Result of FASTA (omim) for pF1KA0082
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0082, 835 aa
  1>>>pF1KA0082 835 - 835 aa - 835 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9146+/-0.000443; mu= 17.5142+/- 0.028
 mean_var=74.4571+/-14.537, 0's: 0 Z-trim(110.3): 62  B-trim: 225 in 1/49
 Lambda= 0.148635
 statistics sampled from 18519 (18576) to 18519 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.577), E-opt: 0.2 (0.218), width:  16
 Scan time:  8.190

The best scores are:                                      opt bits E(85289)
NP_055865 (OMIM: 616189) cap-specific mRNA (nucleo ( 835) 5619 1215.1       0
XP_005249012 (OMIM: 616189) PREDICTED: cap-specifi ( 803) 5306 1147.9       0
XP_016878933 (OMIM: 616190) PREDICTED: cap-specifi ( 770)  320 78.8 1.1e-13
NP_001311303 (OMIM: 616190) cap-specific mRNA (nuc ( 770)  320 78.8 1.1e-13
XP_011521531 (OMIM: 616190) PREDICTED: cap-specifi ( 770)  320 78.8 1.1e-13
NP_001311306 (OMIM: 616190) cap-specific mRNA (nuc ( 770)  320 78.8 1.1e-13
XP_011521530 (OMIM: 616190) PREDICTED: cap-specifi ( 770)  320 78.8 1.1e-13
NP_001311308 (OMIM: 616190) cap-specific mRNA (nuc ( 770)  320 78.8 1.1e-13
NP_060818 (OMIM: 616190) cap-specific mRNA (nucleo ( 770)  320 78.8 1.1e-13
NP_001311307 (OMIM: 616190) cap-specific mRNA (nuc ( 770)  320 78.8 1.1e-13
NP_001093112 (OMIM: 616190) cap-specific mRNA (nuc ( 770)  320 78.8 1.1e-13
XP_005272652 (OMIM: 300499,309549) PREDICTED: puta ( 327)  174 47.3 0.00013
NP_803188 (OMIM: 300499,309549) putative tRNA (cyt ( 327)  174 47.3 0.00013
XP_011542197 (OMIM: 300499,309549) PREDICTED: puta ( 335)  174 47.3 0.00014
XP_016884871 (OMIM: 300499,309549) PREDICTED: puta ( 335)  174 47.3 0.00014
NP_036412 (OMIM: 300499,309549) putative tRNA (cyt ( 329)  165 45.4 0.00051
XP_011542196 (OMIM: 300499,309549) PREDICTED: puta ( 337)  165 45.4 0.00052
XP_011542195 (OMIM: 300499,309549) PREDICTED: puta ( 337)  165 45.4 0.00052


>>NP_055865 (OMIM: 616189) cap-specific mRNA (nucleoside  (835 aa)
 initn: 5619 init1: 5619 opt: 5619  Z-score: 6507.3  bits: 1215.1 E(85289):    0
Smith-Waterman score: 5619; 100.0% identity (100.0% similar) in 835 aa overlap (1-835:1-835)

               10        20        30        40        50        60
pF1KA0 MKRRTDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MKRRTDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 QHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 SQKGRRGLGLTLRGFDQELNVDWRDEPEPSACEQVSWFPECTTEIPDTQEMSDWMVVGKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SQKGRRGLGLTLRGFDQELNVDWRDEPEPSACEQVSWFPECTTEIPDTQEMSDWMVVGKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 KMIIEDETEFCGEELLHSVLQCKSVFDVLDGEEMRRARTRANPYEMIRGVFFLNRAAMKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KMIIEDETEFCGEELLHSVLQCKSVFDVLDGEEMRRARTRANPYEMIRGVFFLNRAAMKM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 ANMDFVFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGFSEYVLWRKKWHAKGFGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ANMDFVFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGFSEYVLWRKKWHAKGFGM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 TLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDRKGVHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDRKGVHF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 LMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYLL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 YCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 VPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKECLRLWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKECLRLWG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 IPDQARVAPSSSDPKSKFFELIQGTEIDIFSYKPTLLTSKTLEKIRPVFDYRCMVSGSEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IPDQARVAPSSSDPKSKFFELIQGTEIDIFSYKPTLLTSKTLEKIRPVFDYRCMVSGSEQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 KFLIGLGKSQIYTWDGRQSDRWIKLDLKTELPRDTLLSVEIVHELKGEGKAQRKISAIHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KFLIGLGKSQIYTWDGRQSDRWIKLDLKTELPRDTLLSVEIVHELKGEGKAQRKISAIHI
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 LDVLVLNGTDVREQHFNQRIQLAEKFVKAVSKPSRPDMNPIRVKEVYRLEEMEKIFVRLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LDVLVLNGTDVREQHFNQRIQLAEKFVKAVSKPSRPDMNPIRVKEVYRLEEMEKIFVRLE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 MKIIKGSSGTPKLSYTGRDDRHFVPMGLYIVRTVNEPWTMGFSKSFKKKFFYNKKTKDST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MKIIKGSSGTPKLSYTGRDDRHFVPMGLYIVRTVNEPWTMGFSKSFKKKFFYNKKTKDST
              730       740       750       760       770       780

