GENSCAN 1.0	Date run:  2-Nov-116	Time: 19:20:15

Sequence gi568815587r:78119275_78380862 : 261588 bp : 43.93% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  17439  17475   37  2  1   69  101    37 0.922   3.27
 1.02 Intr +  20196  20300  105  1  0   59   42    99 0.785   2.59
 1.03 Intr +  22321  22428  108  2  0   42   93   215 0.948  17.66
 1.04 Term +  28652  28662   11  0  2  106   54     0 0.213  -3.24
 1.05 PlyA +  33725  33730    6                               1.05

 2.04 PlyA -  34206  34201    6                               1.05
 2.03 Term -  49957  49819  139  0  1   93   43    43 0.216  -2.26
 2.02 Intr -  51339  51250   90  2  0   54  100    42 0.571   1.11
 2.01 Init -  55280  54502  779  2  2   68   98  1312 0.876 123.17
 2.00 Prom -  56211  56172   40                              -1.86

 3.00 Prom +  56821  56860   40                              -6.26
 3.01 Init +  57536  57597   62  1  2  116   37   105 0.914   8.92
 3.02 Intr +  59178  59277  100  0  1   55   67    60 0.209   0.71
 3.03 Intr +  63867  63924   58  2  1   49  113    57 0.021   2.76
 3.04 Term +  67232  67314   83  0  2   50   39    88 0.003  -2.04
 3.05 PlyA +  67871  67876    6                              -0.45

 4.00 Prom +  68383  68422   40                              -4.26
 4.01 Init +  73269  73441  173  2  2   98   43   148 0.976   8.21
 4.02 Intr +  76962  77644  683  0  2  144   96  1216 0.964 119.23
 4.03 Intr +  78662  78794  133  0  1  105   75   209 0.990  21.00
 4.04 Intr +  80321  80450  130  2  1   86   81   154 0.969  15.20
 4.05 Intr +  80859  80960  102  2  0   43   95   136 0.920  10.17
 4.06 Intr +  81376  81534  159  0  0   80  105   186 0.921  19.68
 4.07 Intr +  86568  86761  194  2  2  119   30   255 0.991  21.09
 4.08 Intr +  88256  88349   94  2  1   45  109    54 0.517   3.17
 4.09 Intr +  89583  89689  107  2  2   94   99   143 0.999  15.01
 4.10 Intr +  90174  91470 1297  0  1   85   99  1513 0.765 139.40
 4.11 Intr +  94372  94501  130  0  1   97   38   120 0.702   8.17
 4.12 Term +  95704  95777   74  2  2  106   43    95 0.941   4.87
 4.13 PlyA +  95936  95941    6                               1.05

 5.12 PlyA -  96048  96043    6                               1.05
 5.11 Term - 100141  99998  144  1  0  100   45   264 0.970  21.21
 5.10 Intr - 101170 101045  126  1  0   84   46    98 0.962   6.08
 5.09 Intr - 102505 102403  103  0  1   84  101   125 0.993  13.58
 5.08 Intr - 102921 102831   91  1  1   84  108    92 0.999   9.85
 5.07 Intr - 104402 104138  265  2  1   93  115   342 0.999  34.49
 5.06 Intr - 105928 105834   95  2  2   75  105    87 0.990   8.78
 5.05 Intr - 107777 107191  587  1  2  141   78   439 0.938  40.49
 5.04 Intr - 113155 113069   87  0  0   84   76    27 0.163   0.19
 5.03 Intr - 131075 130883  193  0  1   92   97   128 0.466  12.65
 5.02 Intr - 161627 161327  301  2  1   61   80   476 0.922  40.41
 5.01 Init - 166486 166442   45  1  0   84   90    38 0.619   2.28
 5.00 Prom - 175126 175087   40                              -2.46

 6.00 Prom + 192014 192053   40                              -2.66
 6.01 Init + 200787 200859   73  2  1   85   21   110 0.233   3.23
 6.02 Intr + 210591 210674   84  1  0   95   95    35 0.637   4.69
 6.03 Term + 212762 212970  209  0  2   99   42    73 0.652   1.30
 6.04 PlyA + 213324 213329    6                               1.05

