Result of FASTA (omim) for
pF1KA0464
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0464, 324 aa
1>>>pF1KA0464 324 - 324 aa - 324 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2514+/-0.000335; mu= 7.3515+/- 0.021
mean_var=117.5268+/-23.750, 0's: 0 Z-trim(118.4): 97 B-trim: 1476 in 1/52
Lambda= 0.118306
statistics sampled from 31260 (31360) to 31260 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.368), width: 16
Scan time: 6.740
The best scores are: opt bits E(85289)
NP_001158229 (OMIM: 605551) carboxyl-terminal PDZ ( 501) 2036 358.1 2.1e-98
NP_055512 (OMIM: 605551) carboxyl-terminal PDZ lig ( 506) 2016 354.7 2.3e-97
NP_001239597 (OMIM: 608165) PTB domain-containing ( 291) 199 44.5 0.00033
XP_016859795 (OMIM: 608165) PREDICTED: PTB domain- ( 304) 199 44.5 0.00034
NP_057399 (OMIM: 608165) PTB domain-containing eng ( 304) 199 44.5 0.00034
XP_006712652 (OMIM: 608165) PREDICTED: PTB domain- ( 322) 199 44.5 0.00036
XP_016859792 (OMIM: 608165) PREDICTED: PTB domain- ( 366) 199 44.5 0.0004
XP_016859793 (OMIM: 608165) PREDICTED: PTB domain- ( 366) 199 44.5 0.0004
XP_016859794 (OMIM: 608165) PREDICTED: PTB domain- ( 366) 199 44.5 0.0004
XP_011509631 (OMIM: 608165) PREDICTED: PTB domain- ( 376) 199 44.5 0.00041
XP_006712646 (OMIM: 608165) PREDICTED: PTB domain- ( 379) 199 44.5 0.00041
XP_006712643 (OMIM: 608165) PREDICTED: PTB domain- ( 379) 199 44.5 0.00041
XP_006712644 (OMIM: 608165) PREDICTED: PTB domain- ( 379) 199 44.5 0.00041
XP_006712645 (OMIM: 608165) PREDICTED: PTB domain- ( 379) 199 44.5 0.00041
XP_006712647 (OMIM: 608165) PREDICTED: PTB domain- ( 379) 199 44.5 0.00041
XP_006712648 (OMIM: 608165) PREDICTED: PTB domain- ( 379) 199 44.5 0.00041
NP_001191008 (OMIM: 607815) ankyrin repeat and ste ( 290) 193 43.5 0.00066
NP_001190995 (OMIM: 607815) ankyrin repeat and ste ( 357) 193 43.5 0.00079
NP_001190996 (OMIM: 607815) ankyrin repeat and ste ( 394) 193 43.5 0.00086
XP_005269089 (OMIM: 607815) PREDICTED: ankyrin rep ( 266) 190 42.9 0.00087
NP_001191009 (OMIM: 607815) ankyrin repeat and ste ( 266) 190 42.9 0.00087
XP_016875154 (OMIM: 607815) PREDICTED: ankyrin rep ( 425) 193 43.5 0.00092
NP_001190994 (OMIM: 607815) ankyrin repeat and ste ( 290) 190 43.0 0.00094
XP_016875151 (OMIM: 607815) PREDICTED: ankyrin rep ( 479) 193 43.6 0.001
NP_001190999 (OMIM: 607815) ankyrin repeat and ste ( 426) 190 43.0 0.0013
XP_016875153 (OMIM: 607815) PREDICTED: ankyrin rep ( 429) 190 43.0 0.0013
NP_001190998 (OMIM: 607815) ankyrin repeat and ste ( 450) 190 43.0 0.0014
XP_016875152 (OMIM: 607815) PREDICTED: ankyrin rep ( 476) 190 43.1 0.0014
XP_016875150 (OMIM: 607815) PREDICTED: ankyrin rep ( 479) 190 43.1 0.0014
XP_016875149 (OMIM: 607815) PREDICTED: ankyrin rep ( 486) 190 43.1 0.0015
NP_001191010 (OMIM: 607815) ankyrin repeat and ste ( 254) 185 42.1 0.0015
NP_858056 (OMIM: 607815) ankyrin repeat and steril ( 510) 190 43.1 0.0015
XP_016875148 (OMIM: 607815) PREDICTED: ankyrin rep ( 511) 190 43.1 0.0015
XP_006719576 (OMIM: 607815) PREDICTED: ankyrin rep (1199) 193 43.8 0.0022
