Result of FASTA (omim) for
pFN21AB7107
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7107, 229 aa
1>>>pF1KB7107 229 - 229 aa - 229 aa
Library: /omim/omim.rfq.tfa
64369986 residues in 92320 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1138+/-0.000566; mu= 13.9215+/- 0.035
mean_var=79.9449+/-16.484, 0's: 0 Z-trim(105.5): 122 B-trim: 0 in 0/50
Lambda= 0.143443
statistics sampled from 14100 (14223) to 14100 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.336), E-opt: 0.2 (0.154), width: 16
Scan time: 2.870
The best scores are: opt bits E(92320)
NP_001268649 (OMIM: 191339) polyubiquitin-B precur ( 229) 1456 311.9 6.3e-85
NP_001268646 (OMIM: 191339) polyubiquitin-B precur ( 229) 1456 311.9 6.3e-85
NP_001268647 (OMIM: 191339) polyubiquitin-B precur ( 229) 1456 311.9 6.3e-85
NP_001268648 (OMIM: 191339) polyubiquitin-B precur ( 229) 1456 311.9 6.3e-85
NP_001268645 (OMIM: 191339) polyubiquitin-B precur ( 229) 1456 311.9 6.3e-85
NP_061828 (OMIM: 191339) polyubiquitin-B precursor ( 229) 1456 311.9 6.3e-85
NP_066289 (OMIM: 191340) polyubiquitin-C [Homo sap ( 685) 1443 309.6 9e-84
NP_001029102 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 483 110.3 1.7e-24
NP_001307946 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 483 110.3 1.7e-24
NP_003324 (OMIM: 191321) ubiquitin-60S ribosomal p ( 128) 483 110.3 1.7e-24
NP_001307947 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 483 110.3 1.7e-24
NP_001307948 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 483 110.3 1.7e-24
NP_001307949 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 483 110.3 1.7e-24
NP_001307950 (OMIM: 191321) ubiquitin-60S ribosoma ( 135) 483 110.3 1.8e-24
XP_006722934 (OMIM: 191321) ubiquitin-60S ribosoma ( 156) 483 110.4 1.9e-24
XP_005260111 (OMIM: 191321) ubiquitin-60S ribosoma ( 156) 483 110.4 1.9e-24
XP_005260110 (OMIM: 191321) ubiquitin-60S ribosoma ( 156) 483 110.4 1.9e-24
XP_005260109 (OMIM: 191321) ubiquitin-60S ribosoma ( 156) 483 110.4 1.9e-24
NP_001129064 (OMIM: 191343) ubiquitin-40S ribosoma ( 156) 482 110.2 2.2e-24
NP_002945 (OMIM: 191343) ubiquitin-40S ribosomal p ( 156) 482 110.2 2.2e-24
NP_001170884 (OMIM: 191343) ubiquitin-40S ribosoma ( 156) 482 110.2 2.2e-24
XP_016882687 (OMIM: 191321) ubiquitin-60S ribosoma ( 203) 483 110.5 2.4e-24
NP_006147 (OMIM: 603171) NEDD8 precursor [Homo sap ( 81) 303 72.9 2e-13
NP_003724 (OMIM: 603281) 2'-5'-oligoadenylate synt ( 514) 236 59.7 1.1e-08
NP_001248754 (OMIM: 603281) 2'-5'-oligoadenylate s ( 384) 224 57.1 5.1e-08
NP_001307951 (OMIM: 191321) ubiquitin-60S ribosoma ( 99) 204 52.5 3.3e-07
NP_055050 (OMIM: 312070) ubiquitin-like protein 4A ( 157) 197 51.2 1.3e-06
NP_005092 (OMIM: 147571,616126) ubiquitin-like pro ( 165) 169 45.4 7.4e-05
NP_004553 (OMIM: 167000,211980,600116,602544) E3 u ( 465) 165 45.0 0.00028
NP_054642 (OMIM: 167000,211980,600116,602544) E3 u ( 437) 162 44.4 0.00041
XP_011534165 (OMIM: 167000,211980,600116,602544) E ( 464) 162 44.4 0.00043
NP_001988 (OMIM: 134690) ubiquitin-like protein fu ( 133) 155 42.4 0.00047
NP_006389 (OMIM: 606050) ubiquitin D [Homo sapiens ( 165) 154 42.3 0.00063
XP_016869742 (OMIM: 615211) E3 ubiquitin-protein l ( 729) 161 44.3 0.00069
XP_016866397 (OMIM: 167000,211980,600116,602544) E ( 503) 159 43.8 0.0007
NP_690856 (OMIM: 615211) E3 ubiquitin-protein liga ( 802) 161 44.4 0.00074
NP_981957 (OMIM: 611127) ubiquitin-like protein 4B ( 174) 153 42.1 0.00076
XP_011526244 (OMIM: 607990) E3 ubiquitin-protein l ( 758) 160 44.1 0.00082
NP_001276979 (OMIM: 607990) E3 ubiquitin-protein l ( 793) 160 44.2 0.00085
NP_001276981 (OMIM: 607990) E3 ubiquitin-protein l ( 793) 160 44.2 0.00085
NP_001276980 (OMIM: 607990) E3 ubiquitin-protein l ( 793) 160 44.2 0.00085
NP_001041666 (OMIM: 607990) E3 ubiquitin-protein l ( 793) 160 44.2 0.00085
NP_037414 (OMIM: 607990) E3 ubiquitin-protein liga ( 806) 160 44.2 0.00086
NP_002865 (OMIM: 600062) UV excision repair protei ( 409) 156 43.1 0.00093
NP_005868 (OMIM: 605595) splicing factor 3A subuni ( 793) 154 42.9 0.002
NP_079230 (OMIM: 616388) ubiquitin domain-containi ( 227) 146 40.8 0.0025
NP_001257292 (OMIM: 600061) UV excision repair pro ( 308) 143 40.3 0.0049
NP_001257291 (OMIM: 600061) UV excision repair pro ( 362) 143 40.3 0.0055
NP_005044 (OMIM: 600061) UV excision repair protei ( 363) 143 40.3 0.0055
XP_024307399 (OMIM: 600061) UV excision repair pro ( 382) 143 40.4 0.0057
>>NP_001268649 (OMIM: 191339) polyubiquitin-B precursor (229 aa)
initn: 1456 init1: 1456 opt: 1456 Z-score: 1646.4 bits: 311.9 E(92320): 6.3e-85
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
130 140 150 160 170 180
190 200 210 220
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
190 200 210 220
>>NP_001268646 (OMIM: 191339) polyubiquitin-B precursor (229 aa)
initn: 1456 init1: 1456 opt: 1456 Z-score: 1646.4 bits: 311.9 E(92320): 6.3e-85