              790       800       810       820       830     
pF1KA0 FDLPADSIAPFHICYYGRLFWEWGDGIRVHDSQKPQDQDKLSKEDVLSFIQMHRA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FDLPADSIAPFHICYYGRLFWEWGDGIRVHDSQKPQDQDKLSKEDVLSFIQMHRA
              790       800       810       820       830     

>>XP_005249012 (OMIM: 616189) PREDICTED: cap-specific mR  (803 aa)
 initn: 5306 init1: 5306 opt: 5306  Z-score: 6144.9  bits: 1147.9 E(85289):    0
Smith-Waterman score: 5306; 99.9% identity (100.0% similar) in 793 aa overlap (1-793:1-793)

               10        20        30        40        50        60
pF1KA0 MKRRTDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKRRTDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 QHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 SQKGRRGLGLTLRGFDQELNVDWRDEPEPSACEQVSWFPECTTEIPDTQEMSDWMVVGKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SQKGRRGLGLTLRGFDQELNVDWRDEPEPSACEQVSWFPECTTEIPDTQEMSDWMVVGKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 KMIIEDETEFCGEELLHSVLQCKSVFDVLDGEEMRRARTRANPYEMIRGVFFLNRAAMKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KMIIEDETEFCGEELLHSVLQCKSVFDVLDGEEMRRARTRANPYEMIRGVFFLNRAAMKM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 ANMDFVFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGFSEYVLWRKKWHAKGFGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ANMDFVFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGFSEYVLWRKKWHAKGFGM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 TLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDRKGVHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDRKGVHF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 LMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYLL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 YCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 VPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKECLRLWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKECLRLWG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 IPDQARVAPSSSDPKSKFFELIQGTEIDIFSYKPTLLTSKTLEKIRPVFDYRCMVSGSEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IPDQARVAPSSSDPKSKFFELIQGTEIDIFSYKPTLLTSKTLEKIRPVFDYRCMVSGSEQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 KFLIGLGKSQIYTWDGRQSDRWIKLDLKTELPRDTLLSVEIVHELKGEGKAQRKISAIHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KFLIGLGKSQIYTWDGRQSDRWIKLDLKTELPRDTLLSVEIVHELKGEGKAQRKISAIHI
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 LDVLVLNGTDVREQHFNQRIQLAEKFVKAVSKPSRPDMNPIRVKEVYRLEEMEKIFVRLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LDVLVLNGTDVREQHFNQRIQLAEKFVKAVSKPSRPDMNPIRVKEVYRLEEMEKIFVRLE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 MKIIKGSSGTPKLSYTGRDDRHFVPMGLYIVRTVNEPWTMGFSKSFKKKFFYNKKTKDST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKIIKGSSGTPKLSYTGRDDRHFVPMGLYIVRTVNEPWTMGFSKSFKKKFFYNKKTKDST
              730       740       750       760       770       780

              790       800       810       820       830     
pF1KA0 FDLPADSIAPFHICYYGRLFWEWGDGIRVHDSQKPQDQDKLSKEDVLSFIQMHRA
       ::::::::::::.                                          
XP_005 FDLPADSIAPFHLPSLACLSKMD                                
              790       800                                   

>>XP_016878933 (OMIM: 616190) PREDICTED: cap-specific mR  (770 aa)
 initn: 312 init1: 284 opt: 320  Z-score: 366.9  bits: 78.8 E(85289): 1.1e-13
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)

