Result of FASTA (omim) for pF1KA0159
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0159, 1401 aa
  1>>>pF1KA0159 1401 - 1401 aa - 1401 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0538+/-0.000434; mu= 20.2123+/- 0.027
 mean_var=96.5887+/-18.834, 0's: 0 Z-trim(111.3): 26  B-trim: 28 in 1/53
 Lambda= 0.130500
 statistics sampled from 19847 (19859) to 19847 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.572), E-opt: 0.2 (0.233), width:  16
 Scan time: 13.400

The best scores are:                                      opt bits E(85289)
NP_055680 (OMIM: 615638) condensin complex subunit (1401) 9101 1725.2       0
XP_011541021 (OMIM: 609276) PREDICTED: condensin-2 (1360)  209 51.1 6.7e-05
NP_056076 (OMIM: 609276) condensin-2 complex subun (1498)  209 51.1 7.2e-05


>>NP_055680 (OMIM: 615638) condensin complex subunit 1 [  (1401 aa)
 initn: 9101 init1: 9101 opt: 9101  Z-score: 9256.5  bits: 1725.2 E(85289):    0
Smith-Waterman score: 9101; 99.8% identity (99.9% similar) in 1401 aa overlap (1-1401:1-1401)

               10        20        30        40        50        60
pF1KA0 MAPQMYEFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAPQMYEFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 DTIYSILHHFRSIDPGLKEDTLEFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMN
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
NP_055 DTIYSILHHFRSIDPGLKEDTLQFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 CYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 IRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 TVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 AAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLEAAARD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLEAAARD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 TRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 CKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQKLQEMRAQRRTAAASAVLDPEEEWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQKLQEMRAQRRTAAASAVLDPEEEWE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 AMLPELKSTLQQLLQLPQGEEEIPEQIANTETTEDVKGRIYQLLAKASYKKAIILTREAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AMLPELKSTLQQLLQLPQGEEEIPEQIANTETTEDVKGRIYQLLAKASYKKAIILTREAT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 GHFQESEPFSHIDPEESEETRLLNILGLIFKGPAASTQEKNPRESTGNMVTGQTVCKNKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GHFQESEPFSHIDPEESEETRLLNILGLIFKGPAASTQEKNPRESTGNMVTGQTVCKNKP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 NMSDPEESRGNDELVKQEMLVQYLQDAYSFSRKITEAIGIISKMMYENTTTVVQEVIEFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NMSDPEESRGNDELVKQEMLVQYLQDAYSFSRKITEAIGIISKMMYENTTTVVQEVIEFF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 VMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQLYLNPKGDSARAKAQALIQNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQLYLNPKGDSARAKAQALIQNL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 SLLLVDASVGTIQCLEEILCEFVQKDELKPAVTQLLWERATEKVACCPLERCSSVMLLGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SLLLVDASVGTIQCLEEILCEFVQKDELKPAVTQLLWERATEKVACCPLERCSSVMLLGM
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 MARGKPEIVGSNLDTLVSIGLDEKFPQDYRLAQQVCHAIANISDRRKPSLGKRHPPFRLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MARGKPEIVGSNLDTLVSIGLDEKFPQDYRLAQQVCHAIANISDRRKPSLGKRHPPFRLP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 QEHRLFERLRETVTKGFVHPDPLWIPFKEVAVTLIYQLAEGPEVICAQILQGCAKQALEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QEHRLFERLRETVTKGFVHPDPLWIPFKEVAVTLIYQLAEGPEVICAQILQGCAKQALEK
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 LEEKRTSQEDPKESPAMLPTFLLMNLLSLAGDVALQQLVHLEQAVSGELCRRRVLREEQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LEEKRTSQEDPKESPAMLPTFLLMNLLSLAGDVALQQLVHLEQAVSGELCRRRVLREEQE
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 HKTKDPKEKNTSSETTMEEELGLVGATADDTEAELIRGICEMELLDGKQTLAAFVPLLLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 HKTKDPKEKNTSSETTMEEELGLVGATADDTEAELIRGICEMELLDGKQTLAAFVPLLLK
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 VCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTILEKSPLPIVRSNLMVATG
       :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
NP_055 VCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTMLEKSPLPIVRSNLMVATG
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA0 DLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLID
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA0 PEPQIAALAKNFFNELSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PEPQIAALAKNFFNELSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKD
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA0 KQTESLVEKLCQRFRTSLTERQQRDLAYCVSQLPLTERGLRKMLDNFDCFGDKLSDESIF
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
NP_055 KQTESLVEKLCQRFRTSRTERQQRDLAYCVSQLPLTERGLRKMLDNFDCFGDKLSDESIF
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA0 SAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRGLDGIKELEIGQAGSQRAPSAKKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRGLDGIKELEIGQAGSQRAPSAKKPS
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KA0 TGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEEDLSAEMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEEDLSAEMT
             1330      1340      1350      1360      1370      1380

             1390      1400 
pF1KA0 EDETPKKTTPILRASARRHRS
       :::::::::::::::::::::
NP_055 EDETPKKTTPILRASARRHRS
             1390      1400 

>>XP_011541021 (OMIM: 609276) PREDICTED: condensin-2 com  (1360 aa)
 initn: 230 init1: 155 opt: 209  Z-score: 209.0  bits: 51.1 E(85289): 6.7e-05
Smith-Waterman score: 209; 22.8% identity (57.4% similar) in 263 aa overlap (1033-1289:781-1038)

