(Circular) (Six-base) MAPSORT of: pFN21AE1619.seq Check: 2652 from: 1 to: 5101 pFN21AE1619 5101 bp With 182 enzymes: SgfI * August 16, 2010 14:52 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2287 2287 Size: 5101 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2911 278 Size: 53 83 186 936 1375 2468 Fragments arranged by size: 2468 1375 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2444 1937 Size: 507 4594 Acc65I G'GTAC_C Cuts at: 2422 2422 Size: 5101 AclI AA'CG_TT Cuts at: 1563 3228 3601 1563 Size: 1665 373 3063 Fragments arranged by size: 3063 1665 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2177 3164 4548 4816 1632 Size: 545 987 1384 268 1917 Fragments arranged by size: 1917 1384 987 545 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 4904 AflIII A'CryG_T Cuts at: 1203 4000 4977 1203 Size: 2797 977 1327 Fragments arranged by size: 2797 1327 977 AgeI A'CCGG_T Cuts at: 3932 3932 Size: 5101 AhdI GACnn_n'nnGTC Cuts at: 3830 3830 Size: 5101 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5101 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5101 AlwNI CAG_nnn'CTG Cuts at: 2116 2844 4416 2116 Size: 728 1572 2801 Fragments arranged by size: 2801 1572 728 ApaI G_GGCC'C Cuts at: 2152 2152 Size: 5101 ApaLI G'TGCA_C Cuts at: 3158 4314 3158 Size: 1156 3945 ApoI r'AATT_y Cuts at: 1493 2410 2636 2788 4897 1493 Size: 917 226 152 2109 1697 Fragments arranged by size: 2109 1697 917 226 152 AseI AT'TA_AT Cuts at: 160 1032 3655 160 Size: 872 2623 1606 Fragments arranged by size: 2623 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5101 AvaI C'yCGr_G Cuts at: 1870 1943 2426 1870 Size: 73 483 4545 Fragments arranged by size: 4545 483 73 BamHI G'GATC_C Cuts at: 2431 2798 2431 Size: 367 4734 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2299 2422 3877 618 Size: 325 217 627 512 123 1455 1842 Fragments arranged by size: 1842 1455 627 512 325 217 123 BanII G_rGCy'C Cuts at: 1391 2068 2130 2152 2247 2420 1391 Size: 677 62 22 95 173 4072 Fragments arranged by size: 4072 677 173 95 62 22 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2168 928 Size: 971 269 3861 Fragments arranged by size: 3861 971 269 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3292 3326 1903 Size: 34 50 34 1271 34 3678 Fragments arranged by size: 3678 1271 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2993 4203 2993 Size: 1210 3891 BclI T'GATC_A Cuts at: 1548 1548 Size: 5101 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3712 136 Size: 107 122 71 631 605 2040 1525 Fragments arranged by size: 2040 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5096 5096 Size: 5101 BlpI GC'TnA_GC Cuts at: 2024 2518 2024 Size: 494 4607 Bme1580I G_kGCm'C Cuts at: 1790 2035 2152 3162 4318 1790 Size: 245 117 1010 1156 2573 Fragments arranged by size: 2573 1156 1010 245 117 BmgBI CAC'GTC Cuts at: 1318 2258 1318 Size: 940 4161 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2832 3790 442 Size: 416 53 83 399 24 1415 958 1753 Fragments arranged by size: 1753 1415 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5101 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2266 2266 Size: 5101 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 3761 1239 Size: 2522 2579 Bpu10I CC'TnA_GC Cuts at: 2205 2205 Size: 5101 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3226 4091 4389 3226 Size: 865 298 3938 Fragments arranged by size: 3938 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3764 882 Size: 617 2265 2219 Fragments arranged by size: 2265 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2325 2892 493 Size: 711 1121 567 2702 Fragments arranged by size: 2702 1121 711 567 BsaBI GATnn'nnATC Cuts at: 5095 5095 Size: 5101 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2908 3290 3925 275 Size: 53 83 186 936 1375 382 635 1451 Fragments arranged by size: 1451 1375 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3534 3932 4206 4353 4764 3534 Size: 398 274 147 411 3871 Fragments arranged by size: 3871 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 