         250       260       270       280           290           
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
                                     .: .::.:    ..:.  ..     .: :.
XP_016 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
            120       130       140       150       160       170  

        300       310        320       330       340       350     
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
        ..   .. .:. .  :    .. :   :.:    :. :::   . .....::.   .. 
XP_016 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
            180       190       200          210       220         

         360       370       380       390       400       410     
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
         ::.. :::.:. .:. . :: : ..:  :. . ::. . .:: :. : : .:   :..
XP_016 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
        230       240       250       260       270       280      

         420       430       440       450       460        470    
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
       :.::: :::..: .::: ::. .::: ::::   : : . ..  :  ...... ...   
XP_016 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
        290       300       310       320        330       340     

          480       490       500       510       520       530    
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
          . :.:   .:  ::                                           
XP_016 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
         350        360       370       380       390       400    

>>NP_001311303 (OMIM: 616190) cap-specific mRNA (nucleos  (770 aa)
 initn: 312 init1: 284 opt: 320  Z-score: 366.9  bits: 78.8 E(85289): 1.1e-13
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)

         250       260       270       280           290           
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
                                     .: .::.:    ..:.  ..     .: :.
NP_001 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
            120       130       140       150       160       170  

        300       310        320       330       340       350     
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
        ..   .. .:. .  :    .. :   :.:    :. :::   . .....::.   .. 
NP_001 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
            180       190       200          210       220         

         360       370       380       390       400       410     
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
         ::.. :::.:. .:. . :: : ..:  :. . ::. . .:: :. : : .:   :..
NP_001 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
        230       240       250       260       270       280      

         420       430       440       450       460        470    
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
       :.::: :::..: .::: ::. .::: ::::   : : . ..  :  ...... ...   
NP_001 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
        290       300       310       320        330       340     

          480       490       500       510       520       530    
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
          . :.:   .:  ::                                           
NP_001 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
         350        360       370       380       390       400    

>>XP_011521531 (OMIM: 616190) PREDICTED: cap-specific mR  (770 aa)
 initn: 312 init1: 284 opt: 320  Z-score: 366.9  bits: 78.8 E(85289): 1.1e-13
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)

         250       260       270       280           290           
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
                                     .: .::.:    ..:.  ..     .: :.
XP_011 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
            120       130       140       150       160       170  

        300       310        320       330       340       350     
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
        ..   .. .:. .  :    .. :   :.:    :. :::   . .....::.   .. 
XP_011 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
            180       190       200          210       220         

         360       370       380       390       400       410     
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
         ::.. :::.:. .:. . :: : ..:  :. . ::. . .:: :. : : .:   :..
XP_011 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
        230       240       250       260       270       280      

         420       430       440       450       460        470    
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
       :.::: :::..: .::: ::. .::: ::::   : : . ..  :  ...... ...   
XP_011 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
        290       300       310       320        330       340     

          480       490       500       510       520       530    
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
          . :.:   .:  ::                                           
XP_011 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
         350        360       370       380       390       400    

>>NP_001311306 (OMIM: 616190) cap-specific mRNA (nucleos  (770 aa)
 initn: 312 init1: 284 opt: 320  Z-score: 366.9  bits: 78.8 E(85289): 1.1e-13
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)

         250       260       270       280           290           
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
                                     .: .::.:    ..:.  ..     .: :.
NP_001 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
            120       130       140       150       160       170  

        300       310        320       330       340       350     
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
        ..   .. .:. .  :    .. :   :.:    :. :::   . .....::.   .. 
NP_001 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
            180       190       200          210       220         

         360       370       380       390       400       410     
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
         ::.. :::.:. .:. . :: : ..:  :. . ::. . .:: :. : : .:   :..
NP_001 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
        230       240       250       260       270       280      

         420       430       440       450       460        470    
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
       :.::: :::..: .::: ::. .::: ::::   : : . ..  :  ...... ...   
NP_001 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
        290       300       310       320        330       340     

          480       490       500       510       520       530    
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
          . :.:   .:  ::                                           
NP_001 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
         350        360       370       380       390       400    

>>XP_011521530 (OMIM: 616190) PREDICTED: cap-specific mR  (770 aa)
 initn: 312 init1: 284 opt: 320  Z-score: 366.9  bits: 78.8 E(85289): 1.1e-13
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)

