Result of FASTA (ccds) for pF1KA0159
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0159, 1401 aa
  1>>>pF1KA0159 1401 - 1401 aa - 1401 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6757+/-0.00107; mu= 16.2383+/- 0.064
 mean_var=88.5474+/-17.022, 0's: 0 Z-trim(104.1): 21  B-trim: 9 in 1/51
 Lambda= 0.136297
 statistics sampled from 7729 (7731) to 7729 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.584), E-opt: 0.2 (0.237), width:  16
 Scan time:  4.710

The best scores are:                                      opt bits E(32554)
CCDS8548.1 NCAPD2 gene_id:9918|Hs108|chr12         (1401) 9101 1800.7       0


>>CCDS8548.1 NCAPD2 gene_id:9918|Hs108|chr12              (1401 aa)
 initn: 9101 init1: 9101 opt: 9101  Z-score: 9664.2  bits: 1800.7 E(32554):    0
Smith-Waterman score: 9101; 99.8% identity (99.9% similar) in 1401 aa overlap (1-1401:1-1401)

               10        20        30        40        50        60
pF1KA0 MAPQMYEFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MAPQMYEFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 DTIYSILHHFRSIDPGLKEDTLEFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMN
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS85 DTIYSILHHFRSIDPGLKEDTLQFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 CYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 CYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 IRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 IRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 TVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 TVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 AAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLEAAARD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 AAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLEAAARD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 TRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 TRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 CKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQKLQEMRAQRRTAAASAVLDPEEEWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 CKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQKLQEMRAQRRTAAASAVLDPEEEWE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 AMLPELKSTLQQLLQLPQGEEEIPEQIANTETTEDVKGRIYQLLAKASYKKAIILTREAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 AMLPELKSTLQQLLQLPQGEEEIPEQIANTETTEDVKGRIYQLLAKASYKKAIILTREAT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 GHFQESEPFSHIDPEESEETRLLNILGLIFKGPAASTQEKNPRESTGNMVTGQTVCKNKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 GHFQESEPFSHIDPEESEETRLLNILGLIFKGPAASTQEKNPRESTGNMVTGQTVCKNKP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 NMSDPEESRGNDELVKQEMLVQYLQDAYSFSRKITEAIGIISKMMYENTTTVVQEVIEFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 NMSDPEESRGNDELVKQEMLVQYLQDAYSFSRKITEAIGIISKMMYENTTTVVQEVIEFF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 VMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQLYLNPKGDSARAKAQALIQNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 VMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQLYLNPKGDSARAKAQALIQNL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 SLLLVDASVGTIQCLEEILCEFVQKDELKPAVTQLLWERATEKVACCPLERCSSVMLLGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 SLLLVDASVGTIQCLEEILCEFVQKDELKPAVTQLLWERATEKVACCPLERCSSVMLLGM
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 MARGKPEIVGSNLDTLVSIGLDEKFPQDYRLAQQVCHAIANISDRRKPSLGKRHPPFRLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MARGKPEIVGSNLDTLVSIGLDEKFPQDYRLAQQVCHAIANISDRRKPSLGKRHPPFRLP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 QEHRLFERLRETVTKGFVHPDPLWIPFKEVAVTLIYQLAEGPEVICAQILQGCAKQALEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 QEHRLFERLRETVTKGFVHPDPLWIPFKEVAVTLIYQLAEGPEVICAQILQGCAKQALEK
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 LEEKRTSQEDPKESPAMLPTFLLMNLLSLAGDVALQQLVHLEQAVSGELCRRRVLREEQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 LEEKRTSQEDPKESPAMLPTFLLMNLLSLAGDVALQQLVHLEQAVSGELCRRRVLREEQE
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 HKTKDPKEKNTSSETTMEEELGLVGATADDTEAELIRGICEMELLDGKQTLAAFVPLLLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 HKTKDPKEKNTSSETTMEEELGLVGATADDTEAELIRGICEMELLDGKQTLAAFVPLLLK
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 VCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTILEKSPLPIVRSNLMVATG
       :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
CCDS85 VCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTMLEKSPLPIVRSNLMVATG
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA0 DLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 DLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLID
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA0 PEPQIAALAKNFFNELSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 PEPQIAALAKNFFNELSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKD
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA0 KQTESLVEKLCQRFRTSLTERQQRDLAYCVSQLPLTERGLRKMLDNFDCFGDKLSDESIF
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS85 KQTESLVEKLCQRFRTSRTERQQRDLAYCVSQLPLTERGLRKMLDNFDCFGDKLSDESIF
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA0 SAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRGLDGIKELEIGQAGSQRAPSAKKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 SAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRGLDGIKELEIGQAGSQRAPSAKKPS
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KA0 TGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEEDLSAEMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 TGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEEDLSAEMT
             1330      1340      1350      1360      1370      1380

             1390      1400 
pF1KA0 EDETPKKTTPILRASARRHRS
       :::::::::::::::::::::
CCDS85 EDETPKKTTPILRASARRHRS
             1390      1400 




1401 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:18:40 2016 done: Wed Nov  2 18:18:40 2016
 Total Scan time:  4.710 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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