4876 Fragments arranged by size: 4876 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2076 2242 1186 Size: 890 166 4045 Fragments arranged by size: 4045 890 166 BseYI C'CCAG_C Cuts at: 2368 4304 4800 2368 Size: 1936 496 2669 Fragments arranged by size: 2669 1936 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4528 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2551 3312 4340 1540 Size: 275 186 550 761 1028 2301 Fragments arranged by size: 2301 1028 761 550 275 186 BsiHKAI G_wGCw'C Cuts at: 2130 3162 3247 4318 2130 Size: 1032 85 1071 2913 Fragments arranged by size: 2913 1071 1032 85 BsmI GAATG_Cn' Cuts at: 2612 2705 2612 Size: 93 5008 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2035 2068 2130 2152 2247 2420 3162 Size: 399 245 33 62 22 95 173 742 Cuts at: 3162 3247 4318 1391 Size: 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 245 173 95 85 62 33 22 BspEI T'CCGG_A Cuts at: 4764 4764 Size: 5101 BspHI T'CATG_A Cuts at: 2990 4720 2990 Size: 1730 3371 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2238 2287 2456 844 Size: 1394 49 169 3489 Fragments arranged by size: 3489 1394 169 49 BsrBI CCG'CTC Cuts at: 1394 1823 2250 2988 1394 Size: 429 427 738 3507 Fragments arranged by size: 3507 738 429 427 BsrDI GCAATG_nn' Cuts at: 65 1248 3596 3770 65 Size: 1183 2348 174 1396 Fragments arranged by size: 2348 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3745 3932 1700 Size: 110 1935 187 2869 Fragments arranged by size: 2869 1935 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5101 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5101 BssSI C'ACGA_G Cuts at: 3161 4173 3161 Size: 1012 4089 BstAPI GCAn_nnn'nTGC Cuts at: 794 2051 794 Size: 1257 3844 BstBI TT'CG_AA Cuts at: 3905 3905 Size: 5101 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5101 BstYI r'GATC_y Cuts at: 1972 2188 2431 2798 3183 3200 4652 4738 4750 Size: 216 243 367 385 17 1452 86 12 Cuts at: 4750 5096 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 385 367 346 243 216 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2085 513 Size: 552 1020 3529 Fragments arranged by size: 3529 1020 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4362 Fragments arranged by size: 4362 683 56 BtsI GCAGTG_nn' Cuts at: 2045 2617 3411 3431 2045 Size: 572 794 20 3715 Fragments arranged by size: 3715 794 572 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5101 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5066 DraI TTT'AAA Cuts at: 2405 2405 Size: 5101 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4108 809 Size: 507 2792 1802 Fragments arranged by size: 2792 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2548 3437 5066 Size: 54 1425 50 275 18 718 889 1629 Cuts at: 5066 8 Size: 43 Fragments arranged by size: 1629 1425 889 718 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2548 1537 Size: 275 736 4090 Fragments arranged by size: 4090 736 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2178 3031 1353 Size: 825 853 3423 Fragments arranged by size: 3423 853 825 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3688 4062 4208 387 Size: 1064 138 2099 374 146 1280 Fragments arranged by size: 2099 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2128 2128 Size: 5101 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2177 3164 3761 4548 4816 1239 Size: 393 545 987 597 787 268 1524 Fragments arranged by size: 1524 987 787 597 545 393 268 EcoO109I rG'GnC_Cy Cuts at: 2113 2149 2113 Size: 36 5065 EcoRI G'AATT_C Cuts at: 2410 2788 2410 Size: 378 4723 FspI TGC'GCA Cuts at: 3607 3607 Size: 5101 HaeII r_GCGC'y Cuts at: 1678 4248 1678 Size: 2570 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3742 3774 3816 3848 1373 Size: 32 135 32 2170 32 42 32 2626 Fragments arranged by size: 2626 2170 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2445 2691 669 Size: 988 281 507 246 3079 Fragments arranged by size: 3079 988 507 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5101 HpaI GTT'AAC Cuts at: 2691 2691 