hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/smart.HMMs.bin Sequence file: /tmp/20080304/iprscan-20080304-22003268/chunk_1/iprscan-20080304-22003268.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KA0234 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00558 224.7 8e-63 1 SM00249 105.5 6.1e-27 2 SM00545 94.9 9.7e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00545 1/1 13 54 .. 1 45 [] 94.9 9.7e-24 SM00249 1/2 259 305 .. 1 39 [] 62.2 6.6e-14 SM00558 1/1 401 567 .. 1 214 [] 224.7 8e-63 SM00249 2/2 1117 1178 .. 1 39 [] 43.3 3.2e-08 Alignments of top-scoring domains: SM00545: domain 1 of 1, from 13 to 54: score 94.9, E = 9.7e-24 *->eiPvfyPteeEFkDplaYIskIrpqgGeAekyGIvKvVPPknWkP<- e+Pvf+P+++EF+Dpl+YI+kIrp +Aek+GI+K+ PP++W+P pF1KA0234 13 ECPVFEPSWAEFQDPLGYIAKIRP---IAEKSGICKIRPPADWQP 54 * pF1KA0234 - - SM00249: domain 1 of 2, from 259 to 305: score 62.2, E = 6.6e-14 *->yC.vCgk....g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprC +C+vC +++++++ll+Cd gCd+ yH+ Cl ppl+++p+g w+Cp+C pF1KA0234 259 ICqVCSRgdedDkLLFCD-GCDDNYHIfCLLPPLPeIPRGiWRCPKC 304 k<-* pF1KA0234 305 I 305 SM00558: domain 1 of 1, from 401 to 567: score 224.7, E = 8e-63 *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv +y++ wnl+ +P ++ +++l +++ di+g+ v pF1KA0234 401 EYATSGWNLNVMP----------VLDQSVLCHIN-----ADISGMKV 432 gkPkpkpylymGmaEsrgstTpwHiDdydlySvNylhqgagedGKrWyli p+ly+Gm +s ++wHi+d+++yS+Nylh+g++ K+Wy++ pF1KA0234 433 ------PWLYVGMV---FSAFCWHIEDHWSYSINYLHWGEP---KTWYGV 470 Ppedaeklekllkkhgkefhistapdlfkeqpdllihlstwispevlkkr P ae le+++k++ p+lf +qpdll++l+t+++p l + pF1KA0234 471 PSLAAEHLEEVMKML--------TPELFDSQPDLLHQLVTLMNPNTLMSH 512 lkeeperPlfqgvpvyrfvQkpGefvfiPpGwyHaVfnlGkfniavavNF + vpv r++Q++Gefv+++p++yH++fn G +n+a+avNF pF1KA0234 513 G-----------VPVVRTNQCAGEFVITFPRAYHSGFNQG-YNFAEAVNF 550 aspewlpmglrlveelr<-* ++ +wlp g +++e++r pF1KA0234 551 CTADWLPAGRQCIEHYR 567 SM00249: domain 2 of 2, from 1117 to 1178: score 43.3, E = 3.2e-08 *->yCvCgk....g.llqCdkgCdrwyHv.Clgpple............. +CvCg+ + + + lqCd C++w+H +C++ p + ++++++ ++++ pF1KA0234 1117 ICVCGQvpagVgVLQCD-LCQDWFHGqCVSVPHLltspkpsltsspl 1162 ....epdg.wyCprCk<-* e d +++Cp C pF1KA0234 1163 lawwEWDTkFLCPLCM 1178 //