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
130 140 150 160 170 180
190 200 210 220
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
190 200 210 220
>>NP_001268647 (OMIM: 191339) polyubiquitin-B precursor (229 aa)
initn: 1456 init1: 1456 opt: 1456 Z-score: 1646.4 bits: 311.9 E(92320): 6.3e-85
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
130 140 150 160 170 180
190 200 210 220
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
190 200 210 220
>>NP_001268648 (OMIM: 191339) polyubiquitin-B precursor (229 aa)
initn: 1456 init1: 1456 opt: 1456 Z-score: 1646.4 bits: 311.9 E(92320): 6.3e-85
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
130 140 150 160 170 180
190 200 210 220
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
190 200 210 220
>>NP_001268645 (OMIM: 191339) polyubiquitin-B precursor (229 aa)
initn: 1456 init1: 1456 opt: 1456 Z-score: 1646.4 bits: 311.9 E(92320): 6.3e-85
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
130 140 150 160 170 180
190 200 210 220
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
190 200 210 220
>>NP_061828 (OMIM: 191339) polyubiquitin-B precursor [Ho (229 aa)
initn: 1456 init1: 1456 opt: 1456 Z-score: 1646.4 bits: 311.9 E(92320): 6.3e-85
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
130 140 150 160 170 180
190 200 210 220
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
190 200 210 220
>>NP_066289 (OMIM: 191340) polyubiquitin-C [Homo sapiens (685 aa)
initn: 1443 init1: 1443 opt: 1443 Z-score: 1625.5 bits: 309.6 E(92320): 9e-84
Smith-Waterman score: 1443; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228)
10 20 30 40 50 60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
130 140 150 160 170 180
190 200 210 220
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
190 200 210 220 230 240
NP_066 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
250 260 270 280 290 300
>--
initn: 1443 init1: 1443 opt: 1443 Z-score: 1625.5 bits: 309.6 E(92320): 9e-84
Smith-Waterman score: 1443; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:229-456)
10 20 30
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
::::::::::::::::::::::::::::::
NP_066 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
200 210 220 230 240 250
40 50 60 70 80 90
pF1KB7 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
260 270 280 290 300 310
100 110 120 130 140 150
pF1KB7 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
320 330 340 350 360 370
160 170 180 190 200 210
pF1KB7 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
380 390 400 410 420 430
220
pF1KB7 YNIQKESTLHLVLRLRGGC
::::::::::::::::::
NP_066 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR
440 450 460 470 480 490
>--
initn: 1443 init1: 1443 opt: 1443 Z-score: 1625.5 bits: 309.6 E(92320): 9e-84
Smith-Waterman score: 1443; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:457-684)
10 20 30
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
::::::::::::::::::::::::::::::
NP_066 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
430 440 450 460 470 480
40 50 60 70 80 90
pF1KB7 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
490 500 510 520 530 540
100 110 120 130 140 150
pF1KB7 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
550 560 570 580 590 600
160 170 180 190 200 210
pF1KB7 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
610 620 630 640 650 660
220
pF1KB7 YNIQKESTLHLVLRLRGGC
::::::::::::::::::
NP_066 YNIQKESTLHLVLRLRGGV
670 680
>>NP_001029102 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 483 init1: 483 opt: 483 Z-score: 561.5 bits: 110.3 E(92320): 1.7e-24
Smith-Waterman score: 483; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:1-77)
10 20 30 40 50 60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
::::::::::::::::.
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
>>NP_001307946 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 483 init1: 483 opt: 483 Z-score: 561.5 bits: 110.3 E(92320): 1.7e-24
Smith-Waterman score: 483; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:1-77)
10 20 30 40 50 60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
::::::::::::::::.
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
>>NP_003324 (OMIM: 191321) ubiquitin-60S ribosomal prote (128 aa)
initn: 483 init1: 483 opt: 483 Z-score: 561.5 bits: 110.3 E(92320): 1.7e-24
Smith-Waterman score: 483; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:1-77)
10 20 30 40 50 60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
::::::::::::::::.
NP_003 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
229 residues in 1 query sequences
64369986 residues in 92320 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Oct 24 21:54:22 2019 done: Thu Oct 24 21:54:22 2019
Total Scan time: 2.870 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]