(Circular) (Six-base) MAPSORT of: pFN21AE1631.seq Check: 3700 from: 1 to: 5146 pFN21AE1631 5146 bp With 182 enzymes: SgfI * August 16, 2010 14:48 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2956 278 Size: 53 83 186 936 1420 2468 Fragments arranged by size: 2468 1420 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2489 1937 Size: 552 4594 Acc65I G'GTAC_C Cuts at: 2467 2467 Size: 5146 AclI AA'CG_TT Cuts at: 1563 2382 3273 3646 1563 Size: 819 891 373 3063 Fragments arranged by size: 3063 891 819 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3209 4593 4861 1632 Size: 1577 1384 268 1917 Fragments arranged by size: 1917 1577 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 4949 AflIII A'CryG_T Cuts at: 1203 4045 5022 1203 Size: 2842 977 1327 Fragments arranged by size: 2842 1327 977 AgeI A'CCGG_T Cuts at: 3977 3977 Size: 5146 AhdI GACnn_n'nnGTC Cuts at: 3875 3875 Size: 5146 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5146 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2136 1184 Size: 952 4194 AlwNI CAG_nnn'CTG Cuts at: 2151 2889 4461 2151 Size: 738 1572 2836 Fragments arranged by size: 2836 1572 738 ApaLI G'TGCA_C Cuts at: 3203 4359 3203 Size: 1156 3990 ApoI r'AATT_y Cuts at: 1493 2455 2681 2833 4942 1493 Size: 962 226 152 2109 1697 Fragments arranged by size: 2109 1697 962 226 152 AseI AT'TA_AT Cuts at: 160 1032 3700 160 Size: 872 2668 1606 Fragments arranged by size: 2668 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5146 AvaI C'yCGr_G Cuts at: 1870 1943 2471 1870 Size: 73 528 4545 Fragments arranged by size: 4545 528 73 BamHI G'GATC_C Cuts at: 2476 2843 2476 Size: 367 4779 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2467 3922 618 Size: 325 217 627 680 1455 1842 Fragments arranged by size: 1842 1455 680 627 325 217 BanII G_rGCy'C Cuts at: 1391 2465 1391 Size: 1074 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2029 2289 928 Size: 971 130 260 3785 Fragments arranged by size: 3785 971 260 130 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3337 3371 1903 Size: 34 1400 34 3678 Fragments arranged by size: 3678 1400 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3038 4248 3038 Size: 1210 3936 BclI T'GATC_A Cuts at: 1548 1548 Size: 5146 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3757 136 Size: 107 122 71 631 605 2085 1525 Fragments arranged by size: 2085 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5141 5141 Size: 5146 BlpI GC'TnA_GC Cuts at: 2563 2563 Size: 5146 Bme1580I G_kGCm'C Cuts at: 1790 3207 4363 1790 Size: 1417 1156 2573 Fragments arranged by size: 2573 1417 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5146 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2877 3835 442 Size: 416 53 83 399 24 1460 958 1753 Fragments arranged by size: 1753 1460 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5146 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2071 3806 1239 Size: 832 1735 2579 Fragments arranged by size: 2579 1735 832 Bpu10I CC'TnA_GC Cuts at: 2076 2076 Size: 5146 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3271 4136 4434 3271 Size: 865 298 3983 Fragments arranged by size: 3983 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3809 882 Size: 617 2310 2219 Fragments arranged by size: 2310 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2937 493 Size: 711 1733 2702 Fragments arranged by size: 2702 1733 711 BsaBI GATnn'nnATC Cuts at: 5140 5140 Size: 5146 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2953 3335 3970 275 Size: 53 83 186 936 1420 382 635 1451 Fragments arranged by size: 1451 1420 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2443 3579 3977 4251 4398 4809 2443 Size: 1136 398 274 147 411 2780 Fragments arranged by size: 2780 1136 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 4921 Fragments arranged by size: 4921 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2182 1186 Size: 996 4150 BseYI C'CCAG_C Cuts at: 2044 2109 4349 4845 2044 Size: 65 2240 496 2345 Fragments arranged by size: 2345 2240 496 65 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2596 3357 4385 1540 Size: 275 186 595 761 1028 2301 Fragments arranged by size: 2301 1028 761 595 275 186 BsiHKAI G_wGCw'C Cuts at: 3207 3292 4363 3207 Size: 85 1071 3990 Fragments arranged by size: 3990 1071 85 BsmI GAATG_Cn' Cuts at: 2657 2750 2657 Size: 93 5053 BsmBI CGTCTCn'nnnn_ Cuts at: 2164 2164 Size: 5146 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2465 3207 3292 4363 1391 Size: 399 675 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 675 399 85 BspEI T'CCGG_A Cuts at: 4809 4809 Size: 5146 BspHI T'CATG_A Cuts at: 2163 3035 4765 2163 Size: 872 1730 2544 Fragments arranged by size: 2544 1730 872 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2501 844 Size: 1657 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3033 1394 Size: 429 1210 3507 Fragments arranged by size: 3507 1210 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3641 3815 65 Size: 1183 2393 174 1396 Fragments arranged by size: 2393 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3790 3977 1700 Size: 110 1980 187 2869 Fragments arranged by size: 2869 1980 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5146 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5146 BssSI C'ACGA_G Cuts at: 3206 4218 3206 Size: 1012 4134 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5146 BstBI TT'CG_AA Cuts at: 3950 3950 Size: 5146 BstEII G'GTnAC_C Cuts at: 1184 2308 1184 Size: 1124 4022 BstXI CCAn_nnnn'nTGG Cuts at: 2011 2011 Size: 5146 BstYI r'GATC_y Cuts at: 1972 2476 2843 3228 3245 4697 4783 4795 5141 Size: 504 367 385 17 1452 86 12 346 Cuts at: 5141 1972 Size: 1977 Fragments arranged by size: 1977 1452 504 