Result of FASTA (omim) for pF1KA0247
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0247, 303 aa
  1>>>pF1KA0247 303 - 303 aa - 303 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9170+/-0.0003; mu= 13.9957+/- 0.019
 mean_var=97.4025+/-18.633, 0's: 0 Z-trim(119.7): 50  B-trim: 30 in 1/52
 Lambda= 0.129954
 statistics sampled from 33889 (33950) to 33889 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.398), width:  16
 Scan time:  5.990

The best scores are:                                      opt bits E(85289)
XP_011535714 (OMIM: 616761) PREDICTED: sushi domai ( 303) 2044 392.9 4.2e-109
NP_055549 (OMIM: 616761) sushi domain-containing p ( 303) 2044 392.9 4.2e-109
XP_016877328 (OMIM: 616761) PREDICTED: sushi domai ( 303) 2044 392.9 4.2e-109
XP_016877327 (OMIM: 616761) PREDICTED: sushi domai ( 303) 2044 392.9 4.2e-109
XP_011535715 (OMIM: 616761) PREDICTED: sushi domai ( 278) 1780 343.4 3.1e-94
XP_011507989 (OMIM: 615827) PREDICTED: sushi domai ( 332)  453 94.6 2.8e-19
XP_011507987 (OMIM: 615827) PREDICTED: sushi domai ( 492)  453 94.8 3.7e-19
XP_006711471 (OMIM: 615827) PREDICTED: sushi domai ( 492)  453 94.8 3.7e-19
XP_005273226 (OMIM: 615827) PREDICTED: sushi domai ( 492)  453 94.8 3.7e-19
XP_016857075 (OMIM: 615827) PREDICTED: sushi domai ( 549)  453 94.8 4.1e-19
XP_016857074 (OMIM: 615827) PREDICTED: sushi domai ( 549)  453 94.8 4.1e-19
XP_016857072 (OMIM: 615827) PREDICTED: sushi domai ( 564)  453 94.8 4.2e-19
XP_005273229 (OMIM: 615827) PREDICTED: sushi domai ( 330)  448 93.7 5.3e-19
XP_016857076 (OMIM: 615827) PREDICTED: sushi domai ( 490)  448 93.8 7.2e-19
XP_016857077 (OMIM: 615827) PREDICTED: sushi domai ( 490)  448 93.8 7.2e-19
NP_060452 (OMIM: 615827) sushi domain-containing p ( 490)  448 93.8 7.2e-19
XP_016857073 (OMIM: 615827) PREDICTED: sushi domai ( 562)  448 93.9 7.9e-19


>>XP_011535714 (OMIM: 616761) PREDICTED: sushi domain-co  (303 aa)
 initn: 2044 init1: 2044 opt: 2044  Z-score: 2079.8  bits: 392.9 E(85289): 4.2e-109
Smith-Waterman score: 2044; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303)

               10        20        30        40        50        60
pF1KA0 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
              250       260       270       280       290       300

          
pF1KA0 KEA
       :::
XP_011 KEA
          

>>NP_055549 (OMIM: 616761) sushi domain-containing prote  (303 aa)
 initn: 2044 init1: 2044 opt: 2044  Z-score: 2079.8  bits: 392.9 E(85289): 4.2e-109
Smith-Waterman score: 2044; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303)

               10        20        30        40        50        60
pF1KA0 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
              250       260       270       280       290       300

          
pF1KA0 KEA
       :::
NP_055 KEA
          

>>XP_016877328 (OMIM: 616761) PREDICTED: sushi domain-co  (303 aa)
 initn: 2044 init1: 2044 opt: 2044  Z-score: 2079.8  bits: 392.9 E(85289): 4.2e-109
Smith-Waterman score: 2044; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303)

               10        20        30        40        50        60
pF1KA0 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
              250       260       270       280       290       300

          
pF1KA0 KEA
       :::
XP_016 KEA
          

>>XP_016877327 (OMIM: 616761) PREDICTED: sushi domain-co  (303 aa)
 initn: 2044 init1: 2044 opt: 2044  Z-score: 2079.8  bits: 392.9 E(85289): 4.2e-109
Smith-Waterman score: 2044; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303)

