:1-449)

               10        20        30        40        50        60
pF1KA0 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP
       ::                                 :::::::::::::::::::::::::
CCDS35 PK---------------------------------PRVEAKPEVQSQPPRVREQRPRERP
                                               250       260       

              310       320       330       340       350       360
pF1KA0 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL
       270       280       290       300       310       320       

              370       380       390       400       410       420
pF1KA0 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
       330       340       350       360       370       380       

              430       440       450       460       470       480
pF1KA0 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ
       390       400       410       420       430       440       

         
pF1KA0 RR
       ::
CCDS35 RR
         

>>CCDS4319.1 G3BP1 gene_id:10146|Hs108|chr5               (466 aa)
 initn: 1595 init1: 860 opt: 1600  Z-score: 879.6  bits: 172.1 E(32554): 1.1e-42
Smith-Waterman score: 1981; 65.4% identity (80.3% similar) in 482 aa overlap (1-471:1-461)

               10        20        30        40        50        60
pF1KA0 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
       ::::::::::::::::::::::::.::..::::::.::::::::.:..::: .:::::..
CCDS43 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
       ::.::.: ::..::::::::::::::.:::::::::::::..:  :.:::::::::::::
CCDS43 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
        ::::::::.:::.:::::    : .::::.::::  :::: .:: : ..... .:.   
CCDS43 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEP-EERQQTPEVVPDDSGT-FYDQAV
              130       140       150        160       170         

              190       200             210        220       230   
pF1KA0 VTNGIEEPLEESSHEPEPEPESETKTE------ELKPQ-VEEKNLEELEEKSTTPPPAEP
       :.: .:: :::   ::::.:: : . :      : ::. : :..  :  .::..: ::. 
CCDS43 VSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADI
      180       190       200       210       220       230        

           240       250       260        270       280       290  
pF1KA0 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHV-KAPVSQPRVEAKPEVQSQPPRV-
       ..  ::  ..:::::::::::::::.:  .:::::: :.:.:::: :.::: :  : :  
CCDS43 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQ
      240       250       260       270       280       290        

              300        310       320       330       340         
pF1KA0 REQRPRE-RPGFPP-RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKE
       :.:: :: : ..:: ::::: :   ::.: . ::..:.:::::::.:::::..:..:::.
CCDS43 RDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKD
      300       310       320       330       340       350        

     350       360       370       380       390       400         
pF1KA0 FFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKT
       ::.:.:::::::::.   :::::::::::::::::::..:  .:::::::::::::::::
CCDS43 FFQSYGNVVELRINS---GGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT
      360       370          380       390       400       410     

     410       420       430       440       450       460         
pF1KA0 RAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRG
       :::::        :::: :   :::::::: .::::      :::: ::::.:: : : :
CCDS43 RAARE-------GDRRDNRL--RGPGGPRGGLGGGM------RGPP-RGGMVQKPGFGVG
         420                430       440              450         

     470       480  
pF1KA0 TGQMEGRFTGQRR
        :           
CCDS43 RGLAPRQ      
     460            




482 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 19:30:08 2016 done: Wed Nov  2 19:30:09 2016
 Total Scan time:  3.910 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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