FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB3035, 621 aa 1>>>pF1KB3035 621 - 621 aa - 621 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.1784+/-0.000916; mu= 3.4959+/- 0.055 mean_var=237.2497+/-48.457, 0's: 0 Z-trim(113.8): 21 B-trim: 166 in 1/53 Lambda= 0.083267 statistics sampled from 14377 (14395) to 14377 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.442), width: 16 Scan time: 3.480 The best scores are: opt bits E(32554) CCDS12380.1 ELL gene_id:8178|Hs108|chr19 ( 621) 4178 515.0 1.2e-145 CCDS4080.1 ELL2 gene_id:22936|Hs108|chr5 ( 640) 1298 169.0 1.7e-41 >>CCDS12380.1 ELL gene_id:8178|Hs108|chr19 (621 aa) initn: 4178 init1: 4178 opt: 4178 Z-score: 2728.2 bits: 515.0 E(32554): 1.2e-145 Smith-Waterman score: 4178; 100.0% identity (100.0% similar) in 621 aa overlap (1-621:1-621) 10 20 30 40 50 60 pF1KB3 MAALKEDRSYGLSCGRVSDGSKVSVFHVKLTDSALRAFESYRARQDSVSLRPSIRFQGSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MAALKEDRSYGLSCGRVSDGSKVSVFHVKLTDSALRAFESYRARQDSVSLRPSIRFQGSQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 GHISIPQPDCPAEARTFSFYLSNIGRDNPQGSFDCIQQYVSSHGEVHLDCLGSIQDKITV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 GHISIPQPDCPAEARTFSFYLSNIGRDNPQGSFDCIQQYVSSHGEVHLDCLGSIQDKITV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB3 CATDDSYQKARQSMAQAEEETRSRSAIVIKAGGRYLGKKVQFRKPAPGATDAVPSRKRAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 CATDDSYQKARQSMAQAEEETRSRSAIVIKAGGRYLGKKVQFRKPAPGATDAVPSRKRAT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB3 PINLASAIRKSGASAVSGGSGVSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PINLASAIRKSGASAVSGGSGVSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB3 ALDGLLQQVANMSAKDGTCTLQDCMYKDVQKDWPGYSEGDQQLLKRVLVRKLCQPQSTGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 ALDGLLQQVANMSAKDGTCTLQDCMYKDVQKDWPGYSEGDQQLLKRVLVRKLCQPQSTGS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB3 LLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPN 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB3 GREALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 GREALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB3 PTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHAT 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB3 PGAPADTPGLNGTCSVSSVPTSTSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PGAPADTPGLNGTCSVSSVPTSTSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLH 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB3 ARIERITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 ARIERITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHS 550 560 570 580 590 600 610 620 pF1KB3 KLAHIKRLIAEYDQRQLQAWP ::::::::::::::::::::: CCDS12 KLAHIKRLIAEYDQRQLQAWP 610 620 >>CCDS4080.1 ELL2 gene_id:22936|Hs108|chr5 (640 aa) initn: 1487 init1: 688 opt: 1298 Z-score: 858.3 bits: 169.0 E(32554): 1.7e-41 Smith-Waterman score: 1883; 47.9% identity (73.7% similar) in 643 aa overlap (4-620:9-639) 10 20 30 40 50 pF1KB3 MAALKEDRSYGLSCGRVSDGSKVSVFHVKLTDSALRAFESYRARQDSVSLRPSIR :.:.. :::::::... ....:.:::::..:.::.:.:..... . .::::. CCDS40 MAAGGTGGLREEQRYGLSCGRLGQ-DNITVLHVKLTETAIRALETYQSHKNLIPFRPSIQ 10 20 30 40 50 60 70 80 90 100 110 pF1KB3 FQGSQGHISIPQPDCPAEARTFSFYLSNIGRDNPQGSFDCIQQYVSSHGEVHLDCLGSIQ ::: .: ..::. : :...:.:::::.:.:::::::::::: :: : .:.::: :: CCDS40 FQGLHGLVKIPKNDPLNEVHNFNFYLSNVGKDNPQGSFDCIQQTFSSSGASQLNCLGFIQ 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB3 DKITVCATDDSYQKARQSMAQAEEETRSRSAIVIKAGGRYLGKKVQFRKPAPGATDAVPS ::::::::.:::: .:. :.:::::.:.::. ::: :: :.::.::.:: ...:.:: CCDS40 DKITVCATNDSYQMTRERMTQAEEESRNRSTKVIKPGGPYVGKRVQIRKAPQAVSDTVPE 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB3 RKRATPINLASAIRKSGASAVSGGSGVSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLT :::.::.: :..:::. .: : .::::.::::.:::::. :.: ::: ::::::.. CCDS40 RKRSTPMNPANTIRKTHSS-----STISQRPYRDRVIHLLALKAYKKPELLARLQKDGVN 180 190 200 210 220 230 240 250 260 270 280 290 pF1KB3 QADKDALDGLLQQVANMSAKDGTCTLQDCMYKDVQKDWPGYSEGDQQLLKRVLVRKLCQP : ::..: ..::::::...:: . ::.: ..:..:.::::::: :.. :. :: ::: CCDS40 QKDKNSLGAILQQVANLNSKDLSYTLKDYVFKELQRDWPGYSEIDRRSLESVLSRKLNPS 240 250 260 270 280 290 300 310 320 330 340 350 pF1KB3 QSTGSLLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGK :... : . :: ..: ::::: .::::: ::: ::::.:.:. :..::. CCDS40 QNAA---GTSRSESPVCSSRDAVSSPQKRLLDSEFIDPLMNKKARISHLTNRVPPTLNGH 300 310 320 330 340 350 360 370 380 390 400 pF1KB3 LGVPNGREALLPTPGPPAS----TDTLSSSTHLPPRLEPPRAHD--------PLADVSND :. :..... : :::. : ::.:: .::. . : . ..: CCDS40 LN-PTSEKSAAGLPLPPAAAAIPTPPPLPSTYLPIS-HPPQIVNSNSNSPSTPEGRGTQD 360 370 380 390 400 410 420 430 440 450 pF1KB3 L---GHSGRDC--EHGEAAAPAPTVRLGLP---LLTDCAQPSRPHGSPSRSKPKKKSKKH : . : : : . . : :: .: : .: . . : :..: ::::::: CCDS40 LPVDSFSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKH 410 420 430 440 450 460 460 470 480 490 500 pF1KB3 KDKERAAE------DKPRAQLPDCAPATHATPGAPADTPGLNGTCSVSSVPTSTSETPDY :.:.. . .. . .: .. . ..: .. :.. :..: :.. : ::: CCDS40 KEKDQIKKHDIETIEEKEEDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAI-ELPDY 470 480 490 500 510 520 510 520 530 540 550 560 pF1KB3 LLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQGSEEYET :.:: :: : ::::.::.::::::.::: ::::.: ..::: .:::: ..:: ::.::.. CCDS40 LIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQN 530 540 550 560 570 580 570 580 590 600 610 620 pF1KB3 TRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQRQLQAWP .. ..::::.:::... :: .::.::::::.:::::::::.:.::.: ..: CCDS40 VHEEVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS 590 600 610 620 630 640 621 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 03:16:34 2016 done: Tue Nov 8 03:16:34 2016 Total Scan time: 3.480 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]