               10        20        30        40        50        60
pF1KA0 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
              250       260       270       280       290       300

          
pF1KA0 KEA
       :::
XP_016 KEA
          

>>XP_011535715 (OMIM: 616761) PREDICTED: sushi domain-co  (278 aa)
 initn: 1780 init1: 1780 opt: 1780  Z-score: 1812.8  bits: 343.4 E(85289): 3.1e-94
Smith-Waterman score: 1780; 99.2% identity (100.0% similar) in 265 aa overlap (39-303:14-278)

       10        20        30        40        50        60        
pF1KA0 KSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPCRDPLTAGS
                                     ..::::::::::::::::::::::::::::
XP_011                  MEGFSEGEKSTLRSKVCPLPPEPENGGYICHPRPCRDPLTAGS
                                10        20        30        40   

       70        80        90       100       110       120        
pF1KA0 VIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLSIVASTASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLSIVASTASS
            50        60        70        80        90       100   

      130       140       150       160       170       180        
pF1KA0 VALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEAVYGSSGHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEAVYGSSGHC
           110       120       130       140       150       160   

      190       200       210       220       230       240        
pF1KA0 VPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCEAWGSRASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCEAWGSRASE
           170       180       190       200       210       220   

      250       260       270       280       290       300   
pF1KA0 TVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLLKEA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLLKEA
           230       240       250       260       270        

>>XP_011507989 (OMIM: 615827) PREDICTED: sushi domain-co  (332 aa)
 initn: 321 init1: 137 opt: 453  Z-score: 467.2  bits: 94.6 E(85289): 2.8e-19
Smith-Waterman score: 471; 35.4% identity (60.1% similar) in 268 aa overlap (39-302:82-330)

       10        20        30        40        50        60        
pF1KA0 KSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPCRDPLTAGS
                                     :.::::::   .: ..:::::: .  . :.
XP_011 PGFKLDGSAYLECLQNLIWSSSPPRCLALEAQVCPLPPMVSHGDFVCHPRPC-ERYNHGT
              60        70        80        90       100        110

       70        80        90       100         110       120      
pF1KA0 VIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDK--DTHTSLGVPTLSIVASTA
       :.:. :  :: : .::::.::. ::: :.... :  .:.   .:: .: . : .::: ::
XP_011 VVEFYCDPGYSLTSDYKYITCQYGEWFPSYQVYCIKSEQTWPSTHETL-LTTWKIVAFTA
              120       130       140       150        160         

        130       140       150        160       170       180     
pF1KA0 SSVALILLLVVLFVLLQPKLKSFHHSRRD-QGVSGDQVSIMVDGVQVALPSYEEAVYGSS
       .:: :.::::.:  ..: :.:.    :   .. :.:   ..:::: : ::::.::: :. 
XP_011 TSVLLVLLLVILARMFQTKFKAHFPPRGPPRSSSSDPDFVVVDGVPVMLPSYDEAVSGGL
     170       180       190       200       210       220         

         190       200        210       220       230       240    
pF1KA0 GHCVPPADPRVQIVLSEGSG-PSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCEAWGS
       .   :        . : :.: :    .: ..: :   :  ..:  : .::.:  :..  :
XP_011 SALGPG------YMASVGQGCP----LPVDDQSPP--AYPGSGDTDTGPGESETCDSV-S
     230             240           250         260       270       

          250       260       270       280       290       300    
pF1KA0 RASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLLKEA 
        .::  ....  .      : .    . .   :   .. :  .  . . .:.:::..:  
XP_011 GSSE--LLQSLYSPPRCQESTHPASDNPDIIASTAEEVAS--TSPGIDIADEIPLMEEDP
        280         290       300       310         320       330  

>>XP_011507987 (OMIM: 615827) PREDICTED: sushi domain-co  (492 aa)
 initn: 321 init1: 137 opt: 453  Z-score: 464.8  bits: 94.8 E(85289): 3.7e-19
Smith-Waterman score: 471; 35.4% identity (60.1% similar) in 268 aa overlap (39-302:242-490)

       10        20        30        40        50        60        
pF1KA0 KSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPCRDPLTAGS
                                     :.::::::   .: ..:::::: .  . :.
XP_011 PGFKLDGSAYLECLQNLIWSSSPPRCLALEAQVCPLPPMVSHGDFVCHPRPC-ERYNHGT
             220       230       240       250       260        270