Size: 5101 KpnI G_GTAC'C Cuts at: 2426 2426 Size: 5101 MfeI C'AATT_G Cuts at: 2700 2700 Size: 5101 MluI A'CGCG_T Cuts at: 4977 4977 Size: 5101 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4215 4399 1305 Size: 2910 184 2007 Fragments arranged by size: 2910 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3279 Fragments arranged by size: 3279 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3059 3418 3577 518 Size: 648 1893 359 159 2042 Fragments arranged by size: 2042 1893 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2018 2517 3194 4342 4587 1606 Size: 412 499 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 499 412 245 NcoI C'CATG_G Cuts at: 513 1065 2085 513 Size: 552 1020 3529 Fragments arranged by size: 3529 1020 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5101 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5101 NotI GC'GGCC_GC Cuts at: 2548 2548 Size: 5101 NspI r_CATG'y Cuts at: 1132 1229 2459 4004 1132 Size: 97 1230 1545 2229 Fragments arranged by size: 2229 1545 1230 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5101 PciI A'CATG_T Cuts at: 4000 4000 Size: 5101 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5101 PmeI GTTT'AAAC Cuts at: 2405 2405 Size: 5101 PmlI CAC'GTG Cuts at: 2325 2325 Size: 5101 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3170 3202 4683 4715 3170 Size: 32 1481 32 3556 Fragments arranged by size: 3556 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5101 PsiI TTA'TAA Cuts at: 2671 2671 Size: 5101 PspOMI G'GGCC_C Cuts at: 2148 2148 Size: 5101 PstI C_TGCA'G Cuts at: 830 2173 2235 2393 2453 830 Size: 1343 62 158 60 3478 Fragments arranged by size: 3478 1343 158 62 60 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5101 SacI G_AGCT'C Cuts at: 2130 2130 Size: 5101 SalI G'TCGA_C Cuts at: 1936 2443 1936 Size: 507 4594 SbfI CC_TGCA'GG Cuts at: 2235 2453 2235 Size: 218 4883 ScaI AGT'ACT Cuts at: 3349 5061 3349 Size: 1712 3389 SfcI C'TryA_G Cuts at: 826 1045 2169 2231 2389 2449 3584 4265 4456 Size: 219 1124 62 158 60 1135 681 191 Cuts at: 4456 826 Size: 1471 Fragments arranged by size: 1471 1135 1124 681 219 191 158 62 60 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5101 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5101 SmaI CCC'GGG Cuts at: 1872 2428 1872 Size: 556 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3205 4106 4368 820 Size: 197 926 1262 901 262 1553 Fragments arranged by size: 1553 1262 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 2892 493 Size: 2399 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5101 SphI G_CATG'C Cuts at: 1132 2459 1132 Size: 1327 3774 SspI AAT'ATT Cuts at: 5 52 3025 5 Size: 47 2973 2081 Fragments arranged by size: 2973 2081 47 StuI AGG'CCT Cuts at: 1517 2104 2136 2210 1517 Size: 587 32 74 4408 Fragments arranged by size: 4408 587 74 32 StyI C'CwwG_G Cuts at: 513 1065 2085 2211 2540 513 Size: 552 1020 126 329 3074 Fragments arranged by size: 3074 1020 552 329 126 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3128 3145 3298 3483 3928 325 Size: 1255 1548 17 153 185 445 1498 Fragments arranged by size: 1548 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3347 5059 96 Size: 274 80 33 51 1443 1370 1712 138 Fragments arranged by size: 1712 1443 1370 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2283 2315 5061 5093 2283 Size: 32 2746 32 2291 Fragments arranged by size: 2746 2291 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5101 XbaI T'CTAG_A Cuts at: 2437 2437 Size: 5101 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5101 XmaI C'CCGG_G Cuts at: 1870 2426 1870 Size: 556 4545 XmnI GAAnn'nnTTC Cuts at: 3230 3230 Size: 5101 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2909 276 Size: 53 83 186 936 1375 2468 Fragments arranged by size: 2468 1375 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PmlI PpiI PshAI PsiI PspOMI PstI PvuI SacI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PpuMI PspXI PsrI PvuII RsrII SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI