FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1702, 204 aa
  1>>>pF1KE1702 204 - 204 aa - 204 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6151+/-0.000633; mu= 12.4253+/- 0.038
 mean_var=72.9131+/-14.559, 0's: 0 Z-trim(111.9): 15  B-trim: 0 in 0/52
 Lambda= 0.150201
 statistics sampled from 12717 (12728) to 12717 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.391), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS42314.1 CSF3 gene_id:1440|Hs108|chr17          ( 204) 1366 304.4 3.2e-83
CCDS11357.1 CSF3 gene_id:1440|Hs108|chr17          ( 207) 1350 300.9 3.6e-82
CCDS11358.2 CSF3 gene_id:1440|Hs108|chr17          ( 171)  676 154.8 2.8e-38


>>CCDS42314.1 CSF3 gene_id:1440|Hs108|chr17               (204 aa)
 initn: 1366 init1: 1366 opt: 1366  Z-score: 1607.5  bits: 304.4 E(32554): 3.2e-83
Smith-Waterman score: 1366; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE1 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG
              130       140       150       160       170       180

              190       200    
pF1KE1 VLVASHLQSFLEVSYRVLRHLAQP
       ::::::::::::::::::::::::
CCDS42 VLVASHLQSFLEVSYRVLRHLAQP
              190       200    

>>CCDS11357.1 CSF3 gene_id:1440|Hs108|chr17               (207 aa)
 initn: 1352 init1: 936 opt: 1350  Z-score: 1588.7  bits: 300.9 E(32554): 3.6e-82
Smith-Waterman score: 1350; 98.6% identity (98.6% similar) in 207 aa overlap (1-204:1-207)

               10        20        30        40        50        60
pF1KE1 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
               10        20        30        40        50        60

                  70        80        90       100       110       
pF1KE1 LQEKL---CATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG
       :::::   ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KE1 LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRR
              130       140       150       160       170       180

       180       190       200    
pF1KE1 AGGVLVASHLQSFLEVSYRVLRHLAQP
       :::::::::::::::::::::::::::
CCDS11 AGGVLVASHLQSFLEVSYRVLRHLAQP
              190       200       

>>CCDS11358.2 CSF3 gene_id:1440|Hs108|chr17               (171 aa)
 initn: 1092 init1: 676 opt: 676  Z-score: 800.6  bits: 154.8 E(32554): 2.8e-38
Smith-Waterman score: 1029; 82.4% identity (82.8% similar) in 204 aa overlap (1-204:1-171)

               10        20        30        40        50        60
pF1KE1 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQ
       ::::: .                                  :::::::::::::::::::
CCDS11 LQEKLVSE---------------------------------AGCLSQLHSGLFLYQGLLQ
                                                70        80       

              130       140       150       160       170       180
pF1KE1 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG
        90       100       110       120       130       140       

              190       200    
pF1KE1 VLVASHLQSFLEVSYRVLRHLAQP
       ::::::::::::::::::::::::
CCDS11 VLVASHLQSFLEVSYRVLRHLAQP
       150       160       170 




204 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:49:32 2016 done: Sun Nov  6 09:49:33 2016
 Total Scan time:  2.320 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]