FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1621, 135 aa 1>>>pF1KE1621 135 - 135 aa - 135 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1324+/-0.000309; mu= 12.6748+/- 0.019 mean_var=65.6769+/-13.047, 0's: 0 Z-trim(116.1): 7 B-trim: 0 in 0/55 Lambda= 0.158259 statistics sampled from 27065 (27069) to 27065 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.317), width: 16 Scan time: 4.730 The best scores are: opt bits E(85289) NP_115662 (OMIM: 612382) mediator of RNA polymeras ( 135) 892 211.7 3e-55 >>NP_115662 (OMIM: 612382) mediator of RNA polymerase II (135 aa) initn: 892 init1: 892 opt: 892 Z-score: 1112.9 bits: 211.7 E(85289): 3e-55 Smith-Waterman score: 892; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135) 10 20 30 40 50 60 pF1KE1 MAEKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 MAEKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 ITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPED 70 80 90 100 110 120 130 pF1KE1 MAKYRSIRGEDHPPS ::::::::::::::: NP_115 MAKYRSIRGEDHPPS 130 135 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 09:41:40 2016 done: Sun Nov 6 09:41:41 2016 Total Scan time: 4.730 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]