 7.00 Prom + 238699 238738   40                              -2.46
 7.01 Init + 243537 243581   45  2  0   43   93    39 0.642   0.58
 7.02 Term + 248882 249049  168  1  0   90   31   128 0.878   5.18
 7.03 PlyA + 249280 249285    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  69545  69299  247  0  1   60   90   121 0.856   6.02
S.002 Intr -  69777  69618  160  0  1  106   92    41 0.868   5.86
S.003 Init -  72251  72246    6  2  0  123   92     0 0.880   4.77
S.004 Term + 151455 151509   55  0  1   98   53   107 0.804   5.23


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587r:78119275_78380862|GENSCAN_predicted_peptide_1|86_aa
MAQLDVIDGIFQSPGRASPLLCGDEKAFEKSHPERQSRKPIASTRGNSTVKWAAEDDDDD
DLDTEKQKTNEDDQTAKKDKLKEGEK

>gi568815587r:78119275_78380862|GENSCAN_predicted_CDS_1|261_bp
atggctcaactagatgtcatagatggcatcttccaatcccctggccgtgcgagtccctta
ctatgtggggatgagaaggcatttgagaagagtcaccccgagcgccaaagccgaaaacca
attgccagtacccgtggcaattctacagtcaaatgggcagctgaagatgatgatgatgat
gatcttgacaccgagaagcagaagaccaatgaagatgaccagacagcaaaaaaggataag
ttaaaagaaggtgaaaaatga

>gi568815587r:78119275_78380862|GENSCAN_predicted_peptide_2|335_aa
MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVFRYIL
NFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEVELSKAEKNAMLNITLNQRV
QTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHLQD
PNHLTLDWVANVEGLPEEEYTKQNLKRLWVVPANKQINSFQVFVEEVLKIALSDGFCIDS
SHPHALDFMNNKIIRLIRYRLGELSLLLGKSMRKTENKRSAVMAAPSTDGGLWADGGGWL
GNVACDQLQEQNNPDNRPIKGRDESLAALSAQTAW

>gi568815587r:78119275_78380862|GENSCAN_predicted_CDS_2|1008_bp
atgtccgaccccatcacgctgaacgtcggggggaagctctatacaacctcactggcgacc
ctgaccagcttccctgactccatgctaggcgccatgttcagcgggaagatgcccaccaag
agggacagccagggcaactgcttcattgaccgtgacggcaaagtgttccgctatatcctc
aacttcctgcggacctcccaccttgacctgcctgaggacttccaggagatggggctgctc
cgcagggaggccgacttctaccaggtgcagcccctgattgaggccctgcaggagaaggaa
gtggagctctccaaggccgagaagaatgccatgctcaacatcacactgaaccagcgtgtg
cagacggtccacttcactgtgcgcgaggcaccccagatctacagcctctcctcttccagc
atggaggtcttcaacgccaacatcttcagcacctcctgcctcttcctcaagctccttggc
tctaagctcttctactgctccaatggcaatctctcctccatcaccagccacttgcaggac
cccaaccacctgactctggactgggtggccaatgtggagggcctgccagaggaggagtac
accaagcagaacctcaagaggctctgggtggtgcccgccaacaagcagatcaacagcttc
caggtcttcgtggaagaggtactgaaaatcgctctgagcgatggcttctgcatcgattct
tctcacccacatgctctggattttatgaacaataagattattcgattaatacggtacagg
ttaggtgaactcagccttctgcttggcaaaagcatgagaaagacggagaacaaacgttca
gcagtgatggcagcaccatcgacagacggggggctctgggctgatgggggtggctggctg
ggaaacgtggcctgtgatcagctccaggagcaaaacaaccctgataacaggcccatcaaa
gggagggacgagagtctggcagctctgtctgcccagacagcctggtga

>gi568815587r:78119275_78380862|GENSCAN_predicted_peptide_3|100_aa
MTKSCLYNNNNNNNNNNNKAGATVSIITNPRPCYKRQNDMTRGEFHESAEVCSQKPGLPG
ETDDSWTFTGKVQAVQPWARSWADDDDHNNNKHYNGNNNG

>gi568815587r:78119275_78380862|GENSCAN_predicted_CDS_3|303_bp
atgacgaaatcctgtctctacaacaacaacaacaacaacaacaacaacaacaacaaagca
ggggccacagtgtccatcatcacaaatccacggccctgctacaaaaggcaaaatgacatg
acacgaggggagtttcatgagtcggcggaggtttgcagtcagaaaccagggcttcctgga
gaaactgatgattcctggactttcacaggaaaagttcaagctgtgcagccctgggcacgt
tcctgggcagatgatgatgatcataacaacaacaaacactacaacggcaataataatggc
taa

>gi568815587r:78119275_78380862|GENSCAN_predicted_peptide_4|1091_aa
MVTAVLRLPAWELGQVGRACLLWPGYGLSRGCRLALEIRALMEQLYLNCQLPGLCGVSAG
AMDKILEAVVTSSYPVSVKQGLVRRVLEAARQPLEREQCLALLALGARLYVGGAEELPRR
VGCQLLHVAGRHHPDVFAEFFSARRVLRLLQGGAGPPGPRALACVQLGLQLLPEGPAADE
VFALLRREVLRTVCERPGPAACAQVARLLARHPRCVPDGPHRLLFCQQLVRCLGRFRCPA
EGEEGAVEFLEQAQQVSGLLAQLWRAQPAAILPCLKELFAVISCAEEEPPSSALASVVQH
LPLELMDGVVRNLSNDDSVTDSQMLTAISRMIDWVSWPLGKNIDKWIIALLKGLAAVKKF
SILIEVSLTKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPPMVASLV
KEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKDLHVPNEDRIKQLLGQDAWT
SQKSELAGFYPRLMAKSDTGKIGLINLGNTCYVNSILQALFMASDFRHCVLRLTENNSQP
LMTKLQWLFGFLEHSQRPAISPENFLSASWTPWFSPGTQQDCSEYLKYLLDRLHEEEKTG
TRICQKLKQSSSPSPPEEPPAPSSTSVEKMFGGKIVTRICCLCCLNVSSREEAFTDLSLA
FPPPERCRRRRLGSVMRPTEDITARELPPPTSAQGPGRVGPRRQRKHCITEDTPPTSLYI
EGLDSKEAGGQSSQEERIEREEEGKEERTEKEEVGEEEESTRGEGEREKEEEVEEEEEKV
EKETEKEAEQEKEEDSLGAGTHPDAAIPSGERTCGSEGSRSVLDLVNYFLSPEKLTAENR
YYCESCASLQDAEKVVELSQGPCYLILTLLRFSFDLRTMRRRKILDDVSIPLLLRLPLAG
GRGQAYDLCSVVVHSGVSSESGHYYCYAREGAARPAASLGTADRPEPENQWYLFNDTRVS
FSSFESVSNVTSFFPKDTAYVLFYRQRPREGPEAELGSSRVRTEPTLHKDLMEAISKDNI
LYLQEQEKEARSRAAYISALPTSPHWGRGFDEDKDEDEGSPGGCNPAGAACCDGGVEFGP
NVTDPQDVTSK

>gi568815587r:78119275_78380862|GENSCAN_predicted_CDS_4|3276_bp
atggtgacagctgtcctcagactgcctgcgtgggagttggggcaggtgggcagggcttgc
ttgctgtggccaggctacggactgagcagaggctgccggctggccttggagatcagagct
ctcatggagcagctctatttgaactgtcagctgccaggcttatgtggtgttagcgcgggc
gccatggacaagatcttggaggcggtggtgacgtcgtcatacccggtcagcgtgaagcag
gggctggttcggcgcgtgctggaggcggcgcggcagccgctggagcgtgagcagtgcctg
gcgctgctggcgctgggcgcgcgcctctacgtgggcggcgcggaggagctgccgcgccgc
gtgggctgccagctgctgcacgtggccggccgccaccaccccgacgtcttcgccgagttc
ttcagcgcgcgtcgcgtgctgcgcctgctgcagggtggcgccggccccccgggcccccgc
gcgctcgcctgcgtgcagctgggtctgcagctgctgcccgaggggcctgcggccgacgag
gtgttcgcgctgctgcggcgcgaggtgctgcgcaccgtgtgcgagcgcccgggccccgcg
gcctgcgcgcaggtggcacggctgctggctcgccacccgcgctgtgtgcccgacggaccc
caccgcctgctcttctgccagcagctggtgcgttgcctcggccgcttccgctgcccagcc
gaaggcgaggagggcgccgtggagttcctagagcaggcccagcaggtgagcgggctcctg
gcgcagctgtggcgcgcacagcccgccgccatcctgccctgcctcaaagagctgttcgca
gtcatctcctgcgcagaggaggagccaccatctagcgccctggccagcgtggtccagcac
ctcccattggagctcatggatggtgttgtccggaacctcagcaatgatgacagtgtgaca
gactcgcagatgctgactgccattagcaggatgattgactgggtgtcctggcccctgggg
aagaatattgacaagtggatcattgcactgctgaagggcctggctgctgttaagaagttc
agcatcttgatcgaggtttcgctcaccaaaattgagaaggttttctctaagctgctgtac
cccatcgtccggggagctgccttgtctgtgctcaagtacatgctcctgaccttccagcac
tcccacgaagccttccacctgctcctccctcacatcccccccatggtggcctctctggtc
aaggaggactcgaactcggggaccagctgcctggagcagctggcggagctggtccactgc
atggtgttccggttcccgggcttcccggatctgtatgagcctgtcatggaggccatcaag
gacctccatgttcccaatgaggaccgcatcaagcagctgctggggcaggatgcctggact
tcgcagaagagcgagctggcgggtttctatccccggctcatggccaagtcagacacgggc
aagattggtctcatcaacctgggcaacacatgctatgtcaacagcatccttcaggcctta
ttcatggcgtctgacttcagacattgtgtgctccgcttgactgagaacaactcacagccc
ctgatgaccaagctgcagtggctctttggcttcctagaacacagccagcggcctgccatt
tccccagagaacttcctctccgcatcctggacgccctggttcagccctggcacccagcag
gactgctcggagtatctgaagtacctgctggatcggctgcacgaagaggagaaaacgggc
acaaggatctgccagaaactcaagcagtccagctcgccctctccgcccgaggagcccccg
gccccaagttcaacctctgtggaaaaaatgtttggaggcaagatagtgactcggatctgc
tgtctctgctgcctcaacgtctcctcccgggaggaggccttcacggacctctctctcgcc
ttccctcctcctgagcgctgtcgccgccgccgcctgggctctgtgatgcgccccacagaa
gacatcacagcccgggagttgcccccaccaaccagtgcacaggggccaggcagggtgggt
cctcggaggcaaaggaaacactgcatcacagaggacaccccccccaccagcctgtacatc
gaaggcctggactccaaggaagctggtgggcagagcagtcaggaggaaaggatagagagg
gaggaagaagggaaggaggagagaacggagaaggaagaagtgggggaggaggaggaaagc
accagaggggaaggagagagggagaaagaggaggaggtggaagaggaagaagagaaggtg
gagaaggagacagaaaaggaggctgagcaggaaaaggaagaagacagcctgggagcgggg
acccacccggatgctgccatcccctccggggagcggacatgtggctctgagggctcccgc
tccgtcctggacctggttaactacttcctgtcccccgagaagctgacagcagaaaaccgc
tactactgcgagtcgtgtgcctccctgcaggatgccgagaaggtggtggagctgagccaa
gggccgtgctacctcatcctcacactgctgcgcttctctttcgacctgcgcaccatgcgg
cgccgcaagatcctggatgacgtctccatccccctgctgctccgcctgccactggctggt
ggccgtggccaggcctatgacctctgcagtgtggtggtgcactctggagtgtcttcggag
agtggtcactactactgctatgcccgtgagggcgctgcccgccctgccgcttctctggga
actgccgataggccagagcccgagaaccagtggtacctgttcaatgacactcgggtgtcc
ttctcttccttcgaatctgtcagcaacgtcacctccttcttccctaaggacacagcctat
gtgctgttttaccggcagcggcccagggaggggcccgaggctgagttgggctcttctaga
gtccggacagagcccaccctgcacaaggacttgatggaagccatttccaaagacaacatc
ctttacctacaggagcaggagaaggaggcccggagcagggcggcctacatctctgcactc
cccacatctccgcactgggggaggggctttgatgaagacaaggatgaggatgaaggctct
ccagggggctgcaatcctgcaggggctgcctgctgtgatggtggtgtggagtttgggccc
aatgtcacagaccctcaagatgtcacatctaagtga