NP_064525 (OMIM: 607815) ankyrin repeat and steril ( 414) 185 42.2 0.0023
XP_006719572 (OMIM: 607815) PREDICTED: ankyrin rep (1259) 193 43.8 0.0023
XP_006719569 (OMIM: 607815) PREDICTED: ankyrin rep (1283) 193 43.8 0.0024
XP_006719568 (OMIM: 607815) PREDICTED: ankyrin rep (1284) 193 43.8 0.0024
NP_001190997 (OMIM: 607815) ankyrin repeat and ste ( 460) 185 42.2 0.0025
XP_006719575 (OMIM: 607815) PREDICTED: ankyrin rep (1200) 190 43.2 0.0032
XP_016875146 (OMIM: 607815) PREDICTED: ankyrin rep (1226) 190 43.2 0.0032
XP_016875145 (OMIM: 607815) PREDICTED: ankyrin rep (1250) 190 43.3 0.0033
XP_011536873 (OMIM: 607815) PREDICTED: ankyrin rep (1251) 190 43.3 0.0033
XP_005269086 (OMIM: 607815) PREDICTED: ankyrin rep (1256) 190 43.3 0.0033
XP_005269085 (OMIM: 607815) PREDICTED: ankyrin rep (1260) 190 43.3 0.0033
XP_016875141 (OMIM: 607815) PREDICTED: ankyrin rep (1281) 190 43.3 0.0034
XP_006719567 (OMIM: 607815) PREDICTED: ankyrin rep (1284) 190 43.3 0.0034
XP_016875140 (OMIM: 607815) PREDICTED: ankyrin rep (1285) 190 43.3 0.0034
XP_006719577 (OMIM: 607815) PREDICTED: ankyrin rep (1184) 185 42.4 0.0057
XP_016875147 (OMIM: 607815) PREDICTED: ankyrin rep (1188) 185 42.4 0.0057
>>NP_001158229 (OMIM: 605551) carboxyl-terminal PDZ liga (501 aa)
initn: 2206 init1: 2036 opt: 2036 Z-score: 1887.5 bits: 358.1 E(85289): 2.1e-98
Smith-Waterman score: 2036; 99.7% identity (99.7% similar) in 311 aa overlap (1-311:1-311)
10 20 30 40 50 60
pF1KA0 MPSKTKYNLVDDGHDLRIPLHNEDAFQHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPSKTKYNLVDDGHDLRIPLHNEDAFQHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIRY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 EFKAKNIKKKKVSIMVSVDGVKVILKKKKKKKEWTWDESKMLVMQDPIYRIFYVSHDSQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFKAKNIKKKKVSIMVSVDGVKVILKKKKKKKEWTWDESKMLVMQDPIYRIFYVSHDSQD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 LKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQNADGQED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQNADGQED
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 GESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVTDLDAVGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVTDLDAVGK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 EGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPGLGTETPLSTHHQMQLLQQLLQQQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPGLGTETPLSTHHQMQLLQQLLQQQQQ
250 260 270 280 290 300
310 320
pF1KA0 QTQVAVAQVLLSLLPTSQAPLSWA
::::::::: :
NP_001 QTQVAVAQVHLLKDQLAAEAAARLEAQARVHQLLLQNKDMLQHISLLVKQVQELELKLSG
310 320 330 340 350 360
>>NP_055512 (OMIM: 605551) carboxyl-terminal PDZ ligand (506 aa)
initn: 2133 init1: 1448 opt: 2016 Z-score: 1869.0 bits: 354.7 E(85289): 2.3e-97
Smith-Waterman score: 2016; 98.1% identity (98.1% similar) in 316 aa overlap (1-311:1-316)
10 20 30 40 50 60
pF1KA0 MPSKTKYNLVDDGHDLRIPLHNEDAFQHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MPSKTKYNLVDDGHDLRIPLHNEDAFQHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIRY
10 20 30 40 50 60
70 80 90 100 110
pF1KA0 EFKAKNIKKKKVSIMVSVDGVKVILKKKKK-----KKEWTWDESKMLVMQDPIYRIFYVS