           1010      1020      1030      1040      1050      1060  
pF1KA0 ELLDGKQTLAAFVPLLLKVCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTI
                                     . : : ..:::.:.    .  ...  :   
XP_011 ADHSPSSQGSSEAPASQPPPQVRGSVMPSVIRAHAIITLGKLCLQHEDLAKKSIPALVRE
              760       770       780       790       800       810

           1070      1080      1090      1100      1110      1120  
pF1KA0 LEKSPLPIVRSNLMVATGDLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILK
       ::      ::.:....  :: ::.  .:: . :..   :.:    .:: . ...:.:. .
XP_011 LEVCEDVAVRNNVIIVMCDLCIRYTIMVDKYIPNISMCLKDSDPFIRKQTLILLTNLLQE
              820       830       840       850       860       870

           1130       1140      1150      1160        1170         
pF1KA0 DMVKVKGQVS-EMAVLLIDPEPQIAALAKNFFNELSHKGNAI--YNLLPDIISRLSDPEL
       ..:: ::..  ...  ::: .:.::....  . .:  : : .  .. . . : .... : 
XP_011 EFVKWKGSLFFRFVSTLIDSHPDIASFGEFCLAHLLLKRNPVMFFQHFIECIFHFNNYEK
              880       890       900       910       920       930

    1180      1190      1200      1210      1220        1230       
pF1KA0 GVEEEPFHTIMKQLLSYITKDKQTESLVEKLCQRFRTSLTERQQRDLA--YCVSQLPLTE
         . . :    ..   .  : :...    :. . .   .:..:. ...   :.: :    
XP_011 HEKYNKFPQSEREKRLFSLKGKSNKERRMKIYKFLLEHFTDEQRFNITSKICLSILACFA
              940       950       960       970       980       990

      1240       1250      1260      1270      1280      1290      
pF1KA0 RGLRKM-LDNFDCFGDKLSDESIFSAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRG
        :.  . ::  . ..: .  : . :  ..... .:  .::.   ...: .. :       
XP_011 DGILPLDLDASELLSDTF--EVLSSKEIKLLA-MR--SKPDKDLLMEEDDMALANVVMQE
             1000        1010      1020         1030      1040     

       1300      1310      1320      1330      1340      1350      
pF1KA0 LDGIKELEIGQAGSQRAPSAKKPSTGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRA
                                                                   
XP_011 AQKKLISQVQKRNFIENIIPIIISLKTVLEKNKIPALRELMHYLREVMQDYRDELKDFFA
        1050      1060      1070      1080      1090      1100     

>>NP_056076 (OMIM: 609276) condensin-2 complex subunit D  (1498 aa)
 initn: 230 init1: 155 opt: 209  Z-score: 208.4  bits: 51.1 E(85289): 7.2e-05
Smith-Waterman score: 209; 22.8% identity (57.4% similar) in 263 aa overlap (1033-1289:919-1176)

           1010      1020      1030      1040      1050      1060  
pF1KA0 ELLDGKQTLAAFVPLLLKVCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTI
                                     . : : ..:::.:.    .  ...  :   
NP_056 ADHSPSSQGSSEAPASQPPPQVRGSVMPSVIRAHAIITLGKLCLQHEDLAKKSIPALVRE
      890       900       910       920       930       940        

           1070      1080      1090      1100      1110      1120  
pF1KA0 LEKSPLPIVRSNLMVATGDLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILK
       ::      ::.:....  :: ::.  .:: . :..   :.:    .:: . ...:.:. .
NP_056 LEVCEDVAVRNNVIIVMCDLCIRYTIMVDKYIPNISMCLKDSDPFIRKQTLILLTNLLQE
      950       960       970       980       990      1000        

           1130       1140      1150      1160        1170         
pF1KA0 DMVKVKGQVS-EMAVLLIDPEPQIAALAKNFFNELSHKGNAI--YNLLPDIISRLSDPEL
       ..:: ::..  ...  ::: .:.::....  . .:  : : .  .. . . : .... : 
NP_056 EFVKWKGSLFFRFVSTLIDSHPDIASFGEFCLAHLLLKRNPVMFFQHFIECIFHFNNYEK
     1010      1020      1030      1040      1050      1060        

    1180      1190      1200      1210      1220        1230       
pF1KA0 GVEEEPFHTIMKQLLSYITKDKQTESLVEKLCQRFRTSLTERQQRDLA--YCVSQLPLTE
         . . :    ..   .  : :...    :. . .   .:..:. ...   :.: :    
NP_056 HEKYNKFPQSEREKRLFSLKGKSNKERRMKIYKFLLEHFTDEQRFNITSKICLSILACFA
     1070      1080      1090      1100      1110      1120        

      1240       1250      1260      1270      1280      1290      
pF1KA0 RGLRKM-LDNFDCFGDKLSDESIFSAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRG
        :.  . ::  . ..: .  : . :  ..... .:  .::.   ...: .. :       
NP_056 DGILPLDLDASELLSDTF--EVLSSKEIKLLA-MR--SKPDKDLLMEEDDMALANVVMQE
     1130      1140        1150       1160        1170      1180   

       1300      1310      1320      1330      1340      1350      
pF1KA0 LDGIKELEIGQAGSQRAPSAKKPSTGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRA
                                                                   
NP_056 AQKKLISQVQKRNFIENIIPIIISLKTVLEKNKIPALRELMHYLREVMQDYRDELKDFFA
          1190      1200      1210      1220      1230      1240   




1401 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:18:41 2016 done: Wed Nov  2 18:18:42 2016
 Total Scan time: 13.400 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]
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