Result of FASTA (ccds) for
pF1KA0590
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0590, 1462 aa
1>>>pF1KA0590 1462 - 1462 aa - 1462 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6496+/-0.00121; mu= 16.3277+/- 0.072
mean_var=89.7513+/-18.365, 0's: 0 Z-trim(102.8): 45 B-trim: 140 in 1/48
Lambda= 0.135380
statistics sampled from 7113 (7133) to 7113 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.567), E-opt: 0.2 (0.219), width: 16
Scan time: 3.840
The best scores are: opt bits E(32554)
CCDS10439.1 IFT140 gene_id:9742|Hs108|chr16 (1462) 9730 1911.8 0
>>CCDS10439.1 IFT140 gene_id:9742|Hs108|chr16 (1462 aa)
initn: 9730 init1: 9730 opt: 9730 Z-score: 10264.0 bits: 1911.8 E(32554): 0
Smith-Waterman score: 9730; 99.9% identity (99.9% similar) in 1462 aa overlap (1-1462:1-1462)
10 20 30 40 50 60
pF1KA0 MALYYDHQIEAPDAAGSPSFISWHPVHPFLAVAYISTTSTGSVDIYLEQGECVPDTHVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MALYYDHQIEAPDAAGSPSFISWHPVHPFLAVAYISTTSTGSVDIYLEQGECVPDTHVER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 PFRVASLCWHPTRLVLAVGWETGEVTVFNKQDKEQHTMPLTHTADITVLRWSPSGNCLLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PFRVASLCWHPTRLVLAVGWETGEVTVFNKQDKEQHTMPLTHTADITVLRWSPSGNCLLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 GDRLGVLLLWRLDQRGRVQGTPLLKHEYGKHLTHCIFRLPPPGEDLVQLAKAAVSGDEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GDRLGVLLLWRLDQRGRVQGTPLLKHEYGKHLTHCIFRLPPPGEDLVQLAKAAVSGDEKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 LDMFNWKKSSSGSLLKMGSHEGLLFFVSLMDGTVHYVDEKGKTTQVVSADSTIQMLFYME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LDMFNWKKSSSGSLLKMGSHEGLLFFVSLMDGTVHYVDEKGKTTQVVSADSTIQMLFYME
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 KREALVVVTENLRLSLYTVPPEGKAEEVMKVKLSGKTGRRADIALIEGSLLVMAVGEAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KREALVVVTENLRLSLYTVPPEGKAEEVMKVKLSGKTGRRADIALIEGSLLVMAVGEAAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 RFWDIERGENYILSPDEKFGFEKGENMNCVCYCKVKGLLAAGTDRGRVAMWRKVPDFLGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RFWDIERGENYILSPDEKFGFEKGENMNCVCYCKVKGLLAAGTDRGRVAMWRKVPDFLGS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 PGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNSVISVAILSERAMSSHFHQQVAAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNSVISVAILSERAMSSHFHQQVAAM
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 QVSPSLLNVCFLSTGVAHSLRTDMHISGVFATKDAVAVWNGRQVAIFELSGAAIRSAGTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QVSPSLLNVCFLSTGVAHSLRTDMHISGVFATKDAVAVWNGRQVAIFELSGAAIRSAGTF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 LCETPVLAMHEENVYTVESNRVQVRTWQGTVKQLLLFSETEGNPCFLDICGNFLVVGTDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LCETPVLAMHEENVYTVESNRVQVRTWQGTVKQLLLFSETEGNPCFLDICGNFLVVGTDL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 ALFKSFDLSRREAKAHCSCRSLAELVPGVGGIASLRCSSSGSTISILPSKADNSPDSKIC
: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AHFKSFDLSRREAKAHCSCRSLAELVPGVGGIASLRCSSSGSTISILPSKADNSPDSKIC
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 FYDVEMDTVTVFDFKTGQIDRRETLSFNEQETNKSHLFVDEGLKNYVPVNHFWDQSEPRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FYDVEMDTVTVFDFKTGQIDRRETLSFNEQETNKSHLFVDEGLKNYVPVNHFWDQSEPRL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 FVCEAVQETPRSQPQSANGQPQDGRAGPAADVLILSFFISEEHGFLLHESFPRPATSHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FVCEAVQETPRSQPQSANGQPQDGRAGPAADVLILSFFISEEHGFLLHESFPRPATSHSL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 LGMEVPYYYFTRKPEEADREDEVEPGCHHIPQMVSRRPLRDFVGLEDCDKATRDAMLHFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LGMEVPYYYFTRKPEEADREDEVEPGCHHIPQMVSRRPLRDFVGLEDCDKATRDAMLHFS
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 FFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREAE
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 QEPELEARVAVLATQLGMLEDAEQLYRKCKRHDLLNKFYQAAGRWQEALQVAEHHDRVHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QEPELEARVAVLATQLGMLEDAEQLYRKCKRHDLLNKFYQAAGRWQEALQVAEHHDRVHL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 RSTYHRYAGHLEASADCSRALSYYEKSDTHRFEVPRMLSEDLPSLELYVNKMKDKTLWRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RSTYHRYAGHLEASADCSRALSYYEKSDTHRFEVPRMLSEDLPSLELYVNKMKDKTLWRW
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 WAQYLESQGEMDAALHYYELARDHFSLVRIHCFQGNVQKAAQIANETGNLAASYHLARQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WAQYLESQGEMDAALHYYELARDHFSLVRIHCFQGNVQKAAQIANETGNLAASYHLARQY
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 ESQEEVGQAVHFYTRAQAFKNAIRLCKENGLDDQLMNLALLSSPEDMIEVARYYEEKGVQ
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
CCDS10 ESQEEVGQAVHFYTRAQAFKNAIRLCKENGLDDQLMNLALLSSPEDMIEAARYYEEKGVQ
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 MDRAVMLYHKAGHFSKALELAFATQQFVALQLIAEDLDETSDPALLARCSDFFIEHSQYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDRAVMLYHKAGHFSKALELAFATQQFVALQLIAEDLDETSDPALLARCSDFFIEHSQYE
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 RAVELLLAARKYQEALQLCLGQNMSITEEMAEKMTVAKDSSDLPEESRRELLEQIADCCM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RAVELLLAARKYQEALQLCLGQNMSITEEMAEKMTVAKDSSDLPEESRRELLEQIADCCM
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 RQGSYHLATKKYTQAGNKLKAMRALLKSGDTEKITFFASVSRQKEIYIMAANYLQSLDWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RQGSYHLATKKYTQAGNKLKAMRALLKSGDTEKITFFASVSRQKEIYIMAANYLQSLDWR
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 KEPEIMKNIIGFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLAKAKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KEPEIMKNIIGFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLAKAKAK
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 SPLDQETRLAQLQSRMALVKRFIQARRTYTEDPKESIKQCELLLEEPDLDSTIRIGDVYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SPLDQETRLAQLQSRMALVKRFIQARRTYTEDPKESIKQCELLLEEPDLDSTIRIGDVYG
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 FLVEHYVRKEEYQTAYRFLEEMRRRLPLANMSYYVSPQAVDAVHRGLGLPLPRTVPEQVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FLVEHYVRKEEYQTAYRFLEEMRRRLPLANMSYYVSPQAVDAVHRGLGLPLPRTVPEQVR
1390 1400 1410 1420 1430 1440
1450 1460
pF1KA0 HNSMEDARELDEEVVEEADDDP
::::::::::::::::::::::
CCDS10 HNSMEDARELDEEVVEEADDDP
1450 1460
1462 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:23:03 2016 done: Wed Nov 2 19:23:04 2016
Total Scan time: 3.840 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]