:::::::::::::::::::::::::::::: :::::::::::::::::::::::::
NP_055 EFKAKNIKKKKVSIMVSVDGVKVILKKKKKLLLLQKKEWTWDESKMLVMQDPIYRIFYVS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KA0 HDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 HDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQNA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA0 DGQEDGESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVTDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DGQEDGESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVTDL
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA0 DAVGKEGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPGLGTETPLSTHHQMQLLQQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DAVGKEGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPGLGTETPLSTHHQMQLLQQLL
250 260 270 280 290 300
300 310 320
pF1KA0 QQQQQQTQVAVAQVLLSLLPTSQAPLSWA
:::::::::::::: :
NP_055 QQQQQQTQVAVAQVHLLKDQLAAEAAARLEAQARVHQLLLQNKDMLQHISLLVKQVQELE
310 320 330 340 350 360
>>NP_001239597 (OMIM: 608165) PTB domain-containing engu (291 aa)
initn: 195 init1: 102 opt: 199 Z-score: 196.6 bits: 44.5 E(85289): 0.00033
Smith-Waterman score: 239; 26.4% identity (55.8% similar) in 269 aa overlap (20-281:14-240)
10 20 30 40 50
pF1KA0 MPSKTKYNLVDDGHDLRIPLHNEDAF-QHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIR
.:. .:. .: : ..::..:: .: .:.. . :.:...
NP_001 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLK
10 20 30 40 50
60 70 80 90 100 110
pF1KA0 YEFKAKNIKKK------KVSIMVSVDGVKVILKKKKKKKEWTWDESKMLVMQDPIYRIFY
. :..:::. :: ...:. :::.. : :. .. . ..:: .
NP_001 F---ARHIKKSEGQKIPKVELQISIYGVKILEPKTKEVQH-----------NCQLHRISF
60 70 80 90 100
120 130 140 150 160 170
pF1KA0 VSHDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQ
. :. : .::..: .:. :: : :: :.: : .:. :.::::.. .. :.
NP_001 CADDKTDKRIFTFICKDSESNKHLCYVFDSEK--CAEEITLTIGQAFDLAYRKFLE----
110 120 130 140 150
180 190 200 210 220 230
pF1KA0 NADGQEDGESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVT
.: .: :... :..: .. .. . . .:. .: :: . .:
NP_001 --SGGKDVETRK----------QIAGLQK----RIQDLETENMELKNKVQD-LENQLRIT
160 170 180 190
240 250 260 270 280 290
pF1KA0 DLDAVGKEGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPGLGTETPLSTHHQMQLLQQ
...: .:: : .. : :. :: . .:: : ::. :
NP_001 QVSA--PPAGSMTPKSPSTDIFDMIPFSP---ISHQSSMPTRNGTQPPPVPSRSTEIKRD
200 210 220 230 240 250
300 310 320
pF1KA0 LLQQQQQQTQVAVAQVLLSLLPTSQAPLSWA
NP_001 LFGAEPFDPFNCGAADFPPDIQSKLDEMQRQRWRGSKWD
260 270 280 290
>>XP_016859795 (OMIM: 608165) PREDICTED: PTB domain-cont (304 aa)
initn: 195 init1: 102 opt: 199 Z-score: 196.3 bits: 44.5 E(85289): 0.00034
Smith-Waterman score: 239; 26.4% identity (55.8% similar) in 269 aa overlap (20-281:14-240)
10 20 30 40 50
pF1KA0 MPSKTKYNLVDDGHDLRIPLHNEDAF-QHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIR
.:. .:. .: : ..::..:: .: .:.. . :.:...
XP_016 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLK
10 20 30 40 50
60 70 80 90 100 110
pF1KA0 YEFKAKNIKKK------KVSIMVSVDGVKVILKKKKKKKEWTWDESKMLVMQDPIYRIFY
. :..:::. :: ...:. :::.. : :. .. . ..:: .