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 3655 Fragments arranged by size: 3655 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4407 Fragments arranged by size: 4407 683 56 BtsI GCAGTG_nn' Cuts at: 2662 3456 3476 2662 Size: 794 20 4332 Fragments arranged by size: 4332 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5146 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5111 DraI TTT'AAA Cuts at: 2450 2450 Size: 5146 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4153 809 Size: 507 2837 1802 Fragments arranged by size: 2837 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2593 3482 5111 Size: 54 1425 50 275 18 763 889 1629 Cuts at: 5111 8 Size: 43 Fragments arranged by size: 1629 1425 889 763 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2593 1537 Size: 275 781 4090 Fragments arranged by size: 4090 781 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3076 1353 Size: 1723 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3733 4107 4253 387 Size: 1064 138 2144 374 146 1280 Fragments arranged by size: 2144 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2071 3209 3806 4593 4861 1239 Size: 393 439 1138 597 787 268 1524 Fragments arranged by size: 1524 1138 787 597 439 393 268 EcoNI CCTnn'n_nnAGG Cuts at: 2075 2075 Size: 5146 EcoO109I rG'GnC_Cy Cuts at: 2176 2334 2176 Size: 158 4988 EcoRI G'AATT_C Cuts at: 2455 2833 2455 Size: 378 4768 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2313 2313 Size: 5146 FspI TGC'GCA Cuts at: 3652 3652 Size: 5146 HaeII r_GCGC'y Cuts at: 1678 4293 1678 Size: 2615 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2059 2091 3787 3819 3861 Size: 32 135 32 487 32 1696 32 42 Cuts at: 3861 3893 1373 Size: 32 2626 Fragments arranged by size: 2626 1696 487 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2490 2736 669 Size: 988 281 552 246 3079 Fragments arranged by size: 3079 988 552 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5146 HpaI GTT'AAC Cuts at: 2736 2736 Size: 5146 KpnI G_GTAC'C Cuts at: 2471 2471 Size: 5146 MfeI C'AATT_G Cuts at: 2745 2745 Size: 5146 MluI A'CGCG_T Cuts at: 5022 5022 Size: 5146 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4260 4444 1305 Size: 2955 184 2007 Fragments arranged by size: 2955 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3324 Fragments arranged by size: 3324 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2009 2118 3104 3463 3622 518 Size: 648 843 109 986 359 159 2042 Fragments arranged by size: 2042 986 843 648 359 159 109 MspA1I CmG'CkG Cuts at: 1606 2369 2562 3239 4387 4632 1606 Size: 763 193 677 1148 245 2120 Fragments arranged by size: 2120 1148 763 677 245 193 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3655 Fragments arranged by size: 3655 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5146 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5146 NotI GC'GGCC_GC Cuts at: 2593 2593 Size: 5146 NspI r_CATG'y Cuts at: 1132 1229 2504 4049 1132 Size: 97 1275 1545 2229 Fragments arranged by size: 2229 1545 1275 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5146 PciI A'CATG_T Cuts at: 4045 4045 Size: 5146 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5146 PmeI GTTT'AAAC Cuts at: 2450 2450 Size: 5146 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3215 3247 4728 4760 3215 Size: 32 1481 32 3601 Fragments arranged by size: 3601 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2334 2334 Size: 5146 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5146 PsiI TTA'TAA Cuts at: 2716 2716 Size: 5146 PstI C_TGCA'G Cuts at: 830 2498 830 Size: 1668 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5146 SalI G'TCGA_C Cuts at: 1936 2488 1936 Size: 552 4594 SanDI GG'GwC_CC Cuts at: 2334 2334 Size: 5146 SbfI CC_TGCA'GG Cuts at: 2498 2498 Size: 5146 ScaI AGT'ACT Cuts at: 3394 5106 3394 Size: 1712 3434 SfcI C'TryA_G Cuts at: 826 1045 2494 3629 4310 4501 826 Size: 219 1449 1135 681 191 1471 Fragments arranged by size: 1471 1449 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5146 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5146 SmaI CCC'GGG Cuts at: 1872 2473 1872 Size: 601 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3250 4151 4413 820 Size: 197 926 1307 901 262 1553 Fragments arranged by size: 1553 1307 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 2937 493 Size: 2444 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5146 SphI G_CATG'C Cuts at: 1132 2504 1132 Size: 1372 3774 SspI AAT'ATT Cuts at: 5 52 3070 5 Size: 47 3018 2081 Fragments arranged by size: 3018 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5146 StyI C'CwwG_G Cuts at: 513 1065 2004 2585 513 Size: 552 939 581 3074 Fragments arranged by size: 3074 939 581 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3173 3190 3343 3528 3973 325 Size: 1255 1593 17 153 185 445 1498 Fragments arranged by size: 1593 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3392 5104 96 Size: 274 80 33 51 1443 1415 1712 138 Fragments arranged by size: 1712 1443 1415 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5106 5138 5106 Size: 32 5114 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5146 XbaI T'CTAG_A Cuts at: 2482 2482 Size: 5146 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5146 XmaI C'CCGG_G Cuts at: 1870 2471 1870 Size: 601 4545 XmnI GAAnn'nnTTC Cuts at: 3275 3275 Size: 5146 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2954 276 Size: 53 83 186 936 1420 2468 Fragments arranged by size: 2468 1420 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI SalI SanDI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BstZ17I Bsu36I DraIII EcoICRI EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PspOMI PspXI PsrI PvuII RsrII SacI SacII SapI SexAI SfiI SfoI SrfI SwaI XcmI