>gi568815587r:78119275_78380862|GENSCAN_predicted_peptide_5|678_aa
MPWLTPVIPALWEAEAWKKRWFILRSGRMSGDPDVLEYYKNDHSKKPLRIINLNFCEQVD
AGLTFNKKELQDSFVFDIKTSERTFYLVAETEEDMNKWVQSICQICGFNQAEESTAELSS
SSQHLLRERKSSAPSHSSQPTLFTFEPPVSNHMQPTLSTSAPQEYLYLHQCISRRAENAS
LWGLIPDSSQCLSSYFKKAVKPVTDDTLMSASFSQGTRASFLMRSDTAVQKLAQGNGHCV
NGISGQVHGFYSLPKPSRHNTEFRDSTYDLPRSLASHGHTKGSLTGSETDNEDVYTFKTP
SNTLCREFGDLLVDNMDVPATPLSAYQIPRTFTLDKNHNAMTVATPGDSAIAPPPRPPKP
SQAETPRWGSPQQRPPISENSRSVAATIPRRNTLPAMDNSRLHRASSCETYEYPQRGGES
AGRSAESMSDGVGSFLPGKMIVGRSDSTNSEDNYVPMNPGSSTLLAMERAGDNSQSVYIP
MSPGAHHFDSLGYPSTTLPVHRGPSRGSEIQPPPVNRNLKPDRKAKPTPLDLRNNTVIDE
LPFKSPITKSWSRANHTFNSSSSQYCRPISTQSITSTDSGDSEENYVPMQNPVSASPVPS
GTNSPAPKKSTGSVDYLALDFQPSSPSPHRKPSTSSVTSDEKVDYVQVDKEKTQALQNTM
QEWTDVRQSSEPSKGAKL