       70        80        90       100         110       120      
pF1KA0 VIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDK--DTHTSLGVPTLSIVASTA
       :.:. :  :: : .::::.::. ::: :.... :  .:.   .:: .: . : .::: ::
XP_011 VVEFYCDPGYSLTSDYKYITCQYGEWFPSYQVYCIKSEQTWPSTHETL-LTTWKIVAFTA
              280       290       300       310        320         

        130       140       150        160       170       180     
pF1KA0 SSVALILLLVVLFVLLQPKLKSFHHSRRD-QGVSGDQVSIMVDGVQVALPSYEEAVYGSS
       .:: :.::::.:  ..: :.:.    :   .. :.:   ..:::: : ::::.::: :. 
XP_011 TSVLLVLLLVILARMFQTKFKAHFPPRGPPRSSSSDPDFVVVDGVPVMLPSYDEAVSGGL
     330       340       350       360       370       380         

         190       200        210       220       230       240    
pF1KA0 GHCVPPADPRVQIVLSEGSG-PSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCEAWGS
       .   :        . : :.: :    .: ..: :   :  ..:  : .::.:  :..  :
XP_011 SALGPG------YMASVGQGCP----LPVDDQSPP--AYPGSGDTDTGPGESETCDSV-S
     390             400           410         420       430       

          250       260       270       280       290       300    
pF1KA0 RASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLLKEA 
        .::  ....  .      : .    . .   :   .. :  .  . . .:.:::..:  
XP_011 GSSE--LLQSLYSPPRCQESTHPASDNPDIIASTAEEVAS--TSPGIDIADEIPLMEEDP
        440         450       460       470         480       490  

>>XP_006711471 (OMIM: 615827) PREDICTED: sushi domain-co  (492 aa)
 initn: 321 init1: 137 opt: 453  Z-score: 464.8  bits: 94.8 E(85289): 3.7e-19
Smith-Waterman score: 471; 35.4% identity (60.1% similar) in 268 aa overlap (39-302:242-490)

       10        20        30        40        50        60        
pF1KA0 KSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPCRDPLTAGS
                                     :.::::::   .: ..:::::: .  . :.
XP_006 PGFKLDGSAYLECLQNLIWSSSPPRCLALEAQVCPLPPMVSHGDFVCHPRPC-ERYNHGT
             220       230       240       250       260        270

       70        80        90       100         110       120      
pF1KA0 VIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDK--DTHTSLGVPTLSIVASTA
       :.:. :  :: : .::::.::. ::: :.... :  .:.   .:: .: . : .::: ::
XP_006 VVEFYCDPGYSLTSDYKYITCQYGEWFPSYQVYCIKSEQTWPSTHETL-LTTWKIVAFTA
              280       290       300       310        320         

        130       140       150        160       170       180     
pF1KA0 SSVALILLLVVLFVLLQPKLKSFHHSRRD-QGVSGDQVSIMVDGVQVALPSYEEAVYGSS
       .:: :.::::.:  ..: :.:.    :   .. :.:   ..:::: : ::::.::: :. 
XP_006 TSVLLVLLLVILARMFQTKFKAHFPPRGPPRSSSSDPDFVVVDGVPVMLPSYDEAVSGGL
     330       340       350       360       370       380         

         190       200        210       220       230       240    
pF1KA0 GHCVPPADPRVQIVLSEGSG-PSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCEAWGS
       .   :        . : :.: :    .: ..: :   :  ..:  : .::.:  :..  :
XP_006 SALGPG------YMASVGQGCP----LPVDDQSPP--AYPGSGDTDTGPGESETCDSV-S
     390             400           410         420       430       

          250       260       270       280       290       300    
pF1KA0 RASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLLKEA 
        .::  ....  .      : .    . .   :   .. :  .  . . .:.:::..:  
XP_006 GSSE--LLQSLYSPPRCQESTHPASDNPDIIASTAEEVAS--TSPGIDIADEIPLMEEDP
        440         450       460       470         480       490  

>>XP_005273226 (OMIM: 615827) PREDICTED: sushi domain-co  (492 aa)
 initn: 321 init1: 137 opt: 453  Z-score: 464.8  bits: 94.8 E(85289): 3.7e-19
Smith-Waterman score: 471; 35.4% identity (60.1% similar) in 268 aa overlap (39-302:242-490)

