FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1611, 115 aa 1>>>pF1KE1611 115 - 115 aa - 115 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5898+/-0.000329; mu= 12.9444+/- 0.020 mean_var=46.6584+/- 9.509, 0's: 0 Z-trim(113.4): 12 B-trim: 0 in 0/49 Lambda= 0.187763 statistics sampled from 22752 (22755) to 22752 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.267), width: 16 Scan time: 4.250 The best scores are: opt bits E(85289) NP_000980 (OMIM: 180467) 60S ribosomal protein L30 ( 115) 739 207.2 4.7e-54 >>NP_000980 (OMIM: 180467) 60S ribosomal protein L30 [Ho (115 aa) initn: 739 init1: 739 opt: 739 Z-score: 1091.3 bits: 207.2 E(85289): 4.7e-54 Smith-Waterman score: 739; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115) 10 20 30 40 50 60 pF1KE1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 70 80 90 100 110 115 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 09:41:05 2016 done: Sun Nov 6 09:41:06 2016 Total Scan time: 4.250 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]