>gi568815587r:78119275_78380862|GENSCAN_predicted_CDS_5|2037_bp
atgccgtggctcacgcctgtaatcccagcactttgggaggctgaggcctggaagaaacgc
tggtttatcctgcggagtggccggatgagcggtgacccagatgttctggaatactacaag
aacgatcactccaagaagcctctgcggatcatcaacctgaacttctgtgagcaggtagat
gcaggcctgacctttaacaagaaggagctgcaggatagttttgtgtttgacatcaagacc
agtgaacgcaccttttacctggtggctgagacagaagaggacatgaataagtgggtccag
agcatctgccagatctgtggcttcaatcaggctgaggagagcacagctgagctcagcagc
tctagccagcaccttctccgagagcgcaagtcctcagccccatcacactccagccagcca
actctgttcacgtttgaaccccctgtgtcaaaccacatgcagcccaccttgtccaccagc
gcacctcaggagtatctctacttgcaccagtgcataagccgaagagcagaaaatgcaagc
ctttggggcctcattccagattctagccagtgtctgtcttcttatttcaagaaggctgtt
aaacctgtaacagatgatacattgatgagtgccagcttctctcagggcaccagagcctct
tttctcatgaggagtgacacagctgtacaaaaacttgcccagggcaatggacactgtgtc
aacgggatcagtggtcaagtccatggcttctatagccttcccaagccgagccggcacaat
acagaattcagagacagtacctacgacctcccccgcagcctggcctcccatggccacacc
aagggcagcctcacaggctccgagacagataatgaggatgtgtacaccttcaagacgccc
agcaacaccctgtgcagggagttcggggacctcctggtagacaatatggatgttccggcc
accccactctcagcctaccagatccctaggacattcactctggacaaaaaccacaatgcc
atgacagtggccactcctggggactcagccatagctcccccaccccgcccccccaagcca
agtcaggcagaaacacctcgatggggcagtcctcagcagagaccgccaatcagtgaaaat
agcagatctgtcgctgccaccatccccagacgcaacaccctccctgcaatggacaacagc
cgacttcaccgagcttcttcctgtgagacctacgagtacccacagcgtggtggagagagt
gcaggccggtctgctgaatccatgagtgatggagttggctctttcctgccagggaaaatg
attgtgggccgatcggacagcaccaattctgaagacaactatgtgcccatgaatccaggt
tcttccaccctgttggccatggaacgagcaggtgataattcccagagcgtctacatccca
atgagcccaggggcccatcactttgactcacttggctacccatcaacaacccttcctgtg
caccgaggccccagcagaggaagtgagattcagccaccccctgtcaaccgcaacctcaaa
cctgatcggaaagcaaagccaacaccacttgacctgaggaacaacaccgtcatcgatgaa
ctccccttcaagtcacctatcaccaagtcttggtctagggccaaccacaccttcaactcc
agctcctcccagtactgccgccccatctccacccagagcatcaccagcacagactcagga
gacagcgaagagaactatgtccctatgcaaaacccagtgtctgcatctcccgttcccagt
ggcacgaacagtcctgcccctaagaagagcaccggcagcgttgattatctggccctggac
ttccagccgagctccccaagcccccaccgcaagccatctacttcatccgtcacctctgat
gagaaggtggactacgttcaggtggacaaggagaagacccaggccctgcagaacaccatg
caggagtggacagacgtgcggcagtcctcagagccttccaagggtgccaagctgtga

>gi568815587r:78119275_78380862|GENSCAN_predicted_peptide_6|121_aa
MGFRHVGQAGLELLASICPCLASQIRKSGKLKVTFTKFVCRQSANYLHSYKTGKDKKGSF
LVLYKVGSLWRGTEQTPSKTADLIHPQTDTRREEDFRKWADYVQEKISCKQLMGNLHEKQ
D

>gi568815587r:78119275_78380862|GENSCAN_predicted_CDS_6|366_bp
atggggtttcgccatgttggccaggctggtctggaactcctggcctcgatctgcccctgc
ttggcctctcaaattagaaaatctggaaaactaaaagtcacctttaccaaatttgtttgc
aggcagtctgccaattacttgcattcatataagactggaaaagacaagaaaggcagcttt
ctggtactctacaaagtggggagcctgtggcggggaacagaacaaaccccctccaaaact
gctgacttgattcatccccaaactgacacaaggcgggaggaagacttcaggaaatgggca
gattatgtccaagaaaagatttcctgcaagcagttaatgggaaacttacatgaaaagcag
gactaa

>gi568815587r:78119275_78380862|GENSCAN_predicted_peptide_7|70_aa
MLLQVYDYQAKKDIKHLLATSMSCHMLRYFFAKNGKTILFNQEVHEQQLNQCICLDGLII
QQINTVHEYD

>gi568815587r:78119275_78380862|GENSCAN_predicted_CDS_7|213_bp
atgctgctgcaggtatatgactaccaagcaaaaaaagatattaagcacttactggccaca
tccatgagttgccacatgctgaggtatttctttgctaagaatggcaagaccattttgttc
aaccaggaagtccatgaacagcaactcaaccaatgcatctgccttgatggtttgattatt
caacagattaatactgttcatgaatatgattaa