FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3897, 193 aa 1>>>pF1KE3897 193 - 193 aa - 193 aa Library: human.CCDS.faa 18921897 residues in 33420 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0915+/-0.000698; mu= 14.6195+/- 0.042 mean_var=65.1524+/-12.914, 0's: 0 Z-trim(109.8): 15 B-trim: 0 in 0/50 Lambda= 0.158895 statistics sampled from 11270 (11284) to 11270 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.338), width: 16 Scan time: 0.990 The best scores are: opt bits E(33420) CCDS53342.1 TMED5 gene_id:50999|Hs109|chr1 ( 193) 1299 305.9 1e-83 CCDS743.1 TMED5 gene_id:50999|Hs109|chr1 ( 229) 1071 253.6 6.5e-68 CCDS12249.1 TMED1 gene_id:11018|Hs109|chr19 ( 227) 552 134.7 4.2e-32 CCDS54887.1 TICAM2 gene_id:100302736|Hs109|chr5 ( 404) 267 69.5 3.1e-12 CCDS4120.1 TMED7 gene_id:51014|Hs109|chr5 ( 224) 261 68.0 5e-12 CCDS54888.1 TICAM2 gene_id:100302736|Hs109|chr5 ( 188) 260 67.7 5.1e-12 >>CCDS53342.1 TMED5 gene_id:50999|Hs109|chr1 (193 aa) initn: 1299 init1: 1299 opt: 1299 Z-score: 1616.5 bits: 305.9 E(33420): 1e-83 Smith-Waterman score: 1299; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193) 10 20 30 40 50 60 pF1KE3 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPMPLKASLEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPMPLKASLEI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDGVHTVETEVGDYMFCFDNTFSTISEKVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 EYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDGVHTVETEVGDYMFCFDNTFSTISEKVI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 FFELILDNMGEQAQEQEDWKKYITGTDILDMKLEDILDPIIKIASDVQIRLHLGIHQQHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 FFELILDNMGEQAQEQEDWKKYITGTDILDMKLEDILDPIIKIASDVQIRLHLGIHQQHQ 130 140 150 160 170 180 190 pF1KE3 VQTKQKWAHTNSA ::::::::::::: CCDS53 VQTKQKWAHTNSA 190 >>CCDS743.1 TMED5 gene_id:50999|Hs109|chr1 (229 aa) initn: 1095 init1: 1068 opt: 1071 Z-score: 1332.9 bits: 253.6 E(33420): 6.5e-68 Smith-Waterman score: 1071; 93.1% identity (96.0% similar) in 173 aa overlap (1-173:1-173) 10 20 30 40 50 60 pF1KE3 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPMPLKASLEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPMPLKASLEI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDGVHTVETEVGDYMFCFDNTFSTISEKVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 EYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDGVHTVETEVGDYMFCFDNTFSTISEKVI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 FFELILDNMGEQAQEQEDWKKYITGTDILDMKLEDILDPIIKIASDVQIRLHLGIHQQHQ :::::::::::::::::::::::::::::::::::::. : .: : .. :. CCDS74 FFELILDNMGEQAQEQEDWKKYITGTDILDMKLEDILESINSIKSRLSKSGHIQTLLRAF 130 140 150 160 170 180 190 pF1KE3 VQTKQKWAHTNSA CCDS74 EARDRNIQESNFDRVNFWSMVNLVVMVVVSAIQVYMLKSLFEDKRKSRT 190 200 210 220 >>CCDS12249.1 TMED1 gene_id:11018|Hs109|chr19 (227 aa) initn: 560 init1: 359 opt: 552 Z-score: 690.0 bits: 134.7 E(33420): 4.2e-32 Smith-Waterman score: 552; 57.9% identity (79.3% similar) in 145 aa overlap (17-160:16-158) 10 20 30 40 50 60 pF1KE3 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPMPLKASLEI .::: . :.:: : :..::: ::::.:.:::: : .:::: CCDS12 MMAAGAALALALWLLMPPVEV-GGAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLET 10 20 30 40 50 70 80 90 100 110 pF1KE3 EYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDGVHTVE-TEVGDYMFCFDNTFSTISEKV ::::. :::::.:: : ::.: :: :.::.::::::: ::.::: .::::.:::::::. CCDS12 EYQVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCFDNSFSTISEKL 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 IFFELILDNMGEQAQEQEDWKKYITGTDILDMKLEDILDPIIKIASDVQIRLHLGIHQQH .:::::.:.. .. .: : : . . ..::.:.::: . : CCDS12 VFFELIFDSL-QDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRA 120 130 140 150 160 170 180 190 pF1KE3 QVQTKQKWAHTNSA CCDS12 FEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRPVPT 180 190 200 210 220 >>CCDS54887.1 TICAM2 gene_id:100302736|Hs109|chr5 (404 aa) initn: 205 init1: 139 opt: 267 Z-score: 333.3 bits: 69.5 E(33420): 3.1e-12 Smith-Waterman score: 267; 28.7% identity (62.4% similar) in 181 aa overlap (13-190:21-191) 10 20 30 40 50 pF1KE3 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPM ::: : .:.:: .: :..:: :: . :.:::. . CCDS54 MPRPGSAQRWAAVAGRWGCRLLALL--LLVPGPGG-----ASEITFELPDNAKQCFYEDI 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 PLKASLEIEYQVLDGAGLDIDFHLASPEGKTLVFEQRKS-DGVHTVETEVGDYMFCFDNT .. .:.::. :. :.: .: .:.::.: :..:. :. . .. : : :::.: CCDS54 AQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNE 60 70 80 90 100 110 120 130 140 150 160 pF1KE3 FSTISEKVIFFELILDNMGEQAQ--EQEDWKKYITGTDILDMKLEDILDPIIKIASDVQI :::...:...:.. ..::. .:. . .: . ..... : .: . .. CCDS54 FSTFTHKTVYFDF---QVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRL 120 130 140 150 160 170 170 180 190 pF1KE3 RLHLGIHQQHQVQTKQKWAHTNSA : : . ....:. . :. CCDS54 REAQGRSRAEDLNTRVAYWHSVDTSPGYHESDSKKSEDLSLCNVAEHSNTTEGPTGKQEG 180 190 200 210 220 230 >>CCDS4120.1 TMED7 gene_id:51014|Hs109|chr5 (224 aa) initn: 205 init1: 139 opt: 261 Z-score: 329.6 bits: 68.0 E(33420): 5e-12 Smith-Waterman score: 261; 28.9% identity (62.2% similar) in 180 aa overlap (13-188:21-190) 10 20 30 40 50 pF1KE3 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPM ::: : .:.:: .: :..:: :: . :.:::. . CCDS41 MPRPGSAQRWAAVAGRWGCRLLALL--LLVPGPGG-----ASEITFELPDNAKQCFYEDI 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 PLKASLEIEYQVLDGAGLDIDFHLASPEGKTLVFEQRKS-DGVHTVETEVGDYMFCFDNT .. .:.::. :. :.: .: .:.::.: :..:. :. . .. : : :::.: CCDS41 AQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNE 60 70 80 90 100 110 120 130 140 150 160 pF1KE3 FSTISEKVIFFELILDNMGEQAQ--EQEDWKKYITGTDILDMKLEDILDPIIKIASDVQI :::...:...:.. ..::. .:. . .: . ..... : .: . .. CCDS41 FSTFTHKTVYFDF---QVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRL 120 130 140 150 160 170 170 180 190 pF1KE3 RLHLGIHQQHQVQTK-QKWAHTNSA : : . ....:. :. CCDS41 REAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKRTTTTRVGS 180 190 200 210 220 >>CCDS54888.1 TICAM2 gene_id:100302736|Hs109|chr5 (188 aa) initn: 205 init1: 139 opt: 260 Z-score: 329.4 bits: 67.7 E(33420): 5.1e-12 Smith-Waterman score: 260; 29.1% identity (62.9% similar) in 175 aa overlap (13-184:21-185) 10 20 30 40 50 pF1KE3 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPM ::: : .:.:: .: :..:: :: . :.:::. . CCDS54 MPRPGSAQRWAAVAGRWGCRLLALL--LLVPGPGG-----ASEITFELPDNAKQCFYEDI 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 PLKASLEIEYQVLDGAGLDIDFHLASPEGKTLVFEQRKS-DGVHTVETEVGDYMFCFDNT .. .:.::. :. :.: .: .:.::.: :..:. :. . .. : : :::.: CCDS54 AQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNE 60 70 80 90 100 110 120 130 140 150 160 pF1KE3 FSTISEKVIFFELILDNMGEQAQ--EQEDWKKYITGTDILDMKLEDILDPIIKIASDVQI :::...:...:.. ..::. .:. . .: . ..... : .: . .. CCDS54 FSTFTHKTVYFDF---QVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRL 120 130 140 150 160 170 170 180 190 pF1KE3 RLHLGIHQQHQVQTKQKWAHTNSA : : . ....:. CCDS54 REAQGRSRAEDLNTRVAY 180 193 residues in 1 query sequences 18921897 residues in 33420 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Wed Aug 4 20:32:23 2021 done: Wed Aug 4 20:32:24 2021 Total Scan time: 0.990 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]