XP_016 F---ARHIKKSEGQKIPKVELQISIYGVKILEPKTKEVQH-----------NCQLHRISF
60 70 80 90 100
120 130 140 150 160 170
pF1KA0 VSHDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQ
. :. : .::..: .:. :: : :: :.: : .:. :.::::.. .. :.
XP_016 CADDKTDKRIFTFICKDSESNKHLCYVFDSEK--CAEEITLTIGQAFDLAYRKFLE----
110 120 130 140 150
180 190 200 210 220 230
pF1KA0 NADGQEDGESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVT
.: .: :... :..: .. .. . . .:. .: :: . .:
XP_016 --SGGKDVETRK----------QIAGLQK----RIQDLETENMELKNKVQD-LENQLRIT
160 170 180 190
240 250 260 270 280 290
pF1KA0 DLDAVGKEGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPGLGTETPLSTHHQMQLLQQ
...: .:: : .. : :. :: . .:: : ::. :
XP_016 QVSA--PPAGSMTPKSPSTDIFDMIPFSP---ISHQSSMPTRNGTQPPPVPSRSTEIKRD
200 210 220 230 240 250
300 310 320
pF1KA0 LLQQQQQQTQVAVAQVLLSLLPTSQAPLSWA
XP_016 LFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLEGTVFCLDPLDSRC
260 270 280 290 300
>>NP_057399 (OMIM: 608165) PTB domain-containing engulfm (304 aa)
initn: 195 init1: 102 opt: 199 Z-score: 196.3 bits: 44.5 E(85289): 0.00034
Smith-Waterman score: 239; 26.4% identity (55.8% similar) in 269 aa overlap (20-281:14-240)
10 20 30 40 50
pF1KA0 MPSKTKYNLVDDGHDLRIPLHNEDAF-QHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIR
.:. .:. .: : ..::..:: .: .:.. . :.:...
NP_057 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLK
10 20 30 40 50
60 70 80 90 100 110
pF1KA0 YEFKAKNIKKK------KVSIMVSVDGVKVILKKKKKKKEWTWDESKMLVMQDPIYRIFY
. :..:::. :: ...:. :::.. : :. .. . ..:: .
NP_057 F---ARHIKKSEGQKIPKVELQISIYGVKILEPKTKEVQH-----------NCQLHRISF
60 70 80 90 100
120 130 140 150 160 170
pF1KA0 VSHDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQ
. :. : .::..: .:. :: : :: :.: : .:. :.::::.. .. :.
NP_057 CADDKTDKRIFTFICKDSESNKHLCYVFDSEK--CAEEITLTIGQAFDLAYRKFLE----
110 120 130 140 150
180 190 200 210 220 230
pF1KA0 NADGQEDGESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVT
.: .: :... :..: .. .. . . .:. .: :: . .:
NP_057 --SGGKDVETRK----------QIAGLQK----RIQDLETENMELKNKVQD-LENQLRIT
160 170 180 190
240 250 260 270 280 290
pF1KA0 DLDAVGKEGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPGLGTETPLSTHHQMQLLQQ
...: .:: : .. : :. :: . .:: : ::. :
NP_057 QVSA--PPAGSMTPKSPSTDIFDMIPFSP---ISHQSSMPTRNGTQPPPVPSRSTEIKRD
200 210 220 230 240 250
300 310 320
pF1KA0 LLQQQQQQTQVAVAQVLLSLLPTSQAPLSWA
NP_057 LFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLEGTVFCLDPLDSRC
260 270 280 290 300
>>XP_006712652 (OMIM: 608165) PREDICTED: PTB domain-cont (322 aa)
initn: 195 init1: 102 opt: 199 Z-score: 196.0 bits: 44.5 E(85289): 0.00036
Smith-Waterman score: 239; 26.4% identity (55.8% similar) in 269 aa overlap (20-281:14-240)
10 20 30 40 50
pF1KA0 MPSKTKYNLVDDGHDLRIPLHNEDAF-QHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIR
.:. .:. .: : ..::..:: .: .:.. . :.:...
XP_006 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLK
10 20 30 40 50
60 70 80 90 100 110
pF1KA0 YEFKAKNIKKK------KVSIMVSVDGVKVILKKKKKKKEWTWDESKMLVMQDPIYRIFY
. :..:::. :: ...:. :::.. : :. .. . ..:: .