       10        20        30        40        50        60        
pF1KA0 KSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPCRDPLTAGS
                                     :.::::::   .: ..:::::: .  . :.
XP_005 PGFKLDGSAYLECLQNLIWSSSPPRCLALEAQVCPLPPMVSHGDFVCHPRPC-ERYNHGT
             220       230       240       250       260        270

       70        80        90       100         110       120      
pF1KA0 VIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDK--DTHTSLGVPTLSIVASTA
       :.:. :  :: : .::::.::. ::: :.... :  .:.   .:: .: . : .::: ::
XP_005 VVEFYCDPGYSLTSDYKYITCQYGEWFPSYQVYCIKSEQTWPSTHETL-LTTWKIVAFTA
              280       290       300       310        320         

        130       140       150        160       170       180     
pF1KA0 SSVALILLLVVLFVLLQPKLKSFHHSRRD-QGVSGDQVSIMVDGVQVALPSYEEAVYGSS
       .:: :.::::.:  ..: :.:.    :   .. :.:   ..:::: : ::::.::: :. 
XP_005 TSVLLVLLLVILARMFQTKFKAHFPPRGPPRSSSSDPDFVVVDGVPVMLPSYDEAVSGGL
     330       340       350       360       370       380         

         190       200        210       220       230       240    
pF1KA0 GHCVPPADPRVQIVLSEGSG-PSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCEAWGS
       .   :        . : :.: :    .: ..: :   :  ..:  : .::.:  :..  :
XP_005 SALGPG------YMASVGQGCP----LPVDDQSPP--AYPGSGDTDTGPGESETCDSV-S
     390             400           410         420       430       

          250       260       270       280       290       300    
pF1KA0 RASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLLKEA 
        .::  ....  .      : .    . .   :   .. :  .  . . .:.:::..:  
XP_005 GSSE--LLQSLYSPPRCQESTHPASDNPDIIASTAEEVAS--TSPGIDIADEIPLMEEDP
        440         450       460       470         480       490  

>>XP_016857075 (OMIM: 615827) PREDICTED: sushi domain-co  (549 aa)
 initn: 321 init1: 137 opt: 453  Z-score: 464.2  bits: 94.8 E(85289): 4.1e-19
Smith-Waterman score: 471; 35.4% identity (60.1% similar) in 268 aa overlap (39-302:299-547)

       10        20        30        40        50        60        
pF1KA0 KSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPCRDPLTAGS
                                     :.::::::   .: ..:::::: .  . :.
XP_016 PGFKLDGSAYLECLQNLIWSSSPPRCLALEAQVCPLPPMVSHGDFVCHPRPC-ERYNHGT
      270       280       290       300       310       320        

       70        80        90       100         110       120      
pF1KA0 VIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDK--DTHTSLGVPTLSIVASTA
       :.:. :  :: : .::::.::. ::: :.... :  .:.   .:: .: . : .::: ::
XP_016 VVEFYCDPGYSLTSDYKYITCQYGEWFPSYQVYCIKSEQTWPSTHETL-LTTWKIVAFTA
       330       340       350       360       370        380      

        130       140       150        160       170       180     
pF1KA0 SSVALILLLVVLFVLLQPKLKSFHHSRRD-QGVSGDQVSIMVDGVQVALPSYEEAVYGSS
       .:: :.::::.:  ..: :.:.    :   .. :.:   ..:::: : ::::.::: :. 
XP_016 TSVLLVLLLVILARMFQTKFKAHFPPRGPPRSSSSDPDFVVVDGVPVMLPSYDEAVSGGL
        390       400       410       420       430       440      

         190       200        210       220       230       240    
pF1KA0 GHCVPPADPRVQIVLSEGSG-PSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCEAWGS
       .   :        . : :.: :    .: ..: :   :  ..:  : .::.:  :..  :
XP_016 SALGPG------YMASVGQGCP----LPVDDQSPP--AYPGSGDTDTGPGESETCDSV-S
        450             460           470         480       490    

          250       260       270       280       290       300    
pF1KA0 RASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLLKEA 
        .::  ....  .      : .    . .   :   .. :  .  . . .:.:::..:  
XP_016 GSSE--LLQSLYSPPRCQESTHPASDNPDIIASTAEEVAS--TSPGIDIADEIPLMEEDP
             500       510       520       530         540         




303 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:26:37 2016 done: Wed Nov  2 18:26:38 2016
 Total Scan time:  5.990 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com