         250       260       270       280           290           
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
                                     .: .::.:    ..:.  ..     .: :.
XP_011 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
            120       130       140       150       160       170  

        300       310        320       330       340       350     
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
        ..   .. .:. .  :    .. :   :.:    :. :::   . .....::.   .. 
XP_011 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
            180       190       200          210       220         

         360       370       380       390       400       410     
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
         ::.. :::.:. .:. . :: : ..:  :. . ::. . .:: :. : : .:   :..
XP_011 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
        230       240       250       260       270       280      

         420       430       440       450       460        470    
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
       :.::: :::..: .::: ::. .::: ::::   : : . ..  :  ...... ...   
XP_011 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
        290       300       310       320        330       340     

          480       490       500       510       520       530    
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
          . :.:   .:  ::                                           
XP_011 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
         350        360       370       380       390       400    

>>NP_001311308 (OMIM: 616190) cap-specific mRNA (nucleos  (770 aa)
 initn: 312 init1: 284 opt: 320  Z-score: 366.9  bits: 78.8 E(85289): 1.1e-13
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)

         250       260       270       280           290           
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
                                     .: .::.:    ..:.  ..     .: :.
NP_001 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
            120       130       140       150       160       170  

        300       310        320       330       340       350     
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
        ..   .. .:. .  :    .. :   :.:    :. :::   . .....::.   .. 
NP_001 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
            180       190       200          210       220         

         360       370       380       390       400       410     
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
         ::.. :::.:. .:. . :: : ..:  :. . ::. . .:: :. : : .:   :..
NP_001 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
        230       240       250       260       270       280      

         420       430       440       450       460        470    
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
       :.::: :::..: .::: ::. .::: ::::   : : . ..  :  ...... ...   
NP_001 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
        290       300       310       320        330       340     

          480       490       500       510       520       530    
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
          . :.:   .:  ::                                           
NP_001 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
         350        360       370       380       390       400    

>>NP_060818 (OMIM: 616190) cap-specific mRNA (nucleoside  (770 aa)
 initn: 312 init1: 284 opt: 320  Z-score: 366.9  bits: 78.8 E(85289): 1.1e-13
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)

         250       260       270       280           290           
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
                                     .: .::.:    ..:.  ..     .: :.
NP_060 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
            120       130       140       150       160       170  

        300       310        320       330       340       350     
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
        ..   .. .:. .  :    .. :   :.:    :. :::   . .....::.   .. 
NP_060 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
            180       190       200          210       220         

         360       370       380       390       400       410     
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
         ::.. :::.:. .:. . :: : ..:  :. . ::. . .:: :. : : .:   :..
NP_060 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
        230       240       250       260       270       280      

         420       430       440       450       460        470    
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
       :.::: :::..: .::: ::. .::: ::::   : : . ..  :  ...... ...   
NP_060 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
        290       300       310       320        330       340     

          480       490       500       510       520       530    
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
          . :.:   .:  ::                                           
NP_060 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
         350        360       370       380       390       400    

>>NP_001311307 (OMIM: 616190) cap-specific mRNA (nucleos  (770 aa)
 initn: 312 init1: 284 opt: 320  Z-score: 366.9  bits: 78.8 E(85289): 1.1e-13
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)

         250       260       270       280           290           
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
                                     .: .::.:    ..:.  ..     .: :.
NP_001 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
            120       130       140       150       160       170  

        300       310        320       330       340       350     
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
        ..   .. .:. .  :    .. :   :.:    :. :::   . .....::.   .. 
NP_001 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
            180       190       200          210       220         

         360       370       380       390       400       410     
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
         ::.. :::.:. .:. . :: : ..:  :. . ::. . .:: :. : : .:   :..
NP_001 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
        230       240       250       260       270       280      

         420       430       440       450       460        470    
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
       :.::: :::..: .::: ::. .::: ::::   : : . ..  :  ...... ...   
NP_001 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
        290       300       310       320        330       340     

          480       490       500       510       520       530    
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
          . :.:   .:  ::                                           
NP_001 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
         350        360       370       380       390       400    




835 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 17:59:40 2016 done: Wed Nov  2 17:59:41 2016
 Total Scan time:  8.190 Total Display time:  0.130

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com