XP_006 F---ARHIKKSEGQKIPKVELQISIYGVKILEPKTKEVQH-----------NCQLHRISF
60 70 80 90 100
120 130 140 150 160 170
pF1KA0 VSHDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQ
. :. : .::..: .:. :: : :: :.: : .:. :.::::.. .. :.
XP_006 CADDKTDKRIFTFICKDSESNKHLCYVFDSEK--CAEEITLTIGQAFDLAYRKFLE----
110 120 130 140 150
180 190 200 210 220 230
pF1KA0 NADGQEDGESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVT
.: .: :... :..: .. .. . . .:. .: :: . .:
XP_006 --SGGKDVETRK----------QIAGLQK----RIQDLETENMELKNKVQD-LENQLRIT
160 170 180 190
240 250 260 270 280 290
pF1KA0 DLDAVGKEGGSHTGSKVSHPQEPMLTASPRMLLPSSSSKPPGLGTETPLSTHHQMQLLQQ
...: .:: : .. : :. :: . .:: : ::. :
XP_006 QVSA--PPAGSMTPKSPSTDIFDMIPFSP---ISHQSSMPTRNGTQPPPVPSRSTEIKRD
200 210 220 230 240 250
300 310 320
pF1KA0 LLQQQQQQTQVAVAQVLLSLLPTSQAPLSWA
XP_006 LFGAEPFDPFNCGAADFPPDIQSKLDEMQVTILIDWPINDLFHFDMGQRECYVPKLWFPS
260 270 280 290 300 310
>>XP_016859792 (OMIM: 608165) PREDICTED: PTB domain-cont (366 aa)
initn: 164 init1: 102 opt: 199 Z-score: 195.1 bits: 44.5 E(85289): 0.0004
Smith-Waterman score: 226; 28.0% identity (62.8% similar) in 164 aa overlap (20-176:14-161)
10 20 30 40 50
pF1KA0 MPSKTKYNLVDDGHDLRIPLHNEDAF-QHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIR
.:. .:. .: : ..::..:: .: .:.. . :.:...
XP_016 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLK
10 20 30 40 50
60 70 80 90 100 110
pF1KA0 YEFKAKNIKKK------KVSIMVSVDGVKVILKKKKKKKEWTWDESKMLVMQDPIYRIFY
. :..:::. :: ...:. :::.. : :. .. . ..:: .
XP_016 F---ARHIKKSEGQKIPKVELQISIYGVKILEPKTKEVQH-----------NCQLHRISF
60 70 80 90 100
120 130 140 150 160 170
pF1KA0 VSHDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQ
. :. : .::..: .:. :: : :: :.: .. .:. :.::::.. .. :. .
XP_016 CADDKTDKRIFTFICKDSESNKHLCYVFDSEKCAE--EITLTIGQAFDLAYRKFLESGGK
110 120 130 140 150
180 190 200 210 220 230
pF1KA0 NADGQEDGESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVT
...
XP_016 DVETRKQIAGLQKRIQDLETENMELKNKVQDLENQLRITQVSAPPLLHNMSDHEQHVFQR
160 170 180 190 200 210
>>XP_016859793 (OMIM: 608165) PREDICTED: PTB domain-cont (366 aa)
initn: 164 init1: 102 opt: 199 Z-score: 195.1 bits: 44.5 E(85289): 0.0004
Smith-Waterman score: 226; 28.0% identity (62.8% similar) in 164 aa overlap (20-176:14-161)
10 20 30 40 50
pF1KA0 MPSKTKYNLVDDGHDLRIPLHNEDAF-QHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIR
.:. .:. .: : ..::..:: .: .:.. . :.:...
XP_016 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLK
10 20 30 40 50
60 70 80 90 100 110
pF1KA0 YEFKAKNIKKK------KVSIMVSVDGVKVILKKKKKKKEWTWDESKMLVMQDPIYRIFY
. :..:::. :: ...:. :::.. : :. .. . ..:: .
XP_016 F---ARHIKKSEGQKIPKVELQISIYGVKILEPKTKEVQH-----------NCQLHRISF
60 70 80 90 100
120 130 140 150 160 170
pF1KA0 VSHDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQ
. :. : .::..: .:. :: : :: :.: .. .:. :.::::.. .. :. .
XP_016 CADDKTDKRIFTFICKDSESNKHLCYVFDSEKCAE--EITLTIGQAFDLAYRKFLESGGK
110 120 130 140 150
180 190 200 210 220 230
pF1KA0 NADGQEDGESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVT
...
XP_016 DVETRKQIAGLQKRIQDLETENMELKNKVQDLENQLRITQVSAPPLLHNMSDHEQHVFQR
160 170 180 190 200 210
>>XP_016859794 (OMIM: 608165) PREDICTED: PTB domain-cont (366 aa)
initn: 164 init1: 102 opt: 199 Z-score: 195.1 bits: 44.5 E(85289): 0.0004
Smith-Waterman score: 226; 28.0% identity (62.8% similar) in 164 aa overlap (20-176:14-161)
10 20 30 40 50
pF1KA0 MPSKTKYNLVDDGHDLRIPLHNEDAF-QHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIR
.:. .:. .: : ..::..:: .: .:.. . :.:...
XP_016 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLK
10 20 30 40 50
60 70 80 90 100 110
pF1KA0 YEFKAKNIKKK------KVSIMVSVDGVKVILKKKKKKKEWTWDESKMLVMQDPIYRIFY
. :..:::. :: ...:. :::.. : :. .. . ..:: .
XP_016 F---ARHIKKSEGQKIPKVELQISIYGVKILEPKTKEVQH-----------NCQLHRISF
60 70 80 90 100
120 130 140 150 160 170
pF1KA0 VSHDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQ
. :. : .::..: .:. :: : :: :.: .. .:. :.::::.. .. :. .
XP_016 CADDKTDKRIFTFICKDSESNKHLCYVFDSEKCAE--EITLTIGQAFDLAYRKFLESGGK
110 120 130 140 150
180 190 200 210 220 230
pF1KA0 NADGQEDGESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVT
...
XP_016 DVETRKQIAGLQKRIQDLETENMELKNKVQDLENQLRITQVSAPPLLHNMSDHEQHVFQR
160 170 180 190 200 210
>>XP_011509631 (OMIM: 608165) PREDICTED: PTB domain-cont (376 aa)
initn: 164 init1: 102 opt: 199 Z-score: 194.9 bits: 44.5 E(85289): 0.00041
Smith-Waterman score: 226; 28.0% identity (62.8% similar) in 164 aa overlap (20-176:14-161)
10 20 30 40 50
pF1KA0 MPSKTKYNLVDDGHDLRIPLHNEDAF-QHGICFEAKYVGSLDVPRPNSRVEIVAAMRRIR
.:. .:. .: : ..::..:: .: .:.. . :.:...
XP_011 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLK
10 20 30 40 50
60 70 80 90 100 110
pF1KA0 YEFKAKNIKKK------KVSIMVSVDGVKVILKKKKKKKEWTWDESKMLVMQDPIYRIFY
. :..:::. :: ...:. :::.. : :. .. . ..:: .
XP_011 F---ARHIKKSEGQKIPKVELQISIYGVKILEPKTKEVQH-----------NCQLHRISF
60 70 80 90 100
120 130 140 150 160 170
pF1KA0 VSHDSQDLKIFSYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQ
. :. : .::..: .:. :: : :: :.: .. .:. :.::::.. .. :. .
XP_011 CADDKTDKRIFTFICKDSESNKHLCYVFDSEKCAE--EITLTIGQAFDLAYRKFLESGGK
110 120 130 140 150
180 190 200 210 220 230
pF1KA0 NADGQEDGESERNSNSSGDPGRQLTGAERASTATAEETDIDAVEVPLPGNDVLEFSRGVT
...
XP_011 DVETRKQIAGLQKRIQDLETENMELKNKVQDLENQLRITQVSAPPLLHNMSDHEQHVFQR
160 170 180 190 200 210
324 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:00:37 2016 done: Wed Nov 2 19:00:38 2016
Total Scan time: 6.740 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]